Wall clock time and date at job start Tue Mar 31 2020 04:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35539 * 125.68130 * 2 1 4 4 C 1.35448 * 108.87102 * 180.30560 * 3 2 1 5 5 C 1.39831 * 107.86752 * 359.73554 * 4 3 2 6 6 C 1.37658 * 125.68008 * 179.84848 * 2 1 3 7 7 C 1.46679 * 126.22832 * 359.96625 * 6 2 1 8 8 O 1.21689 * 120.00640 * 28.99691 * 7 6 2 9 9 N 1.34774 * 119.99493 * 209.00313 * 7 6 2 10 10 C 1.45497 * 117.82709 * 7.63492 * 9 7 6 11 11 C 1.53608 * 110.14349 * 112.19641 * 10 9 7 12 12 C 1.51440 * 107.61821 * 76.58757 * 11 10 9 13 13 N 1.28864 * 128.30642 * 112.89216 * 12 11 10 14 14 N 1.40413 * 108.05430 * 180.02562 * 13 12 11 15 15 C 1.37069 * 126.31695 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00321 * 174.82430 * 15 14 13 17 17 C 1.38836 * 120.00190 * 354.81483 * 15 14 13 18 18 N 1.31436 * 119.99828 * 5.16600 * 17 15 14 19 19 Si 1.86794 * 120.00312 * 185.16240 * 17 15 14 20 20 H 1.48504 * 109.46983 * 94.99823 * 19 17 15 21 21 H 1.48494 * 109.47539 * 214.99810 * 19 17 15 22 22 H 1.48498 * 109.47230 * 335.00027 * 19 17 15 23 23 C 1.35199 * 107.36746 * 0.02562 * 14 13 12 24 24 O 1.21717 * 126.30835 * 179.90050 * 23 14 13 25 25 N 1.33898 * 107.38235 * 0.16796 * 23 14 13 26 26 C 1.47127 * 128.49355 * 180.56688 * 25 23 14 27 27 C 1.45361 * 117.82294 * 187.61189 * 9 7 6 28 28 H 1.08996 * 109.46935 * 264.61903 * 1 2 3 29 29 H 1.08998 * 109.47171 * 24.61627 * 1 2 3 30 30 H 1.09002 * 109.47077 * 144.62097 * 1 2 3 31 31 H 1.07996 * 125.56238 * 0.02562 * 3 2 1 32 32 H 1.08004 * 126.06277 * 179.76869 * 4 3 2 33 33 H 1.07999 * 126.45942 * 180.02562 * 5 4 3 34 34 H 1.08996 * 109.35656 * 351.98157 * 10 9 7 35 35 H 1.09005 * 109.24281 * 232.33228 * 10 9 7 36 36 H 1.08997 * 109.83465 * 317.05202 * 11 10 9 37 37 H 1.09008 * 109.82569 * 196.10856 * 11 10 9 38 38 H 0.97002 * 120.00353 * 179.97438 * 18 17 15 39 39 H 1.08993 * 109.95770 * 127.44836 * 26 25 23 40 40 H 1.08998 * 109.86528 * 6.51095 * 26 25 23 41 41 H 1.08998 * 109.31333 * 8.39831 * 27 9 7 42 42 H 1.09001 * 109.31057 * 128.00239 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7092 -0.0068 5 6 3.5779 -0.6888 -0.0052 6 6 2.2679 -1.1182 0.0030 7 6 1.8124 -2.5124 0.0073 8 8 0.7470 -2.8062 -0.5021 9 7 2.5738 -3.4682 0.5758 10 6 3.7520 -3.0460 1.3178 11 6 3.5647 -3.3322 2.8153 12 6 3.7702 -4.8176 3.0273 13 7 4.7204 -5.4094 3.6656 14 7 4.4948 -6.7936 3.5965 15 6 5.2785 -7.7724 4.1500 16 1 4.9648 -8.8049 4.1058 17 6 6.4758 -7.4367 4.7676 18 7 6.8094 -6.1736 4.9116 19 14 7.6126 -8.7801 5.3938 20 1 8.6383 -9.0811 4.3629 21 1 8.2812 -8.3226 6.6383 22 1 6.8223 -10.0047 5.6780 23 6 3.3620 -6.9827 2.8832 24 8 2.8510 -8.0538 2.6127 25 7 2.9091 -5.7750 2.5240 26 6 1.7041 -5.4424 1.7481 27 6 2.1631 -4.8524 0.4072 28 1 -0.3633 -0.0964 1.0231 29 1 -0.3633 0.9342 -0.4281 30 1 -0.3633 -0.8379 -0.5950 31 1 1.9083 2.1236 0.0004 32 1 4.4132 1.3611 -0.0121 33 1 4.4583 -1.3145 -0.0089 34 1 3.9078 -1.9773 1.1708 35 1 4.6217 -3.5916 0.9517 36 1 2.5575 -3.0507 3.1225 37 1 4.2989 -2.7712 3.3936 38 1 7.6457 -5.9389 5.3433 39 1 1.1046 -4.7095 2.2878 40 1 1.1160 -6.3432 1.5729 41 1 1.3416 -4.9001 -0.3076 42 1 3.0038 -5.4344 0.0295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169790119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:52 Heat of formation + Delta-G solvation = 104.007527 kcal Electronic energy + Delta-G solvation = -28962.193865 eV Core-core repulsion = 24947.165943 eV Total energy + Delta-G solvation = -4015.027921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.143 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.82332 -41.20177 -39.46561 -36.73746 -35.71478 -34.50541 -33.20418 -32.77359 -31.68882 -30.13709 -28.97954 -28.19079 -26.79249 -25.19056 -24.00294 -23.71806 -21.42715 -21.05666 -20.66016 -19.44220 -19.16091 -18.04249 -17.33703 -16.65771 -15.98771 -15.89783 -15.69537 -15.34691 -15.17386 -14.81307 -14.31776 -14.19319 -14.08530 -13.86090 -13.53568 -13.43484 -12.96317 -12.77609 -12.54440 -12.44512 -12.30446 -12.18288 -11.78607 -11.65433 -11.61008 -11.27120 -11.23861 -10.81274 -10.63687 -10.42646 -10.14812 -9.99647 -9.95235 -8.89693 -8.87042 -8.72871 -8.50926 -8.30365 -7.45667 -6.34746 -4.00715 1.33209 2.36095 2.54640 3.06359 3.07135 3.11111 3.16628 3.22448 3.27282 3.33591 3.99446 4.09496 4.34705 4.40130 4.55396 4.78317 4.96023 5.01200 5.05658 5.17107 5.18232 5.19494 5.23297 5.32785 5.34712 5.37059 5.44537 5.69334 5.76493 5.83836 5.85951 5.97556 5.99795 6.11120 6.33040 6.53464 6.63647 6.77019 6.97820 7.12444 7.23765 7.31368 7.61361 8.00637 8.10765 8.58220 9.00252 9.41310 9.81965 10.66792 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.003260 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.005699 B = 8586.514351 C = 9569.250872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.412 5.412 3 C 0.010 3.990 4 C -0.204 4.204 5 C -0.151 4.151 6 C -0.046 4.046 7 C 0.583 3.417 8 O -0.550 6.550 9 N -0.588 5.588 10 C 0.071 3.929 11 C -0.032 4.032 12 C 0.141 3.859 13 N -0.188 5.188 14 N -0.256 5.256 15 C -0.308 4.308 16 H 0.118 0.882 17 C 0.043 3.957 18 N -0.813 5.813 19 Si 0.932 3.068 20 H -0.274 1.274 21 H -0.279 1.279 22 H -0.266 1.266 23 C 0.578 3.422 24 O -0.609 6.609 25 N -0.554 5.554 26 C 0.125 3.875 27 C 0.099 3.901 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.168 0.832 32 H 0.144 0.856 33 H 0.158 0.842 34 H 0.131 0.869 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.268 0.732 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.355 17.760 -8.524 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.085 5.085 3 C -0.125 4.125 4 C -0.228 4.228 5 C -0.176 4.176 6 C -0.160 4.160 7 C 0.372 3.628 8 O -0.429 6.429 9 N -0.319 5.319 10 C -0.051 4.051 11 C -0.073 4.073 12 C -0.132 4.132 13 N -0.013 5.013 14 N -0.062 5.062 15 C -0.437 4.437 16 H 0.135 0.865 17 C -0.168 4.168 18 N -0.446 5.446 19 Si 0.757 3.243 20 H -0.200 1.200 21 H -0.205 1.205 22 H -0.191 1.191 23 C 0.281 3.719 24 O -0.491 6.491 25 N -0.284 5.284 26 C 0.000 4.000 27 C -0.024 4.024 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.185 0.815 32 H 0.162 0.838 33 H 0.175 0.825 34 H 0.148 0.852 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.589 16.981 -8.300 20.368 hybrid contribution 0.000 -0.670 0.076 0.674 sum -7.590 16.311 -8.224 19.781 Atomic orbital electron populations 1.22272 0.76293 1.05189 1.04079 1.43850 1.06701 1.04996 1.52951 1.22019 0.90748 0.91414 1.08297 1.20872 0.96054 0.94996 1.10887 1.21528 0.94694 0.95456 1.05965 1.20045 0.90653 0.87465 1.17830 1.17265 0.83535 0.83880 0.78094 1.90758 1.22203 1.82764 1.47225 1.47163 1.27006 1.06061 1.51653 1.22754 0.87295 1.04238 0.90846 1.20523 1.03402 0.87088 0.96316 1.24162 0.92000 0.93527 1.03479 1.77501 1.17374 0.89707 1.16758 1.44750 1.18712 1.02154 1.40576 1.19553 1.00619 0.87032 1.36474 0.86498 1.25409 0.97389 0.97320 0.96650 1.70173 1.22006 1.15642 1.36752 0.85846 0.79879 0.80332 0.78283 1.20010 1.20472 1.19058 1.16347 0.85217 0.83525 0.86807 1.90835 1.65863 1.25463 1.66933 1.45988 1.24390 1.07282 1.50746 1.21974 0.85840 1.01416 0.90756 1.21874 1.02253 0.80404 0.97886 0.90691 0.89660 0.87985 0.81510 0.83826 0.82481 0.85169 0.90116 0.90218 0.87373 0.92177 0.90242 0.87886 0.87299 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 10.78 59.85 0.65 1.12 16 2 N -0.41 -4.05 3.16 -120.24 -0.38 -4.43 16 3 C 0.01 0.08 11.37 -16.91 -0.19 -0.11 16 4 C -0.20 -1.77 10.81 -39.98 -0.43 -2.20 16 5 C -0.15 -1.52 8.42 -39.12 -0.33 -1.85 16 6 C -0.05 -0.54 6.35 -81.98 -0.52 -1.06 16 7 C 0.58 7.84 7.39 -12.85 -0.09 7.75 16 8 O -0.55 -8.49 14.33 5.20 0.07 -8.41 16 9 N -0.59 -7.81 2.72 -176.23 -0.48 -8.29 16 10 C 0.07 0.89 5.19 -4.27 -0.02 0.87 16 11 C -0.03 -0.47 5.93 -27.20 -0.16 -0.63 16 12 C 0.14 2.92 7.14 -153.37 -1.09 1.82 16 13 N -0.19 -4.83 10.37 33.25 0.35 -4.48 16 14 N -0.26 -7.24 3.71 -15.46 -0.06 -7.30 16 15 C -0.31 -8.88 10.11 -14.99 -0.15 -9.03 16 16 H 0.12 3.35 7.83 -52.49 -0.41 2.94 16 17 C 0.04 1.15 5.49 -17.50 -0.10 1.06 16 18 N -0.81 -22.38 11.85 55.49 0.66 -21.72 16 19 Si 0.93 20.37 29.55 -169.99 -5.02 15.35 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 C 0.58 15.49 8.60 -87.32 -0.75 14.74 16 24 O -0.61 -17.74 17.69 5.17 0.09 -17.65 16 25 N -0.55 -11.80 2.77 -117.04 -0.32 -12.12 16 26 C 0.12 2.03 6.42 -3.43 -0.02 2.01 16 27 C 0.10 1.43 6.03 -4.39 -0.03 1.40 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.10 0.96 6.47 -51.93 -0.34 0.63 16 31 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.16 1.40 6.27 -52.49 -0.33 1.07 16 34 H 0.13 1.34 2.91 -54.83 -0.16 1.18 16 35 H 0.08 1.09 7.98 -51.93 -0.41 0.68 16 36 H 0.08 1.07 7.98 -51.93 -0.41 0.65 16 37 H 0.11 1.45 8.14 -51.92 -0.42 1.03 16 38 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 39 H 0.08 1.17 7.98 -51.93 -0.41 0.76 16 40 H 0.10 1.68 7.98 -51.93 -0.41 1.27 16 41 H 0.11 1.48 6.77 -51.93 -0.35 1.13 16 42 H 0.08 1.25 8.11 -51.93 -0.42 0.83 16 LS Contribution 346.63 15.07 5.22 5.22 Total: -1.00 -36.69 346.63 -8.04 -44.73 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -4.91 Total: 3.22 kcal Atomic # 6 Polarization: 19.14 SS G_CDS: -3.25 Total: 15.89 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.24 Total: -58.34 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: 0.17 Total: -26.06 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.69 -8.04 -44.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169790119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.734 kcal (2) G-P(sol) polarization free energy of solvation -36.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds