Wall clock time and date at job start Tue Mar 31 2020 04:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35539 * 125.68130 * 2 1 4 4 C 1.35448 * 108.87102 * 180.30560 * 3 2 1 5 5 C 1.39831 * 107.86752 * 359.73554 * 4 3 2 6 6 C 1.37658 * 125.68008 * 179.84848 * 2 1 3 7 7 C 1.46679 * 126.22832 * 359.96625 * 6 2 1 8 8 O 1.21689 * 120.00640 * 28.99691 * 7 6 2 9 9 N 1.34774 * 119.99493 * 209.00313 * 7 6 2 10 10 C 1.45497 * 117.82709 * 7.63492 * 9 7 6 11 11 C 1.53608 * 110.14349 * 112.19641 * 10 9 7 12 12 C 1.51440 * 107.61821 * 76.58757 * 11 10 9 13 13 N 1.28864 * 128.30642 * 112.89216 * 12 11 10 14 14 N 1.40413 * 108.05430 * 180.02562 * 13 12 11 15 15 C 1.37069 * 126.31695 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00321 * 174.82430 * 15 14 13 17 17 C 1.38836 * 120.00190 * 354.81483 * 15 14 13 18 18 N 1.31436 * 119.99828 * 5.16600 * 17 15 14 19 19 Si 1.86794 * 120.00312 * 185.16240 * 17 15 14 20 20 H 1.48504 * 109.46983 * 94.99823 * 19 17 15 21 21 H 1.48494 * 109.47539 * 214.99810 * 19 17 15 22 22 H 1.48498 * 109.47230 * 335.00027 * 19 17 15 23 23 C 1.35199 * 107.36746 * 0.02562 * 14 13 12 24 24 O 1.21717 * 126.30835 * 179.90050 * 23 14 13 25 25 N 1.33898 * 107.38235 * 0.16796 * 23 14 13 26 26 C 1.47127 * 128.49355 * 180.56688 * 25 23 14 27 27 C 1.45361 * 117.82294 * 187.61189 * 9 7 6 28 28 H 1.08996 * 109.46935 * 264.61903 * 1 2 3 29 29 H 1.08998 * 109.47171 * 24.61627 * 1 2 3 30 30 H 1.09002 * 109.47077 * 144.62097 * 1 2 3 31 31 H 1.07996 * 125.56238 * 0.02562 * 3 2 1 32 32 H 1.08004 * 126.06277 * 179.76869 * 4 3 2 33 33 H 1.07999 * 126.45942 * 180.02562 * 5 4 3 34 34 H 1.08996 * 109.35656 * 351.98157 * 10 9 7 35 35 H 1.09005 * 109.24281 * 232.33228 * 10 9 7 36 36 H 1.08997 * 109.83465 * 317.05202 * 11 10 9 37 37 H 1.09008 * 109.82569 * 196.10856 * 11 10 9 38 38 H 0.97002 * 120.00353 * 179.97438 * 18 17 15 39 39 H 1.08993 * 109.95770 * 127.44836 * 26 25 23 40 40 H 1.08998 * 109.86528 * 6.51095 * 26 25 23 41 41 H 1.08998 * 109.31333 * 8.39831 * 27 9 7 42 42 H 1.09001 * 109.31057 * 128.00239 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7092 -0.0068 5 6 3.5779 -0.6888 -0.0052 6 6 2.2679 -1.1182 0.0030 7 6 1.8124 -2.5124 0.0073 8 8 0.7470 -2.8062 -0.5021 9 7 2.5738 -3.4682 0.5758 10 6 3.7520 -3.0460 1.3178 11 6 3.5647 -3.3322 2.8153 12 6 3.7702 -4.8176 3.0273 13 7 4.7204 -5.4094 3.6656 14 7 4.4948 -6.7936 3.5965 15 6 5.2785 -7.7724 4.1500 16 1 4.9648 -8.8049 4.1058 17 6 6.4758 -7.4367 4.7676 18 7 6.8094 -6.1736 4.9116 19 14 7.6126 -8.7801 5.3938 20 1 8.6383 -9.0811 4.3629 21 1 8.2812 -8.3226 6.6383 22 1 6.8223 -10.0047 5.6780 23 6 3.3620 -6.9827 2.8832 24 8 2.8510 -8.0538 2.6127 25 7 2.9091 -5.7750 2.5240 26 6 1.7041 -5.4424 1.7481 27 6 2.1631 -4.8524 0.4072 28 1 -0.3633 -0.0964 1.0231 29 1 -0.3633 0.9342 -0.4281 30 1 -0.3633 -0.8379 -0.5950 31 1 1.9083 2.1236 0.0004 32 1 4.4132 1.3611 -0.0121 33 1 4.4583 -1.3145 -0.0089 34 1 3.9078 -1.9773 1.1708 35 1 4.6217 -3.5916 0.9517 36 1 2.5575 -3.0507 3.1225 37 1 4.2989 -2.7712 3.3936 38 1 7.6457 -5.9389 5.3433 39 1 1.1046 -4.7095 2.2878 40 1 1.1160 -6.3432 1.5729 41 1 1.3416 -4.9001 -0.3076 42 1 3.0038 -5.4344 0.0295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169790119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:51 Heat of formation + Delta-G solvation = 80.261741 kcal Electronic energy + Delta-G solvation = -28963.223559 eV Core-core repulsion = 24947.165943 eV Total energy + Delta-G solvation = -4016.057616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.17470 -42.44943 -40.52316 -38.17476 -37.60235 -36.13584 -34.68308 -33.66608 -33.35052 -31.24415 -30.71953 -29.40893 -27.45436 -26.94840 -25.37025 -24.97224 -22.90491 -22.09697 -21.69250 -21.17124 -20.02858 -19.96428 -18.30367 -17.83915 -17.46284 -17.27896 -17.02695 -16.80001 -16.61394 -16.15486 -15.93840 -15.68388 -15.17194 -15.14183 -14.74657 -14.14406 -14.06437 -13.88495 -13.77717 -13.62596 -13.36615 -13.25027 -13.14871 -13.05712 -12.89052 -12.86463 -12.78033 -12.54118 -12.23274 -12.06847 -11.92212 -11.69728 -11.07173 -10.80064 -10.53083 -9.90448 -9.57267 -9.43537 -9.07007 -8.36715 -6.14480 0.50225 1.29240 1.36391 1.46522 1.52753 1.54593 1.61023 1.86088 1.97985 2.23256 2.25318 2.29202 2.68939 3.12191 3.41910 3.69210 3.74086 3.89011 4.02611 4.03325 4.08690 4.24943 4.28471 4.38905 4.42955 4.48467 4.52475 4.57065 4.63866 4.70720 4.78579 4.86451 4.93990 5.20298 5.23046 5.27542 5.33010 5.42174 5.81151 5.86829 6.05095 6.11951 6.20602 6.39244 6.57162 6.97647 6.98092 7.43576 7.78901 8.66134 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.003260 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.005699 B = 8586.514351 C = 9569.250872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.418 5.418 3 C 0.025 3.975 4 C -0.215 4.215 5 C -0.151 4.151 6 C -0.082 4.082 7 C 0.586 3.414 8 O -0.575 6.575 9 N -0.590 5.590 10 C 0.081 3.919 11 C -0.030 4.030 12 C 0.179 3.821 13 N -0.238 5.238 14 N -0.281 5.281 15 C -0.356 4.356 16 H 0.099 0.901 17 C 0.007 3.993 18 N -0.838 5.838 19 Si 1.006 2.994 20 H -0.266 1.266 21 H -0.264 1.264 22 H -0.267 1.267 23 C 0.556 3.444 24 O -0.649 6.649 25 N -0.547 5.547 26 C 0.121 3.879 27 C 0.110 3.890 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.204 0.796 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.275 0.725 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.120 0.880 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.104 21.245 -8.758 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.091 5.091 3 C -0.110 4.110 4 C -0.238 4.238 5 C -0.177 4.177 6 C -0.195 4.195 7 C 0.377 3.623 8 O -0.456 6.456 9 N -0.320 5.320 10 C -0.041 4.041 11 C -0.070 4.070 12 C -0.096 4.096 13 N -0.062 5.062 14 N -0.086 5.086 15 C -0.483 4.483 16 H 0.117 0.883 17 C -0.201 4.201 18 N -0.469 5.469 19 Si 0.826 3.174 20 H -0.191 1.191 21 H -0.188 1.188 22 H -0.191 1.191 23 C 0.258 3.742 24 O -0.535 6.535 25 N -0.276 5.276 26 C -0.002 4.002 27 C -0.014 4.014 28 H 0.099 0.901 29 H 0.135 0.865 30 H 0.097 0.903 31 H 0.221 0.779 32 H 0.182 0.818 33 H 0.182 0.818 34 H 0.179 0.821 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.146 0.854 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.138 0.862 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.348 20.510 -8.542 23.401 hybrid contribution -0.194 -1.503 0.050 1.517 sum -7.541 19.007 -8.492 22.142 Atomic orbital electron populations 1.22375 0.75364 1.05952 1.04323 1.44094 1.07471 1.04908 1.52629 1.22692 0.90453 0.92396 1.05491 1.21212 0.97241 0.94513 1.10844 1.21731 0.94299 0.96558 1.05133 1.19870 0.91642 0.86938 1.21071 1.17524 0.82913 0.84650 0.77185 1.90746 1.23364 1.83288 1.48193 1.47154 1.27337 1.05509 1.52029 1.22788 0.86514 1.05875 0.88939 1.20924 1.05320 0.82520 0.98261 1.25448 0.89428 0.95791 0.98948 1.77433 1.20065 0.88665 1.20019 1.44899 1.19194 1.03238 1.41248 1.19671 1.02499 0.87045 1.39118 0.88310 1.26340 0.97942 1.00001 0.95862 1.70265 1.22568 1.17368 1.36716 0.84774 0.77378 0.77024 0.78177 1.19080 1.18793 1.19097 1.16657 0.85513 0.84568 0.87475 1.90760 1.66974 1.27198 1.68567 1.46155 1.25409 1.05747 1.50252 1.22334 0.84302 1.02079 0.91473 1.21635 1.02009 0.81085 0.96624 0.90102 0.86490 0.90261 0.77939 0.81764 0.81786 0.82145 0.91204 0.87976 0.85446 0.91494 0.87881 0.88207 0.86183 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 10.78 127.77 1.38 2.13 16 2 N -0.42 -6.88 3.16 -534.33 -1.69 -8.57 16 3 C 0.03 0.30 11.37 83.48 0.95 1.24 16 4 C -0.21 -2.87 10.81 22.01 0.24 -2.63 16 5 C -0.15 -2.58 8.42 22.57 0.19 -2.39 16 6 C -0.08 -1.70 6.35 40.35 0.26 -1.45 16 7 C 0.59 14.81 7.39 86.45 0.64 15.45 16 8 O -0.57 -17.18 14.33 -4.31 -0.06 -17.24 16 9 N -0.59 -14.80 2.72 -829.69 -2.26 -17.06 16 10 C 0.08 1.86 5.19 86.77 0.45 2.31 16 11 C -0.03 -0.79 5.93 30.29 0.18 -0.61 16 12 C 0.18 7.37 7.14 137.77 0.98 8.35 16 13 N -0.24 -12.47 10.37 -48.70 -0.51 -12.98 16 14 N -0.28 -16.61 3.71 -320.79 -1.19 -17.80 16 15 C -0.36 -21.56 10.11 84.02 0.85 -20.71 16 16 H 0.10 6.08 7.83 -2.91 -0.02 6.06 16 17 C 0.01 0.38 5.49 84.90 0.47 0.85 16 18 N -0.84 -46.72 11.85 21.64 0.26 -46.47 16 19 Si 1.01 42.45 29.55 68.60 2.03 44.48 16 20 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 C 0.56 31.24 8.60 179.19 1.54 32.79 16 24 O -0.65 -40.04 17.69 -4.40 -0.08 -40.12 16 25 N -0.55 -23.76 2.77 -642.90 -1.78 -25.54 16 26 C 0.12 3.92 6.42 86.43 0.55 4.47 16 27 C 0.11 3.14 6.03 86.77 0.52 3.66 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.12 0.67 8.12 -2.39 -0.02 0.65 16 30 H 0.08 1.39 6.47 -2.39 -0.02 1.38 16 31 H 0.20 0.80 8.06 -2.91 -0.02 0.78 16 32 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.17 2.45 6.27 -2.91 -0.02 2.43 16 34 H 0.16 2.82 2.91 -5.11 -0.01 2.80 16 35 H 0.07 1.80 7.98 -2.38 -0.02 1.78 16 36 H 0.10 2.39 7.98 -2.39 -0.02 2.37 16 37 H 0.13 3.03 8.14 -2.38 -0.02 3.01 16 38 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 39 H 0.10 2.88 7.98 -2.39 -0.02 2.86 16 40 H 0.10 3.34 7.98 -2.39 -0.02 3.32 16 41 H 0.12 3.21 6.77 -2.39 -0.02 3.19 16 42 H 0.06 2.07 8.11 -2.39 -0.02 2.05 16 Total: -1.00 -84.76 346.63 4.98 -79.78 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 1.06 Total: 18.05 kcal Atomic # 6 Polarization: 34.26 SS G_CDS: 9.20 Total: 43.46 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -7.17 Total: -128.41 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -0.14 Total: -57.36 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -84.76 4.98 -79.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169790119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.039 kcal (2) G-P(sol) polarization free energy of solvation -84.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds