Wall clock time and date at job start Tue Mar 31 2020 04:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86805 * 119.99882 * 2 1 4 4 H 1.48499 * 109.47094 * 270.00160 * 3 2 1 5 5 H 1.48498 * 109.47121 * 30.00257 * 3 2 1 6 6 H 1.48505 * 109.46998 * 150.00157 * 3 2 1 7 7 C 1.40051 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.46381 * 119.99693 * 359.97438 * 7 2 1 10 10 O 1.21685 * 119.99860 * 359.97438 * 9 7 2 11 11 N 1.34771 * 119.99614 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99622 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47064 * 179.97438 * 12 11 9 14 14 N 1.30918 * 126.48623 * 90.02649 * 13 12 11 15 15 N 1.28982 * 109.75910 * 179.97438 * 14 13 12 16 16 C 1.29637 * 109.47220 * 359.95758 * 15 14 13 17 17 N 1.34423 * 126.48259 * 269.71202 * 13 12 11 18 18 C 1.46304 * 129.75634 * 0.26327 * 17 13 12 19 19 C 1.53457 * 108.17647 * 163.62746 * 18 17 13 20 20 N 1.46967 * 109.73910 * 49.59951 * 19 18 17 21 21 C 1.46904 * 111.00462 * 165.11993 * 20 19 18 22 22 C 1.50704 * 109.47105 * 189.99879 * 21 20 19 23 23 C 1.34514 * 125.78569 * 89.99850 * 22 21 20 24 24 C 1.41386 * 106.83812 * 179.97438 * 23 22 21 25 25 C 1.34509 * 106.83806 * 0.02562 * 24 23 22 26 26 O 1.34294 * 108.42355 * 359.73982 * 25 24 23 27 27 C 1.47606 * 111.02919 * 289.02323 * 20 19 18 28 28 H 0.97002 * 120.00059 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00772 * 359.97438 * 11 9 7 30 30 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 31 31 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 32 32 H 1.09000 * 109.72704 * 283.30186 * 18 17 13 33 33 H 1.09006 * 109.72048 * 43.91598 * 18 17 13 34 34 H 1.08997 * 109.43110 * 169.68057 * 19 18 17 35 35 H 1.09001 * 109.43067 * 289.51648 * 19 18 17 36 36 H 1.08995 * 109.46943 * 309.99921 * 21 20 19 37 37 H 1.08996 * 109.47001 * 69.99822 * 21 20 19 38 38 H 1.08004 * 126.58157 * 359.96626 * 23 22 21 39 39 H 1.08001 * 126.57580 * 180.02562 * 24 23 22 40 40 H 1.08006 * 125.78400 * 180.02562 * 25 24 23 41 41 H 1.08997 * 110.30832 * 290.51685 * 27 20 19 42 42 H 1.09004 * 109.26616 * 169.73508 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4381 2.6527 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4805 0.0004 11 7 1.9490 -3.6476 -0.0005 12 6 1.2165 -4.9164 -0.0011 13 6 2.1959 -6.0619 -0.0016 14 7 2.7014 -6.6543 1.0507 15 7 3.5038 -7.5933 0.6790 16 6 3.5437 -7.6403 -0.6159 17 7 2.7111 -6.6724 -1.0827 18 6 2.4835 -6.4085 -2.5036 19 6 3.6009 -7.0926 -3.3026 20 7 3.7394 -8.4892 -2.8665 21 6 4.5350 -9.2646 -3.8277 22 6 4.4516 -10.7293 -3.4829 23 6 3.5323 -11.5952 -3.9459 24 6 3.8271 -12.8524 -3.3700 25 6 4.9085 -12.6792 -2.5891 26 8 5.2856 -11.3925 -2.6656 27 6 4.3248 -8.5661 -1.5136 28 1 -0.4850 0.8401 0.0004 29 1 2.9190 -3.6477 -0.0009 30 1 0.5896 -4.9744 0.8887 31 1 0.5902 -4.9740 -0.8913 32 1 1.5166 -6.8133 -2.8027 33 1 2.5047 -5.3341 -2.6862 34 1 3.3554 -7.0670 -4.3642 35 1 4.5405 -6.5659 -3.1358 36 1 4.1460 -9.1053 -4.8333 37 1 5.5745 -8.9397 -3.7845 38 1 2.7240 -11.3729 -4.6269 39 1 3.2875 -13.7747 -3.5270 40 1 5.3942 -13.4460 -2.0038 41 1 5.3707 -8.2604 -1.5361 42 1 4.2472 -9.5893 -1.1458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096058929.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:36 Heat of formation + Delta-G solvation = 78.282938 kcal Electronic energy + Delta-G solvation = -27477.001742 eV Core-core repulsion = 23460.858319 eV Total energy + Delta-G solvation = -4016.143423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.143 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.24629 -42.87889 -38.64666 -37.39386 -35.05065 -33.77157 -33.29007 -32.45129 -31.58175 -30.96920 -29.63698 -27.58852 -26.66444 -25.16890 -24.84140 -23.15720 -22.07383 -21.19686 -20.71921 -19.94088 -19.71398 -17.81086 -17.68297 -17.00788 -16.73732 -16.49549 -15.76628 -15.52853 -15.33315 -15.27622 -14.65541 -14.37555 -14.25057 -13.91472 -13.55918 -13.40393 -13.15004 -13.05759 -12.94889 -12.80250 -12.33094 -12.25656 -12.14865 -11.95373 -11.59911 -11.28208 -11.21178 -10.98963 -10.53880 -10.28723 -10.24854 -10.22771 -10.07670 -9.30453 -8.95659 -8.91259 -8.79473 -7.71819 -7.69768 -6.25546 -4.71384 1.32393 1.83529 2.25677 2.46044 2.59192 2.91883 3.10577 3.18272 3.21980 3.24343 3.98228 4.06440 4.08297 4.21220 4.41090 4.50873 4.53463 4.62936 4.70108 4.77535 4.85622 4.92992 4.95397 4.98083 5.05334 5.11931 5.30990 5.38275 5.46735 5.60320 5.69474 5.73387 5.79593 6.03843 6.13724 6.16795 6.22378 6.29495 6.32379 6.79791 6.89945 7.37592 7.75597 7.91776 8.23703 8.84789 8.95823 9.38350 10.50580 10.68550 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.026668 B = 0.002254 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.704524 B =12422.080552 C =12706.932301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.557 3.443 10 O -0.578 6.578 11 N -0.762 5.762 12 C 0.219 3.781 13 C 0.189 3.811 14 N -0.286 5.286 15 N -0.286 5.286 16 C 0.167 3.833 17 N -0.461 5.461 18 C 0.109 3.891 19 C 0.039 3.961 20 N -0.538 5.538 21 C 0.140 3.860 22 C -0.018 4.018 23 C -0.184 4.184 24 C -0.217 4.217 25 C -0.035 4.035 26 O -0.177 6.177 27 C 0.147 3.853 28 H 0.269 0.731 29 H 0.382 0.618 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.056 0.944 36 H 0.113 0.887 37 H 0.060 0.940 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.203 0.797 41 H 0.072 0.928 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.860 -21.444 -12.962 27.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.086 0.914 9 C 0.362 3.638 10 O -0.460 6.460 11 N -0.420 5.420 12 C 0.092 3.908 13 C -0.078 4.078 14 N -0.127 5.127 15 N -0.126 5.126 16 C -0.102 4.102 17 N -0.152 5.152 18 C -0.015 4.015 19 C -0.089 4.089 20 N -0.263 5.263 21 C 0.013 3.987 22 C -0.068 4.068 23 C -0.204 4.204 24 C -0.236 4.236 25 C -0.103 4.103 26 O -0.073 6.073 27 C 0.017 3.983 28 H 0.080 0.920 29 H 0.213 0.787 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.074 0.926 36 H 0.131 0.869 37 H 0.078 0.922 38 H 0.166 0.834 39 H 0.166 0.834 40 H 0.219 0.781 41 H 0.089 0.911 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.785 -21.701 -11.363 26.378 hybrid contribution 1.181 1.087 -1.379 2.116 sum 10.966 -20.614 -12.742 26.600 Atomic orbital electron populations 1.70008 1.07046 1.27439 1.34927 1.25706 0.94652 1.00318 0.92585 0.86347 0.80208 0.81273 0.78802 1.19750 1.20361 1.18876 1.20832 0.93596 0.89076 1.54368 0.91382 1.18244 0.87202 0.82002 0.76401 1.90617 1.13948 1.86483 1.54954 1.46234 1.08723 1.03744 1.83263 1.19176 0.89565 0.78898 1.03165 1.24992 1.00899 0.99587 0.82358 1.74636 1.09122 1.05499 1.23439 1.73974 1.15957 1.15100 1.07598 1.24374 0.98187 0.94832 0.92776 1.45934 1.34129 1.26581 1.08571 1.22162 1.00648 1.02643 0.76027 1.22498 0.98212 0.87477 1.00677 1.62284 1.50843 1.11341 1.01865 1.20467 0.97434 0.84607 0.96143 1.22058 0.93265 0.94548 0.96917 1.21594 1.01241 0.92687 1.04867 1.21875 1.00045 0.99487 1.02203 1.24062 0.98901 0.83904 1.03415 1.84019 1.48255 1.21020 1.54005 1.20619 0.94425 0.98304 0.84929 0.91973 0.78654 0.89510 0.91346 0.88254 0.87304 0.87418 0.92562 0.86891 0.92187 0.83396 0.83444 0.78072 0.91051 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.49 11.83 55.55 0.66 -21.84 16 2 C 0.09 2.40 5.50 -17.37 -0.10 2.30 16 3 Si 0.91 19.80 29.56 -169.99 -5.02 14.77 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.54 -14.99 9.54 -35.63 -0.34 -15.33 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.32 16 9 C 0.56 15.42 7.75 -12.99 -0.10 15.32 16 10 O -0.58 -18.16 15.02 5.20 0.08 -18.09 16 11 N -0.76 -16.85 5.54 -62.90 -0.35 -17.20 16 12 C 0.22 4.26 6.10 -5.19 -0.03 4.23 16 13 C 0.19 3.35 7.45 -155.63 -1.16 2.19 16 14 N -0.29 -5.67 12.24 32.66 0.40 -5.27 16 15 N -0.29 -5.23 12.20 32.76 0.40 -4.83 16 16 C 0.17 2.45 7.86 -155.28 -1.22 1.23 16 17 N -0.46 -6.62 3.12 -110.80 -0.35 -6.96 16 18 C 0.11 1.10 7.06 -3.91 -0.03 1.07 16 19 C 0.04 0.28 5.54 -3.55 -0.02 0.26 16 20 N -0.54 -4.46 4.67 -236.51 -1.10 -5.57 16 21 C 0.14 0.86 5.49 -4.97 -0.03 0.84 16 22 C -0.02 -0.14 5.89 -35.62 -0.21 -0.35 16 23 C -0.18 -1.47 10.81 -39.70 -0.43 -1.90 16 24 C -0.22 -1.62 10.91 -39.70 -0.43 -2.05 16 25 C -0.03 -0.25 12.09 29.41 0.36 0.11 16 26 O -0.18 -1.57 10.26 5.75 0.06 -1.51 16 27 C 0.15 1.55 5.56 -4.55 -0.03 1.53 16 28 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 29 H 0.38 7.82 8.44 -40.82 -0.34 7.47 16 30 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 31 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.11 0.46 7.83 -51.93 -0.41 0.05 16 35 H 0.06 0.40 8.07 -51.93 -0.42 -0.01 16 36 H 0.11 0.44 7.87 -51.93 -0.41 0.03 16 37 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 38 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.20 0.74 8.06 -52.48 -0.42 0.32 16 41 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 42 H 0.11 1.22 7.17 -51.93 -0.37 0.85 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -37.48 361.70 -8.84 -46.32 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.29 Total: 5.28 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -3.77 Total: 9.43 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.34 Total: -61.67 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.14 Total: -19.59 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.48 -8.84 -46.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096058929.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.605 kcal (2) G-P(sol) polarization free energy of solvation -37.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds