Wall clock time and date at job start Tue Mar 31 2020 04:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20759 * 120.00025 * 2 1 4 4 C 1.50695 * 119.99971 * 180.02562 * 2 1 3 5 5 H 1.08999 * 112.85352 * 26.69513 * 4 2 1 6 6 C 1.53782 * 113.61194 * 255.49380 * 4 2 1 7 7 C 1.53782 * 87.08427 * 219.93437 * 6 4 2 8 8 H 1.08996 * 113.61598 * 270.80170 * 7 6 4 9 9 C 1.50697 * 113.61717 * 139.97776 * 7 6 4 10 10 O 1.21277 * 120.00380 * 224.60267 * 9 7 6 11 11 N 1.34778 * 119.99904 * 44.60882 * 9 7 6 12 12 S 1.65593 * 120.00381 * 180.27509 * 11 9 7 13 13 O 1.42105 * 104.28041 * 180.79330 * 12 11 9 14 14 O 1.42102 * 104.27628 * 308.64916 * 12 11 9 15 15 C 1.81398 * 104.44945 * 64.72046 * 12 11 9 16 16 C 1.52998 * 109.47173 * 179.97438 * 15 12 11 17 17 C 1.50698 * 109.47177 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00410 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99933 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00113 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99867 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47249 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47171 * 119.99799 * 21 19 17 24 24 H 1.48495 * 109.47385 * 239.99989 * 21 19 17 25 25 C 1.53782 * 113.68932 * 157.96136 * 4 2 1 26 26 C 1.52993 * 113.61892 * 25.44373 * 25 4 2 27 27 C 1.52999 * 113.61477 * 254.53372 * 25 4 2 28 28 H 1.08995 * 109.46933 * 239.99931 * 1 2 3 29 29 H 1.09002 * 109.47219 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46924 * 119.99659 * 1 2 3 31 31 H 1.09000 * 113.61300 * 105.38877 * 6 4 2 32 32 H 1.09000 * 113.69396 * 334.49491 * 6 4 2 33 33 H 0.97011 * 119.99604 * 359.97438 * 11 9 7 34 34 H 1.08993 * 109.47637 * 300.00185 * 15 12 11 35 35 H 1.08999 * 109.47111 * 60.00389 * 15 12 11 36 36 H 1.08999 * 109.47688 * 300.00055 * 16 15 12 37 37 H 1.09005 * 109.47442 * 60.00360 * 16 15 12 38 38 H 0.96999 * 120.00097 * 179.97438 * 20 19 17 39 39 H 1.09001 * 109.47749 * 164.51178 * 26 25 4 40 40 H 1.09004 * 109.46687 * 284.51290 * 26 25 4 41 41 H 1.09004 * 109.47384 * 44.50526 * 26 25 4 42 42 H 1.08997 * 109.47621 * 322.50867 * 27 25 4 43 43 H 1.09007 * 109.46871 * 82.50685 * 27 25 4 44 44 H 1.09002 * 109.47583 * 202.50697 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.6950 -2.1201 -0.4522 6 6 2.8741 -1.6626 1.3634 7 6 4.1067 -2.1605 0.5902 8 1 4.0465 -3.2098 0.3014 9 6 5.4154 -1.8091 1.2495 10 8 6.3319 -1.3745 0.5847 11 7 5.5675 -1.9780 2.5780 12 16 7.0033 -1.5855 3.3036 13 8 6.8036 -1.9079 4.6731 14 8 7.9841 -2.2603 2.5277 15 6 7.1444 0.2098 3.0863 16 6 8.4464 0.6999 3.7230 17 6 8.5633 2.1915 3.5431 18 1 7.7865 2.7357 3.0266 19 6 9.6622 2.8616 4.0378 20 7 10.6079 2.1991 4.6672 21 14 9.8067 4.7106 3.8153 22 1 8.6195 5.2150 3.0795 23 1 9.8796 5.3652 5.1464 24 1 11.0361 5.0217 3.0428 25 6 3.6999 -1.1872 -0.5289 26 6 4.2980 0.2121 -0.3715 27 6 3.8851 -1.7593 -1.9358 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8901 31 1 2.3394 -2.4539 1.8888 32 1 3.0748 -0.7965 1.9940 33 1 4.8343 -2.3254 3.1098 34 1 7.1476 0.4480 2.0227 35 1 6.2982 0.7015 3.5662 36 1 8.4429 0.4619 4.7867 37 1 9.2930 0.2083 3.2435 38 1 11.3811 2.6704 5.0149 39 1 5.3790 0.1622 -0.5026 40 1 3.8712 0.8763 -1.1231 41 1 4.0699 0.5950 0.6232 42 1 3.2751 -2.6558 -2.0468 43 1 3.5780 -1.0174 -2.6730 44 1 4.9341 -2.0123 -2.0901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159638300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:49 Heat of formation + Delta-G solvation = -134.720864 kcal Electronic energy + Delta-G solvation = -27573.704865 eV Core-core repulsion = 23619.183353 eV Total energy + Delta-G solvation = -3954.521512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.76549 -39.62536 -37.72373 -36.65412 -35.60506 -34.48930 -33.87287 -31.53710 -31.16151 -30.49381 -27.67921 -27.43461 -25.60021 -23.60732 -22.40644 -21.60946 -20.35160 -19.31539 -18.81469 -17.74981 -17.39019 -16.51713 -16.25484 -15.96084 -15.57882 -15.37895 -15.22491 -14.98351 -14.53549 -14.35289 -14.27947 -13.89011 -13.54954 -13.40496 -12.85431 -12.60474 -12.53703 -12.45165 -12.37120 -12.10965 -11.88893 -11.80514 -11.72529 -11.68081 -11.60154 -11.37389 -11.19875 -11.06764 -10.96983 -10.74271 -10.46779 -10.38639 -10.32196 -10.08785 -9.68951 -9.31557 -9.13485 -8.47709 -6.09825 -4.14865 0.51855 1.62315 2.11301 2.73804 3.28616 3.35767 3.40221 3.65480 3.88779 3.91371 4.03505 4.12065 4.26674 4.40231 4.48329 4.68867 4.74685 4.93781 4.96781 5.00535 5.03927 5.09509 5.13816 5.20711 5.25687 5.34855 5.54581 5.58746 5.61995 5.68751 5.75119 5.87575 5.89378 6.05676 6.16787 6.45109 6.49694 6.66297 7.27278 7.30729 7.37097 7.50751 7.83952 8.19434 8.88481 9.49702 11.01367 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.003706 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.470904 B = 7553.020058 C = 8768.175059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.359 3.641 3 O -0.439 6.439 4 C -0.161 4.161 5 H 0.119 0.881 6 C -0.117 4.117 7 C -0.129 4.129 8 H 0.133 0.867 9 C 0.544 3.456 10 O -0.480 6.480 11 N -1.058 6.058 12 S 2.564 3.436 13 O -0.956 6.956 14 O -0.939 6.939 15 C -0.575 4.575 16 C 0.030 3.970 17 C -0.517 4.517 18 H 0.063 0.937 19 C 0.058 3.942 20 N -0.891 5.891 21 Si 0.900 3.100 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.042 4.042 26 C -0.134 4.134 27 C -0.139 4.139 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.427 0.573 34 H 0.132 0.868 35 H 0.121 0.879 36 H 0.034 0.966 37 H 0.036 0.964 38 H 0.264 0.736 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.558 -10.752 -10.057 27.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.234 3.766 3 O -0.311 6.311 4 C -0.180 4.180 5 H 0.137 0.863 6 C -0.155 4.155 7 C -0.152 4.152 8 H 0.150 0.850 9 C 0.330 3.670 10 O -0.351 6.351 11 N -0.820 5.820 12 S 2.664 3.336 13 O -0.947 6.947 14 O -0.929 6.929 15 C -0.710 4.710 16 C -0.009 4.009 17 C -0.557 4.557 18 H 0.081 0.919 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.728 3.272 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.042 4.042 26 C -0.191 4.191 27 C -0.196 4.196 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.262 0.738 34 H 0.150 0.850 35 H 0.139 0.861 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.821 -10.528 -10.073 26.239 hybrid contribution -0.701 1.086 0.067 1.295 sum -22.523 -9.442 -10.006 26.392 Atomic orbital electron populations 1.22355 0.94623 1.04901 1.04309 1.24346 0.91642 0.89844 0.70802 1.90499 1.71269 1.35015 1.34338 1.23305 0.96903 0.98465 0.99372 0.86320 1.22912 0.95028 1.02372 0.95142 1.23044 0.91270 1.02633 0.98245 0.84973 1.20346 0.89981 0.75729 0.80948 1.90880 1.41197 1.40684 1.62307 1.55457 1.36386 1.72798 1.17328 1.06745 0.72912 0.80223 0.73723 1.93586 1.84090 1.84303 1.32676 1.93594 1.56687 1.72142 1.70461 1.30337 1.10769 1.18239 1.11629 1.18990 0.87278 0.98666 0.96015 1.21022 1.06191 0.91107 1.37355 0.91885 1.25061 0.95545 0.98959 0.94901 1.69964 1.09708 1.36018 1.37211 0.86401 0.78214 0.84696 0.77931 1.19582 1.20804 1.20762 1.21671 0.91998 0.96354 0.94200 1.21941 1.01502 0.92526 1.03132 1.21781 1.02939 1.00317 0.94580 0.89006 0.90118 0.89166 0.89066 0.88603 0.73824 0.85023 0.86101 0.94798 0.94597 0.92591 0.90727 0.91421 0.91893 0.92415 0.92153 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.92 10.26 36.01 0.37 -0.55 16 2 C 0.36 2.77 6.68 -29.04 -0.19 2.57 16 3 O -0.44 -5.23 13.18 6.00 0.08 -5.15 16 4 C -0.16 -1.00 3.58 -90.96 -0.33 -1.32 16 5 H 0.12 0.39 7.96 -51.93 -0.41 -0.02 16 6 C -0.12 -0.72 6.25 -25.92 -0.16 -0.89 16 7 C -0.13 -1.10 3.70 -90.95 -0.34 -1.44 16 8 H 0.13 0.80 8.10 -51.93 -0.42 0.38 16 9 C 0.54 7.17 6.28 -10.99 -0.07 7.10 16 10 O -0.48 -8.28 12.69 -11.48 -0.15 -8.42 16 11 N -1.06 -13.48 5.50 31.22 0.17 -13.31 16 12 S 2.56 47.39 5.11 -107.50 -0.55 46.84 16 13 O -0.96 -19.16 18.08 -57.54 -1.04 -20.20 16 14 O -0.94 -20.84 17.05 -64.76 -1.10 -21.94 16 15 C -0.58 -11.72 5.82 37.16 0.22 -11.50 16 16 C 0.03 0.78 4.98 -27.89 -0.14 0.64 16 17 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 18 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 21 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C -0.04 -0.38 1.10 -153.69 -0.17 -0.55 16 26 C -0.13 -1.69 6.27 37.15 0.23 -1.46 16 27 C -0.14 -1.11 9.19 37.16 0.34 -0.77 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.43 8.12 -51.93 -0.42 0.01 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.71 7.51 -51.93 -0.39 0.32 16 33 H 0.43 3.62 8.33 -34.47 -0.29 3.33 16 34 H 0.13 2.65 7.18 -51.93 -0.37 2.28 16 35 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 36 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.07 1.10 6.17 -51.93 -0.32 0.78 16 40 H 0.07 0.86 7.00 -51.93 -0.36 0.50 16 41 H 0.06 0.84 6.20 -51.93 -0.32 0.52 16 42 H 0.06 0.33 7.94 -51.93 -0.41 -0.09 16 43 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 370.13 15.07 5.58 5.58 Total: -1.00 -38.65 370.13 -8.59 -47.24 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.65 Total: 0.42 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -0.65 Total: -21.61 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.91 Total: -39.50 kcal Atomic # 8 Polarization: -53.50 SS G_CDS: -2.21 Total: -55.71 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 47.39 SS G_CDS: -0.55 Total: 46.84 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.65 -8.59 -47.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159638300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.485 kcal (2) G-P(sol) polarization free energy of solvation -38.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds