Wall clock time and date at job start Tue Mar 31 2020 04:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27939 * 1 3 3 Si 1.86794 * 119.99822 * 2 1 4 4 H 1.48503 * 109.46992 * 270.00115 * 3 2 1 5 5 H 1.48500 * 109.47356 * 30.00195 * 3 2 1 6 6 H 1.48500 * 109.47415 * 150.00141 * 3 2 1 7 7 C 1.50697 * 119.99884 * 180.02562 * 2 1 3 8 8 C 1.55456 * 110.91057 * 93.54851 * 7 2 1 9 9 C 1.54927 * 101.88385 * 204.34158 * 8 7 2 10 10 H 1.09002 * 110.18733 * 273.56035 * 9 8 7 11 11 C 1.50697 * 110.18691 * 151.79636 * 9 8 7 12 12 O 1.21259 * 119.99878 * 261.07836 * 11 9 8 13 13 C 1.47158 * 120.00316 * 81.08063 * 11 9 8 14 14 C 1.39856 * 120.17123 * 359.72287 * 13 11 9 15 15 C 1.37888 * 119.82356 * 179.81821 * 14 13 11 16 16 C 1.38400 * 120.17532 * 0.43296 * 15 14 13 17 17 C 1.38407 * 120.34775 * 359.80011 * 16 15 14 18 18 C 1.37886 * 120.17190 * 359.97438 * 17 16 15 19 19 N 1.46422 * 105.84854 * 32.67922 * 9 8 7 20 20 C 1.38650 * 128.20993 * 168.66880 * 19 9 8 21 21 C 1.34878 * 116.13538 * 141.53872 * 20 19 9 22 22 C 1.47718 * 119.33098 * 358.98642 * 21 20 19 23 23 C 1.39604 * 120.22297 * 197.70130 * 22 21 20 24 24 C 1.37934 * 119.82198 * 180.23804 * 23 22 21 25 25 C 1.38392 * 120.33046 * 0.02562 * 24 23 22 26 26 C 1.38475 * 120.25593 * 359.85812 * 25 24 23 27 27 C 1.35980 * 120.44048 * 0.99931 * 26 25 24 28 28 C 1.47997 * 109.23300 * 345.30649 * 19 9 8 29 29 H 1.09007 * 110.55852 * 110.31363 * 28 19 9 30 30 H 0.97000 * 120.00436 * 359.97438 * 1 2 3 31 31 H 1.09006 * 110.83189 * 217.19052 * 7 2 1 32 32 H 1.08997 * 110.95040 * 86.18914 * 8 7 2 33 33 H 1.09008 * 110.97302 * 322.50058 * 8 7 2 34 34 H 1.07998 * 120.08475 * 0.02562 * 14 13 11 35 35 H 1.07999 * 119.91029 * 180.21182 * 15 14 13 36 36 H 1.08000 * 119.83008 * 179.76826 * 16 15 14 37 37 H 1.08001 * 119.91410 * 179.97438 * 17 16 15 38 38 H 1.07998 * 120.08704 * 180.02562 * 18 17 16 39 39 H 1.07996 * 121.93037 * 321.54846 * 20 19 9 40 40 H 1.07995 * 120.33463 * 179.01528 * 21 20 19 41 41 H 1.08006 * 120.09024 * 0.22229 * 23 22 21 42 42 H 1.08002 * 119.83990 * 180.02562 * 24 23 22 43 43 H 1.08007 * 119.86990 * 179.87671 * 25 24 23 44 44 H 1.08001 * 120.01626 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2133 1.6177 0.0000 4 1 2.4608 2.0464 -1.4001 5 1 1.4108 2.6526 0.7001 6 1 3.5109 1.4403 0.7000 7 6 2.0328 -1.3051 -0.0006 8 6 2.3881 -1.7400 -1.4502 9 6 2.5396 -3.2740 -1.2949 10 1 3.5555 -3.5225 -0.9878 11 6 2.2060 -3.9635 -2.5928 12 8 1.1088 -4.4539 -2.7542 13 6 3.2118 -4.0418 -3.6641 14 6 4.4764 -3.4724 -3.4840 15 6 5.4147 -3.5532 -4.4912 16 6 5.1047 -4.1878 -5.6814 17 6 3.8537 -4.7495 -5.8693 18 6 2.9062 -4.6811 -4.8699 19 7 1.5868 -3.6667 -0.2547 20 6 1.1842 -4.9448 0.1012 21 6 1.0050 -5.1657 1.4196 22 6 1.2632 -4.0719 2.3783 23 6 1.4473 -4.3538 3.7331 24 6 1.6831 -3.3256 4.6218 25 6 1.7375 -2.0162 4.1771 26 6 1.5585 -1.7272 2.8347 27 6 1.3076 -2.7228 1.9432 28 6 1.1318 -2.4595 0.4705 29 1 0.0873 -2.2469 0.2425 30 1 -0.4851 0.8400 0.0004 31 1 2.9295 -1.2353 0.6153 32 1 3.3248 -1.2867 -1.7746 33 1 1.5800 -1.4960 -2.1399 34 1 4.7186 -2.9738 -2.5571 35 1 6.3929 -3.1171 -4.3522 36 1 5.8425 -4.2446 -6.4680 37 1 3.6192 -5.2426 -6.8010 38 1 1.9306 -5.1202 -5.0178 39 1 1.0235 -5.7187 -0.6347 40 1 0.6764 -6.1326 1.7709 41 1 1.4049 -5.3742 4.0845 42 1 1.8259 -3.5433 5.6699 43 1 1.9206 -1.2166 4.8797 44 1 1.6022 -0.7040 2.4918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216174113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:31 Heat of formation + Delta-G solvation = 91.265275 kcal Electronic energy + Delta-G solvation = -28217.883293 eV Core-core repulsion = 24567.203599 eV Total energy + Delta-G solvation = -3650.679694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.139 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.06536 -40.74157 -39.31446 -38.64528 -36.99507 -35.00238 -33.27551 -32.25626 -31.90038 -31.78706 -29.55004 -29.33687 -25.61609 -25.01047 -23.80004 -23.64663 -23.06118 -22.68201 -20.99611 -20.28196 -19.47984 -18.69503 -18.27096 -17.63583 -17.03730 -16.86223 -16.51591 -16.11734 -15.86591 -15.81502 -15.49359 -15.14500 -15.04936 -14.88104 -14.65644 -14.48696 -14.38389 -14.11221 -13.87055 -13.69061 -13.49107 -13.20739 -13.16188 -13.04409 -12.63833 -12.54302 -12.21956 -12.20467 -12.06866 -11.96345 -11.73922 -11.47778 -11.20810 -10.80784 -9.98468 -9.97530 -9.96347 -9.74765 -9.65309 -8.11191 -0.38619 0.07424 0.41299 0.51559 0.78747 1.08124 1.31283 1.50585 1.57815 1.77879 1.90437 2.07601 2.81092 2.84145 2.98247 3.23258 3.45335 3.66682 3.78351 3.83877 3.90264 3.97636 3.99335 4.06536 4.11237 4.23046 4.23712 4.30577 4.36889 4.45578 4.49323 4.53666 4.60981 4.62124 4.79890 4.84788 4.86981 4.90263 5.01256 5.05810 5.08250 5.18013 5.19040 5.32120 5.35399 5.44281 5.51034 5.61195 5.64171 5.68654 5.93755 6.08079 6.19546 6.35936 6.70542 6.89745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.650 5.650 2 C -0.003 4.003 3 Si 0.970 3.030 4 H -0.238 1.238 5 H -0.260 1.260 6 H -0.216 1.216 7 C -0.066 4.066 8 C -0.104 4.104 9 C 0.108 3.892 10 H 0.123 0.877 11 C 0.390 3.610 12 O -0.479 6.479 13 C -0.187 4.187 14 C -0.068 4.068 15 C -0.132 4.132 16 C -0.088 4.088 17 C -0.142 4.142 18 C -0.083 4.083 19 N -0.634 5.634 20 C 0.158 3.842 21 C -0.246 4.246 22 C -0.038 4.038 23 C -0.136 4.136 24 C -0.122 4.122 25 C -0.138 4.138 26 C -0.107 4.107 27 C -0.115 4.115 28 C 0.197 3.803 29 H 0.075 0.925 30 H 0.347 0.653 31 H 0.133 0.867 32 H 0.142 0.858 33 H 0.073 0.927 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.115 0.885 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.137 0.863 43 H 0.141 0.859 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.268 4.721 -1.586 9.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.264 5.264 2 C -0.250 4.250 3 Si 0.784 3.216 4 H -0.161 1.161 5 H -0.184 1.184 6 H -0.137 1.137 7 C -0.085 4.085 8 C -0.143 4.143 9 C 0.003 3.997 10 H 0.140 0.860 11 C 0.269 3.731 12 O -0.355 6.355 13 C -0.188 4.188 14 C -0.086 4.086 15 C -0.150 4.150 16 C -0.106 4.106 17 C -0.160 4.160 18 C -0.101 4.101 19 N -0.347 5.347 20 C 0.040 3.960 21 C -0.272 4.272 22 C -0.038 4.038 23 C -0.154 4.154 24 C -0.140 4.140 25 C -0.156 4.156 26 C -0.125 4.125 27 C -0.116 4.116 28 C 0.094 3.906 29 H 0.092 0.908 30 H 0.164 0.836 31 H 0.151 0.849 32 H 0.160 0.840 33 H 0.092 0.908 34 H 0.180 0.820 35 H 0.176 0.824 36 H 0.167 0.833 37 H 0.157 0.843 38 H 0.133 0.867 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.154 0.846 43 H 0.159 0.841 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.383 4.490 -1.774 8.821 hybrid contribution -0.875 -0.137 -0.060 0.887 sum 6.508 4.353 -1.833 8.041 Atomic orbital electron populations 1.68139 1.11186 1.38023 1.09060 1.30364 0.96639 1.05879 0.92104 0.85190 0.81043 0.72607 0.82747 1.16133 1.18357 1.13739 1.21695 0.98718 0.90324 0.97788 1.22899 1.05638 0.90171 0.95550 1.22150 0.95204 0.96333 0.85970 0.85984 1.23254 0.86024 0.75381 0.88489 1.90531 1.24800 1.38704 1.81504 1.20472 0.96820 1.05609 0.95927 1.21818 0.90779 0.95509 1.00474 1.21587 1.00855 0.99498 0.93069 1.21853 0.96330 0.94201 0.98237 1.21405 0.94035 1.00993 0.99578 1.21496 0.99635 0.96103 0.92904 1.46770 1.49079 1.03749 1.35085 1.21676 0.94061 0.85979 0.94314 1.21975 1.14744 0.98931 0.91509 1.19459 0.98164 0.92648 0.93547 1.21385 1.01721 1.00000 0.92303 1.21336 0.99428 0.92951 1.00285 1.21428 1.01198 0.97147 0.95849 1.20459 0.99830 0.98973 0.93283 1.20493 1.02658 0.92983 0.95468 1.20465 0.99013 0.83992 0.87126 0.90771 0.83554 0.84907 0.83997 0.90820 0.81997 0.82365 0.83320 0.84317 0.86653 0.84320 0.84886 0.85430 0.84554 0.84128 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -0.98 12.20 24.11 0.29 -0.69 16 2 C 0.00 0.01 3.98 88.67 0.35 0.36 16 3 Si 0.97 -6.52 29.58 68.60 2.03 -4.49 16 4 H -0.24 1.41 7.11 99.48 0.71 2.12 16 5 H -0.26 0.99 7.11 99.48 0.71 1.69 16 6 H -0.22 1.83 7.11 99.48 0.71 2.54 16 7 C -0.07 0.17 1.72 -10.42 -0.02 0.15 16 8 C -0.10 0.48 5.82 32.10 0.19 0.66 16 9 C 0.11 -0.03 2.74 44.92 0.12 0.10 16 10 H 0.12 -0.65 7.12 -2.39 -0.02 -0.67 16 11 C 0.39 1.71 6.13 28.03 0.17 1.88 16 12 O -0.48 -6.02 15.34 -2.96 -0.05 -6.07 16 13 C -0.19 -0.23 5.87 -20.15 -0.12 -0.35 16 14 C -0.07 0.36 9.38 22.58 0.21 0.57 16 15 C -0.13 0.83 10.03 22.23 0.22 1.06 16 16 C -0.09 0.38 10.04 22.35 0.22 0.61 16 17 C -0.14 0.11 10.03 22.23 0.22 0.34 16 18 C -0.08 -0.26 9.60 22.58 0.22 -0.05 16 19 N -0.63 -3.70 2.82 -656.12 -1.85 -5.55 16 20 C 0.16 1.32 10.12 82.84 0.84 2.15 16 21 C -0.25 -2.10 9.99 24.01 0.24 -1.86 16 22 C -0.04 -0.34 5.85 -19.56 -0.11 -0.45 16 23 C -0.14 -0.93 9.79 22.53 0.22 -0.71 16 24 C -0.12 -0.52 10.02 22.23 0.22 -0.30 16 25 C -0.14 -0.42 10.05 22.36 0.22 -0.20 16 26 C -0.11 -0.40 8.93 21.80 0.19 -0.21 16 27 C -0.11 -0.79 5.54 -19.52 -0.11 -0.90 16 28 C 0.20 1.05 3.10 44.22 0.14 1.19 16 29 H 0.07 0.83 6.81 -2.38 -0.02 0.81 16 30 H 0.35 -0.55 8.23 -92.71 -0.76 -1.31 16 31 H 0.13 -0.92 7.40 -2.38 -0.02 -0.93 16 32 H 0.14 -1.88 7.86 -2.39 -0.02 -1.90 16 33 H 0.07 -0.07 7.92 -2.38 -0.02 -0.09 16 34 H 0.16 -1.95 6.29 -2.91 -0.02 -1.97 16 35 H 0.16 -1.86 8.06 -2.91 -0.02 -1.88 16 36 H 0.15 -1.30 8.06 -2.91 -0.02 -1.33 16 37 H 0.14 -0.51 8.06 -2.91 -0.02 -0.54 16 38 H 0.12 0.64 7.65 -2.91 -0.02 0.62 16 39 H 0.14 1.13 7.39 -2.91 -0.02 1.11 16 40 H 0.13 0.81 8.06 -2.91 -0.02 0.79 16 41 H 0.13 0.54 8.06 -2.91 -0.02 0.51 16 42 H 0.14 0.01 8.06 -2.91 -0.02 -0.02 16 43 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 44 H 0.13 -0.08 6.59 -2.91 -0.02 -0.10 16 Total: 0.00 -18.66 359.67 5.10 -13.56 By element: Atomic # 1 Polarization: -1.83 SS G_CDS: 1.02 Total: -0.81 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 3.65 Total: 4.04 kcal Atomic # 7 Polarization: -4.69 SS G_CDS: -1.56 Total: -6.24 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.05 Total: -6.07 kcal Atomic # 14 Polarization: -6.52 SS G_CDS: 2.03 Total: -4.49 kcal Total: -18.66 5.10 -13.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216174113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.826 kcal (2) G-P(sol) polarization free energy of solvation -18.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds