Wall clock time and date at job start Tue Mar 31 2020 04:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27939 * 1 3 3 Si 1.86794 * 119.99822 * 2 1 4 4 H 1.48503 * 109.46992 * 270.00115 * 3 2 1 5 5 H 1.48500 * 109.47356 * 30.00195 * 3 2 1 6 6 H 1.48500 * 109.47415 * 150.00141 * 3 2 1 7 7 C 1.50697 * 119.99884 * 180.02562 * 2 1 3 8 8 C 1.55456 * 110.91057 * 93.54851 * 7 2 1 9 9 C 1.54927 * 101.88385 * 204.34158 * 8 7 2 10 10 H 1.09002 * 110.18733 * 273.56035 * 9 8 7 11 11 C 1.50697 * 110.18691 * 151.79636 * 9 8 7 12 12 O 1.21259 * 119.99878 * 261.07836 * 11 9 8 13 13 C 1.47158 * 120.00316 * 81.08063 * 11 9 8 14 14 C 1.39856 * 120.17123 * 359.72287 * 13 11 9 15 15 C 1.37888 * 119.82356 * 179.81821 * 14 13 11 16 16 C 1.38400 * 120.17532 * 0.43296 * 15 14 13 17 17 C 1.38407 * 120.34775 * 359.80011 * 16 15 14 18 18 C 1.37886 * 120.17190 * 359.97438 * 17 16 15 19 19 N 1.46422 * 105.84854 * 32.67922 * 9 8 7 20 20 C 1.38650 * 128.20993 * 168.66880 * 19 9 8 21 21 C 1.34878 * 116.13538 * 141.53872 * 20 19 9 22 22 C 1.47718 * 119.33098 * 358.98642 * 21 20 19 23 23 C 1.39604 * 120.22297 * 197.70130 * 22 21 20 24 24 C 1.37934 * 119.82198 * 180.23804 * 23 22 21 25 25 C 1.38392 * 120.33046 * 0.02562 * 24 23 22 26 26 C 1.38475 * 120.25593 * 359.85812 * 25 24 23 27 27 C 1.35980 * 120.44048 * 0.99931 * 26 25 24 28 28 C 1.47997 * 109.23300 * 345.30649 * 19 9 8 29 29 H 1.09007 * 110.55852 * 110.31363 * 28 19 9 30 30 H 0.97000 * 120.00436 * 359.97438 * 1 2 3 31 31 H 1.09006 * 110.83189 * 217.19052 * 7 2 1 32 32 H 1.08997 * 110.95040 * 86.18914 * 8 7 2 33 33 H 1.09008 * 110.97302 * 322.50058 * 8 7 2 34 34 H 1.07998 * 120.08475 * 0.02562 * 14 13 11 35 35 H 1.07999 * 119.91029 * 180.21182 * 15 14 13 36 36 H 1.08000 * 119.83008 * 179.76826 * 16 15 14 37 37 H 1.08001 * 119.91410 * 179.97438 * 17 16 15 38 38 H 1.07998 * 120.08704 * 180.02562 * 18 17 16 39 39 H 1.07996 * 121.93037 * 321.54846 * 20 19 9 40 40 H 1.07995 * 120.33463 * 179.01528 * 21 20 19 41 41 H 1.08006 * 120.09024 * 0.22229 * 23 22 21 42 42 H 1.08002 * 119.83990 * 180.02562 * 24 23 22 43 43 H 1.08007 * 119.86990 * 179.87671 * 25 24 23 44 44 H 1.08001 * 120.01626 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2133 1.6177 0.0000 4 1 2.4608 2.0464 -1.4001 5 1 1.4108 2.6526 0.7001 6 1 3.5109 1.4403 0.7000 7 6 2.0328 -1.3051 -0.0006 8 6 2.3881 -1.7400 -1.4502 9 6 2.5396 -3.2740 -1.2949 10 1 3.5555 -3.5225 -0.9878 11 6 2.2060 -3.9635 -2.5928 12 8 1.1088 -4.4539 -2.7542 13 6 3.2118 -4.0418 -3.6641 14 6 4.4764 -3.4724 -3.4840 15 6 5.4147 -3.5532 -4.4912 16 6 5.1047 -4.1878 -5.6814 17 6 3.8537 -4.7495 -5.8693 18 6 2.9062 -4.6811 -4.8699 19 7 1.5868 -3.6667 -0.2547 20 6 1.1842 -4.9448 0.1012 21 6 1.0050 -5.1657 1.4196 22 6 1.2632 -4.0719 2.3783 23 6 1.4473 -4.3538 3.7331 24 6 1.6831 -3.3256 4.6218 25 6 1.7375 -2.0162 4.1771 26 6 1.5585 -1.7272 2.8347 27 6 1.3076 -2.7228 1.9432 28 6 1.1318 -2.4595 0.4705 29 1 0.0873 -2.2469 0.2425 30 1 -0.4851 0.8400 0.0004 31 1 2.9295 -1.2353 0.6153 32 1 3.3248 -1.2867 -1.7746 33 1 1.5800 -1.4960 -2.1399 34 1 4.7186 -2.9738 -2.5571 35 1 6.3929 -3.1171 -4.3522 36 1 5.8425 -4.2446 -6.4680 37 1 3.6192 -5.2426 -6.8010 38 1 1.9306 -5.1202 -5.0178 39 1 1.0235 -5.7187 -0.6347 40 1 0.6764 -6.1326 1.7709 41 1 1.4049 -5.3742 4.0845 42 1 1.8259 -3.5433 5.6699 43 1 1.9206 -1.2166 4.8797 44 1 1.6022 -0.7040 2.4918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216174113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:32 Heat of formation + Delta-G solvation = 81.712254 kcal Electronic energy + Delta-G solvation = -28218.297543 eV Core-core repulsion = 24567.203599 eV Total energy + Delta-G solvation = -3651.093944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.139 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.00650 -40.69761 -39.32167 -38.57754 -36.96703 -34.96230 -33.21693 -32.26929 -32.01309 -31.70693 -29.44504 -29.30398 -25.62160 -24.96188 -23.80999 -23.62791 -23.08929 -22.59592 -20.97728 -20.32032 -19.38809 -18.68830 -18.24938 -17.65815 -17.07649 -16.78539 -16.52162 -16.06752 -15.83442 -15.74743 -15.45311 -15.18715 -15.07353 -14.85712 -14.65285 -14.54750 -14.44937 -14.11610 -13.91473 -13.62611 -13.49171 -13.14215 -13.13484 -12.96702 -12.74943 -12.64638 -12.38606 -12.29496 -12.17543 -11.94178 -11.70474 -11.48498 -11.11403 -10.70786 -10.08366 -10.05091 -10.03408 -9.64285 -9.52679 -7.95058 -0.41880 0.24882 0.29514 0.62883 0.67629 0.90646 1.26262 1.30937 1.56273 1.70611 1.76819 2.12934 2.72266 2.85286 3.13077 3.18556 3.42002 3.58650 3.70786 3.79611 3.86246 3.91951 3.99697 4.04838 4.09089 4.15842 4.24446 4.29671 4.31079 4.34689 4.42243 4.55683 4.64688 4.70086 4.73564 4.76510 4.81050 4.85300 4.91432 5.14157 5.19726 5.21217 5.25827 5.31915 5.33045 5.38543 5.49530 5.73365 5.78654 5.79480 5.83655 6.21670 6.33364 6.42212 6.73946 6.84575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.002 4.002 3 Si 0.926 3.074 4 H -0.234 1.234 5 H -0.242 1.242 6 H -0.229 1.229 7 C -0.067 4.067 8 C -0.108 4.108 9 C 0.111 3.889 10 H 0.097 0.903 11 C 0.387 3.613 12 O -0.432 6.432 13 C -0.170 4.170 14 C -0.075 4.075 15 C -0.131 4.131 16 C -0.086 4.086 17 C -0.131 4.131 18 C -0.060 4.060 19 N -0.627 5.627 20 C 0.165 3.835 21 C -0.234 4.234 22 C -0.014 4.014 23 C -0.123 4.123 24 C -0.114 4.114 25 C -0.134 4.134 26 C -0.103 4.103 27 C -0.104 4.104 28 C 0.198 3.802 29 H 0.106 0.894 30 H 0.342 0.658 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.144 0.856 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.380 2.919 -1.894 6.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.230 5.230 2 C -0.251 4.251 3 Si 0.741 3.259 4 H -0.157 1.157 5 H -0.165 1.165 6 H -0.150 1.150 7 C -0.087 4.087 8 C -0.147 4.147 9 C 0.006 3.994 10 H 0.115 0.885 11 C 0.262 3.738 12 O -0.305 6.305 13 C -0.171 4.171 14 C -0.093 4.093 15 C -0.149 4.149 16 C -0.104 4.104 17 C -0.149 4.149 18 C -0.078 4.078 19 N -0.341 5.341 20 C 0.048 3.952 21 C -0.259 4.259 22 C -0.014 4.014 23 C -0.141 4.141 24 C -0.132 4.132 25 C -0.152 4.152 26 C -0.122 4.122 27 C -0.105 4.105 28 C 0.095 3.905 29 H 0.123 0.877 30 H 0.159 0.841 31 H 0.129 0.871 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.161 0.839 40 H 0.147 0.853 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.478 2.693 -2.075 5.622 hybrid contribution 0.056 0.456 0.067 0.464 sum 4.534 3.149 -2.008 5.874 Atomic orbital electron populations 1.68100 1.09973 1.37247 1.07632 1.29959 0.96792 1.04985 0.93404 0.85807 0.81668 0.75140 0.83326 1.15707 1.16464 1.15045 1.21556 0.98609 0.91403 0.97105 1.22795 1.04058 0.91466 0.96380 1.21885 0.94741 0.95346 0.87465 0.88508 1.22833 0.86585 0.76649 0.87713 1.90547 1.22932 1.36402 1.80623 1.20447 0.95935 1.04321 0.96413 1.21490 0.92057 0.96535 0.99204 1.21200 0.99859 1.00206 0.93655 1.21515 0.96579 0.95040 0.97292 1.21231 0.93651 1.00519 0.99517 1.21458 0.99710 0.94955 0.91715 1.46633 1.48803 1.04086 1.34541 1.21642 0.93831 0.85340 0.94361 1.21842 1.14305 0.98519 0.91280 1.19225 0.97140 0.92050 0.93012 1.21184 1.01447 0.99197 0.92306 1.21066 0.99712 0.92882 0.99507 1.21101 1.01968 0.96654 0.95478 1.20225 1.00293 0.98402 0.93237 1.20307 1.02472 0.92952 0.94796 1.20544 0.99738 0.82869 0.87350 0.87691 0.84081 0.87123 0.88211 0.89250 0.84989 0.85100 0.85335 0.85182 0.84887 0.83908 0.85318 0.86080 0.86244 0.86234 0.86716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 -0.16 12.20 56.22 0.69 0.53 16 2 C 0.00 0.00 3.98 -13.90 -0.06 -0.05 16 3 Si 0.93 -2.29 29.58 -169.99 -5.03 -7.32 16 4 H -0.23 0.46 7.11 56.52 0.40 0.86 16 5 H -0.24 0.36 7.11 56.52 0.40 0.76 16 6 H -0.23 0.58 7.11 56.52 0.40 0.98 16 7 C -0.07 0.06 1.72 -90.04 -0.16 -0.10 16 8 C -0.11 0.19 5.82 -24.41 -0.14 0.05 16 9 C 0.11 -0.01 2.74 -68.11 -0.19 -0.20 16 10 H 0.10 -0.18 7.12 -51.93 -0.37 -0.55 16 11 C 0.39 0.56 6.13 -30.69 -0.19 0.38 16 12 O -0.43 -2.01 15.34 5.58 0.09 -1.92 16 13 C -0.17 -0.06 5.87 -105.07 -0.62 -0.67 16 14 C -0.07 0.13 9.38 -39.10 -0.37 -0.24 16 15 C -0.13 0.26 10.03 -39.65 -0.40 -0.14 16 16 C -0.09 0.13 10.04 -39.46 -0.40 -0.27 16 17 C -0.13 0.09 10.03 -39.65 -0.40 -0.31 16 18 C -0.06 -0.04 9.60 -39.11 -0.38 -0.42 16 19 N -0.63 -1.38 2.82 -158.74 -0.45 -1.83 16 20 C 0.17 0.48 10.12 -15.66 -0.16 0.32 16 21 C -0.23 -0.73 9.99 -36.90 -0.37 -1.09 16 22 C -0.01 -0.05 5.85 -104.15 -0.61 -0.66 16 23 C -0.12 -0.36 9.79 -39.18 -0.38 -0.75 16 24 C -0.11 -0.25 10.02 -39.64 -0.40 -0.65 16 25 C -0.13 -0.25 10.05 -39.44 -0.40 -0.65 16 26 C -0.10 -0.21 8.93 -40.30 -0.36 -0.57 16 27 C -0.10 -0.32 5.54 -104.10 -0.58 -0.89 16 28 C 0.20 0.41 3.10 -67.86 -0.21 0.20 16 29 H 0.11 0.44 6.81 -51.92 -0.35 0.09 16 30 H 0.34 -0.46 8.23 -40.82 -0.34 -0.80 16 31 H 0.11 -0.25 7.40 -51.93 -0.38 -0.64 16 32 H 0.10 -0.49 7.86 -51.93 -0.41 -0.90 16 33 H 0.09 -0.06 7.92 -51.92 -0.41 -0.47 16 34 H 0.13 -0.56 6.29 -52.49 -0.33 -0.89 16 35 H 0.13 -0.52 8.06 -52.49 -0.42 -0.94 16 36 H 0.13 -0.43 8.06 -52.49 -0.42 -0.86 16 37 H 0.13 -0.30 8.06 -52.49 -0.42 -0.72 16 38 H 0.13 0.12 7.65 -52.49 -0.40 -0.28 16 39 H 0.14 0.33 7.39 -52.49 -0.39 -0.06 16 40 H 0.13 0.22 8.06 -52.49 -0.42 -0.20 16 41 H 0.12 0.18 8.06 -52.48 -0.42 -0.24 16 42 H 0.12 0.04 8.06 -52.49 -0.42 -0.38 16 43 H 0.12 0.00 8.06 -52.48 -0.42 -0.43 16 44 H 0.11 0.03 6.59 -52.49 -0.35 -0.32 16 LS Contribution 359.67 15.07 5.42 5.42 Total: 0.00 -6.29 359.67 -11.51 -17.80 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -5.48 Total: -5.97 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -6.74 Total: -6.71 kcal Atomic # 7 Polarization: -1.54 SS G_CDS: 0.24 Total: -1.30 kcal Atomic # 8 Polarization: -2.01 SS G_CDS: 0.09 Total: -1.92 kcal Atomic # 14 Polarization: -2.29 SS G_CDS: -5.03 Total: -7.32 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -6.29 -11.51 -17.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216174113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.514 kcal (2) G-P(sol) polarization free energy of solvation -6.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds