Wall clock time and date at job start Tue Mar 31 2020 04:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20759 * 120.00025 * 2 1 4 4 C 1.50695 * 119.99971 * 180.02562 * 2 1 3 5 5 H 1.08999 * 112.85352 * 26.69513 * 4 2 1 6 6 C 1.53782 * 113.61194 * 255.49380 * 4 2 1 7 7 C 1.53782 * 87.08427 * 219.93437 * 6 4 2 8 8 H 1.08996 * 113.61598 * 270.80170 * 7 6 4 9 9 C 1.50697 * 113.61717 * 139.97776 * 7 6 4 10 10 O 1.21277 * 120.00380 * 224.60267 * 9 7 6 11 11 N 1.34778 * 119.99904 * 44.60882 * 9 7 6 12 12 S 1.65593 * 120.00381 * 180.27509 * 11 9 7 13 13 O 1.42105 * 104.28041 * 180.79330 * 12 11 9 14 14 O 1.42102 * 104.27628 * 308.64916 * 12 11 9 15 15 C 1.81398 * 104.44945 * 64.72046 * 12 11 9 16 16 C 1.52998 * 109.47173 * 179.97438 * 15 12 11 17 17 C 1.50698 * 109.47177 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00410 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99933 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00113 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99867 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47249 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47171 * 119.99799 * 21 19 17 24 24 H 1.48495 * 109.47385 * 239.99989 * 21 19 17 25 25 C 1.53782 * 113.68932 * 157.96136 * 4 2 1 26 26 C 1.52993 * 113.61892 * 25.44373 * 25 4 2 27 27 C 1.52999 * 113.61477 * 254.53372 * 25 4 2 28 28 H 1.08995 * 109.46933 * 239.99931 * 1 2 3 29 29 H 1.09002 * 109.47219 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46924 * 119.99659 * 1 2 3 31 31 H 1.09000 * 113.61300 * 105.38877 * 6 4 2 32 32 H 1.09000 * 113.69396 * 334.49491 * 6 4 2 33 33 H 0.97011 * 119.99604 * 359.97438 * 11 9 7 34 34 H 1.08993 * 109.47637 * 300.00185 * 15 12 11 35 35 H 1.08999 * 109.47111 * 60.00389 * 15 12 11 36 36 H 1.08999 * 109.47688 * 300.00055 * 16 15 12 37 37 H 1.09005 * 109.47442 * 60.00360 * 16 15 12 38 38 H 0.96999 * 120.00097 * 179.97438 * 20 19 17 39 39 H 1.09001 * 109.47749 * 164.51178 * 26 25 4 40 40 H 1.09004 * 109.46687 * 284.51290 * 26 25 4 41 41 H 1.09004 * 109.47384 * 44.50526 * 26 25 4 42 42 H 1.08997 * 109.47621 * 322.50867 * 27 25 4 43 43 H 1.09007 * 109.46871 * 82.50685 * 27 25 4 44 44 H 1.09002 * 109.47583 * 202.50697 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.6950 -2.1201 -0.4522 6 6 2.8741 -1.6626 1.3634 7 6 4.1067 -2.1605 0.5902 8 1 4.0465 -3.2098 0.3014 9 6 5.4154 -1.8091 1.2495 10 8 6.3319 -1.3745 0.5847 11 7 5.5675 -1.9780 2.5780 12 16 7.0033 -1.5855 3.3036 13 8 6.8036 -1.9079 4.6731 14 8 7.9841 -2.2603 2.5277 15 6 7.1444 0.2098 3.0863 16 6 8.4464 0.6999 3.7230 17 6 8.5633 2.1915 3.5431 18 1 7.7865 2.7357 3.0266 19 6 9.6622 2.8616 4.0378 20 7 10.6079 2.1991 4.6672 21 14 9.8067 4.7106 3.8153 22 1 8.6195 5.2150 3.0795 23 1 9.8796 5.3652 5.1464 24 1 11.0361 5.0217 3.0428 25 6 3.6999 -1.1872 -0.5289 26 6 4.2980 0.2121 -0.3715 27 6 3.8851 -1.7593 -1.9358 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8901 31 1 2.3394 -2.4539 1.8888 32 1 3.0748 -0.7965 1.9940 33 1 4.8343 -2.3254 3.1098 34 1 7.1476 0.4480 2.0227 35 1 6.2982 0.7015 3.5662 36 1 8.4429 0.4619 4.7867 37 1 9.2930 0.2083 3.2435 38 1 11.3811 2.6704 5.0149 39 1 5.3790 0.1622 -0.5026 40 1 3.8712 0.8763 -1.1231 41 1 4.0699 0.5950 0.6232 42 1 3.2751 -2.6558 -2.0468 43 1 3.5780 -1.0174 -2.6730 44 1 4.9341 -2.0123 -2.0901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159638300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:47 Heat of formation + Delta-G solvation = -164.202889 kcal Electronic energy + Delta-G solvation = -27574.983301 eV Core-core repulsion = 23619.183353 eV Total energy + Delta-G solvation = -3955.799948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.52359 -40.56826 -38.57738 -38.20140 -37.26403 -36.00533 -35.66176 -33.22424 -32.13281 -31.05535 -28.41184 -28.20037 -27.67056 -24.31128 -23.71996 -23.13399 -21.17729 -20.69192 -19.53378 -19.27602 -18.53182 -18.31069 -17.35038 -16.97154 -16.73341 -16.58404 -16.53552 -16.10390 -15.98448 -15.33740 -15.17444 -15.03814 -14.60920 -14.51834 -14.19523 -13.85760 -13.77969 -13.41618 -13.30457 -13.29390 -13.21087 -13.03221 -12.99259 -12.88990 -12.74844 -12.59392 -12.43207 -12.35376 -12.22697 -12.12278 -11.96023 -11.87880 -11.76126 -11.19532 -11.09030 -10.95743 -10.69894 -10.00182 -8.31288 -6.45260 -1.03377 1.03567 1.08169 1.36364 1.37717 1.40702 1.51246 2.33353 2.52058 2.95953 3.01878 3.11211 3.25414 3.30438 3.46745 3.59765 3.82966 3.95081 3.98152 4.12127 4.25393 4.35191 4.50532 4.58449 4.63360 4.66823 4.77418 4.80429 4.86601 4.92980 4.99851 5.13015 5.15807 5.17061 5.18812 5.24008 5.32100 5.43448 5.51529 5.62452 5.69657 6.00013 6.47105 6.66849 6.75431 7.24597 8.81410 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.003706 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.470904 B = 7553.020058 C = 8768.175059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.356 3.644 3 O -0.495 6.495 4 C -0.145 4.145 5 H 0.166 0.834 6 C -0.113 4.113 7 C -0.122 4.122 8 H 0.173 0.827 9 C 0.536 3.464 10 O -0.525 6.525 11 N -1.035 6.035 12 S 2.600 3.400 13 O -0.970 6.970 14 O -0.978 6.978 15 C -0.581 4.581 16 C 0.024 3.976 17 C -0.541 4.541 18 H 0.069 0.931 19 C -0.001 4.001 20 N -0.931 5.931 21 Si 0.974 3.026 22 H -0.261 1.261 23 H -0.271 1.271 24 H -0.276 1.276 25 C -0.058 4.058 26 C -0.128 4.128 27 C -0.136 4.136 28 H 0.117 0.883 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.139 0.861 32 H 0.078 0.922 33 H 0.450 0.550 34 H 0.129 0.871 35 H 0.146 0.854 36 H 0.017 0.983 37 H 0.005 0.995 38 H 0.269 0.731 39 H 0.041 0.959 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.094 0.906 43 H 0.054 0.946 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.408 -12.174 -10.544 31.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.234 3.766 3 O -0.371 6.371 4 C -0.164 4.164 5 H 0.184 0.816 6 C -0.150 4.150 7 C -0.144 4.144 8 H 0.190 0.810 9 C 0.325 3.675 10 O -0.398 6.398 11 N -0.803 5.803 12 S 2.698 3.302 13 O -0.960 6.960 14 O -0.968 6.968 15 C -0.714 4.714 16 C -0.015 4.015 17 C -0.580 4.580 18 H 0.087 0.913 19 C -0.199 4.199 20 N -0.570 5.570 21 Si 0.798 3.202 22 H -0.185 1.185 23 H -0.196 1.196 24 H -0.202 1.202 25 C -0.058 4.058 26 C -0.185 4.185 27 C -0.193 4.193 28 H 0.135 0.865 29 H 0.084 0.916 30 H 0.134 0.866 31 H 0.157 0.843 32 H 0.097 0.903 33 H 0.290 0.710 34 H 0.147 0.853 35 H 0.164 0.836 36 H 0.035 0.965 37 H 0.023 0.977 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.113 0.887 43 H 0.073 0.927 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -25.705 -11.956 -10.534 30.243 hybrid contribution 0.440 1.492 0.169 1.565 sum -25.265 -10.464 -10.365 29.244 Atomic orbital electron populations 1.22372 0.91853 1.04779 1.06659 1.25034 0.93303 0.89588 0.68630 1.90505 1.72572 1.36934 1.37060 1.23410 0.94896 0.99050 0.99039 0.81609 1.23021 0.93656 1.03109 0.95229 1.23315 0.88778 1.04431 0.97895 0.80996 1.21464 0.91323 0.74348 0.80377 1.90883 1.43175 1.42683 1.63082 1.54898 1.35417 1.72399 1.17618 1.05328 0.73466 0.78356 0.73000 1.93559 1.84784 1.83867 1.33820 1.93544 1.59481 1.72309 1.71426 1.30256 1.08631 1.21419 1.11095 1.18813 0.89356 0.98174 0.95114 1.21468 1.06682 0.92426 1.37448 0.91271 1.26088 0.95042 1.04489 0.94323 1.70090 1.10430 1.38319 1.38164 0.85262 0.78520 0.78089 0.78375 1.18515 1.19639 1.20187 1.21734 0.94583 0.94155 0.95360 1.21798 0.99467 0.95324 1.01880 1.21777 1.02242 1.01617 0.93682 0.86482 0.91648 0.86573 0.84320 0.90297 0.70967 0.85298 0.83572 0.96506 0.97674 0.92189 0.94049 0.92599 0.93296 0.88743 0.92675 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.06 10.26 71.24 0.73 -0.33 16 2 C 0.36 4.59 6.68 29.10 0.19 4.78 16 3 O -0.49 -11.79 13.18 -1.45 -0.02 -11.81 16 4 C -0.15 -1.15 3.58 -11.01 -0.04 -1.19 16 5 H 0.17 -0.15 7.96 -2.39 -0.02 -0.17 16 6 C -0.11 -0.88 6.25 31.12 0.19 -0.69 16 7 C -0.12 -1.66 3.70 -11.01 -0.04 -1.70 16 8 H 0.17 1.10 8.10 -2.39 -0.02 1.08 16 9 C 0.54 13.62 6.28 87.66 0.55 14.17 16 10 O -0.53 -18.70 12.69 13.28 0.17 -18.53 16 11 N -1.04 -24.99 5.50 -173.54 -0.95 -25.95 16 12 S 2.60 97.64 5.11 -56.49 -0.29 97.35 16 13 O -0.97 -38.76 18.08 -127.65 -2.31 -41.07 16 14 O -0.98 -44.81 17.05 -120.74 -2.06 -46.87 16 15 C -0.58 -24.67 5.82 71.98 0.42 -24.25 16 16 C 0.02 1.35 4.98 29.85 0.15 1.50 16 17 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 18 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 19 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 20 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 21 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 C -0.06 -0.94 1.10 -51.65 -0.06 -1.00 16 26 C -0.13 -3.38 6.27 71.98 0.45 -2.93 16 27 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 28 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.06 0.58 8.12 -2.39 -0.02 0.56 16 30 H 0.12 0.06 8.14 -2.38 -0.02 0.04 16 31 H 0.14 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.08 0.94 7.51 -2.39 -0.02 0.92 16 33 H 0.45 6.31 8.33 -96.74 -0.81 5.50 16 34 H 0.13 5.52 7.18 -2.39 -0.02 5.50 16 35 H 0.15 5.28 8.14 -2.39 -0.02 5.26 16 36 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.00 0.30 8.14 -2.38 -0.02 0.28 16 38 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 39 H 0.04 1.33 6.17 -2.39 -0.01 1.31 16 40 H 0.06 1.54 7.00 -2.39 -0.02 1.53 16 41 H 0.05 1.38 6.20 -2.38 -0.01 1.36 16 42 H 0.09 0.61 7.94 -2.39 -0.02 0.59 16 43 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -91.55 370.13 0.97 -90.58 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.21 Total: 10.78 kcal Atomic # 6 Polarization: -47.96 SS G_CDS: 3.91 Total: -44.05 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -0.67 Total: -83.75 kcal Atomic # 8 Polarization: -114.06 SS G_CDS: -4.22 Total: -118.28 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 97.64 SS G_CDS: -0.29 Total: 97.35 kcal Total: -91.55 0.97 -90.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159638300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.625 kcal (2) G-P(sol) polarization free energy of solvation -91.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds