Wall clock time and date at job start Tue Mar 31 2020 05:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.46987 * 2 1 4 4 C 1.34236 * 116.99896 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99745 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00003 * 179.97438 * 4 3 2 7 7 C 1.50702 * 109.72543 * 294.10729 * 6 4 3 8 8 H 1.07997 * 119.99521 * 245.36119 * 7 6 4 9 9 C 1.37873 * 120.00119 * 65.37247 * 7 6 4 10 10 N 1.31517 * 120.00059 * 11.12482 * 9 7 6 11 11 Si 1.86799 * 120.00036 * 191.13669 * 9 7 6 12 12 H 1.48494 * 109.47514 * 84.97949 * 11 9 7 13 13 H 1.48509 * 109.46906 * 324.97936 * 11 9 7 14 14 H 1.48498 * 109.47407 * 204.98525 * 11 9 7 15 15 C 1.53377 * 109.73094 * 173.46298 * 6 4 3 16 16 C 1.53019 * 109.13235 * 187.83461 * 15 6 4 17 17 N 1.46798 * 109.89547 * 62.85206 * 16 15 6 18 18 C 1.46905 * 110.99796 * 170.54747 * 17 16 15 19 19 C 1.50692 * 109.47012 * 170.00152 * 18 17 16 20 20 C 1.38233 * 120.00217 * 269.72880 * 19 18 17 21 21 C 1.38241 * 120.00578 * 179.79133 * 20 19 18 22 22 C 1.38237 * 119.99303 * 0.45848 * 21 20 19 23 23 C 1.38239 * 119.99966 * 359.77131 * 22 21 20 24 24 C 1.38224 * 120.00335 * 0.02562 * 23 22 21 25 25 C 1.47089 * 111.16652 * 294.62152 * 17 16 15 26 26 C 1.51412 * 108.56672 * 56.19184 * 25 17 16 27 27 O 1.20762 * 121.06953 * 129.69966 * 26 25 17 28 28 H 1.08997 * 109.47333 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47173 * 300.00214 * 1 2 3 30 30 H 1.09004 * 109.46853 * 60.00394 * 1 2 3 31 31 H 1.09001 * 109.47173 * 239.99786 * 2 1 3 32 32 H 1.09004 * 109.46853 * 119.99606 * 2 1 3 33 33 H 0.97003 * 119.99791 * 179.97438 * 10 9 7 34 34 H 1.08996 * 109.52519 * 307.72849 * 15 6 4 35 35 H 1.09004 * 109.52835 * 67.86686 * 15 6 4 36 36 H 1.08999 * 109.40305 * 182.98614 * 16 15 6 37 37 H 1.09003 * 109.39691 * 302.80925 * 16 15 6 38 38 H 1.09002 * 109.46698 * 290.00112 * 18 17 16 39 39 H 1.09004 * 109.46934 * 50.00020 * 18 17 16 40 40 H 1.08001 * 119.99766 * 359.97438 * 20 19 18 41 41 H 1.07993 * 120.00407 * 180.25156 * 21 20 19 42 42 H 1.08002 * 120.00059 * 179.79569 * 22 21 20 43 43 H 1.08002 * 119.99469 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.00542 * 179.97438 * 24 23 22 45 45 H 1.09003 * 109.62410 * 175.90036 * 25 17 16 46 46 H 1.09001 * 109.62820 * 296.27595 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9375 -0.0012 7 6 3.5793 3.6286 -1.2961 8 1 4.3639 3.8981 -1.9875 9 6 2.2653 3.9169 -1.5980 10 7 1.3361 3.7927 -0.6756 11 14 1.8046 4.4835 -3.3173 12 1 1.5969 3.2998 -4.1896 13 1 2.8982 5.3214 -3.8720 14 1 0.5528 5.2799 -3.2573 15 6 5.4442 2.8678 0.1627 16 6 5.9930 4.2829 0.3565 17 7 5.4525 4.8635 1.5917 18 6 6.1293 6.1252 1.9205 19 6 5.3939 6.8123 3.0421 20 6 4.3783 7.7058 2.7575 21 6 3.7007 8.3329 3.7864 22 6 4.0452 8.0735 5.0998 23 6 5.0641 7.1836 5.3843 24 6 5.7387 6.5534 4.3555 25 6 3.9973 5.0554 1.4960 26 6 3.3565 3.7246 1.1628 27 8 2.4249 3.3032 1.8054 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 0.4117 3.9960 -0.8879 34 1 5.6895 2.2594 1.0332 35 1 5.8866 2.4232 -0.7289 36 1 7.0804 4.2440 0.4204 37 1 5.7021 4.9033 -0.4912 38 1 7.1535 5.9179 2.2308 39 1 6.1394 6.7716 1.0429 40 1 4.1122 7.9118 1.7312 41 1 2.9046 9.0279 3.5641 42 1 3.5181 8.5659 5.9036 43 1 5.3329 6.9807 6.4105 44 1 6.5350 5.8584 4.5778 45 1 3.6124 5.4183 2.4490 46 1 3.7742 5.7788 0.7117 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216642989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:52 Heat of formation + Delta-G solvation = -87.010839 kcal Electronic energy + Delta-G solvation = -29950.663383 eV Core-core repulsion = 25998.599876 eV Total energy + Delta-G solvation = -3952.063507 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.93565 -39.22465 -38.02609 -36.34310 -35.36797 -33.88092 -32.23912 -30.86857 -30.79465 -30.40457 -28.39249 -26.86320 -24.65569 -23.64374 -22.48931 -22.11986 -21.25703 -20.80779 -20.01182 -18.39530 -16.82662 -16.68398 -16.10580 -15.81798 -15.34887 -15.20679 -15.10833 -14.79024 -14.64404 -14.02504 -13.82491 -13.79859 -13.26279 -13.22021 -12.77658 -12.66011 -12.51836 -12.37713 -12.27743 -12.14698 -11.84188 -11.54644 -11.33300 -11.12390 -11.02527 -10.94759 -10.86903 -10.71113 -10.64208 -10.61164 -10.44057 -10.24224 -9.55233 -9.35998 -9.12152 -8.80699 -8.76410 -8.66228 -8.06173 -7.78113 -6.29311 -4.44147 1.44628 1.53692 3.15079 3.23531 3.24036 3.44579 3.64470 3.87063 4.04442 4.21502 4.57864 4.88126 4.97470 5.02702 5.10982 5.22339 5.35342 5.47496 5.60879 5.62614 5.65951 5.68288 5.72395 5.78577 5.82100 5.95186 5.99864 6.09317 6.11958 6.15426 6.23813 6.29992 6.37958 6.45134 6.50941 6.57046 6.59581 6.61884 6.72803 6.76916 6.86386 7.05179 7.11398 7.39963 7.50516 7.57693 7.69576 7.85330 8.52133 9.02474 9.20728 9.24304 10.70806 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012936 B = 0.004339 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.016155 B = 6451.028711 C = 6825.248250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 O -0.288 6.288 4 C 0.489 3.511 5 O -0.564 6.564 6 C 0.039 3.961 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.071 3.929 10 N -0.816 5.816 11 Si 0.896 3.104 12 H -0.276 1.276 13 H -0.271 1.271 14 H -0.284 1.284 15 C -0.083 4.083 16 C 0.060 3.940 17 N -0.527 5.527 18 C 0.093 3.907 19 C -0.078 4.078 20 C -0.110 4.110 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.101 4.101 25 C 0.021 3.979 26 C 0.405 3.595 27 O -0.447 6.447 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.271 0.729 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.044 0.956 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.085 0.915 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.147 6.321 5.788 9.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 O -0.201 6.201 4 C 0.335 3.665 5 O -0.458 6.458 6 C 0.036 3.964 7 C -0.573 4.573 8 H 0.095 0.905 9 C -0.140 4.140 10 N -0.447 5.447 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.196 1.196 14 H -0.210 1.210 15 C -0.121 4.121 16 C -0.068 4.068 17 N -0.253 5.253 18 C -0.034 4.034 19 C -0.078 4.078 20 C -0.129 4.129 21 C -0.139 4.139 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.119 4.119 25 C -0.107 4.107 26 C 0.278 3.722 27 O -0.318 6.318 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.062 0.938 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.103 0.897 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.654 5.476 6.564 9.733 hybrid contribution -0.630 0.662 -1.768 1.991 sum 4.023 6.139 4.796 8.768 Atomic orbital electron populations 1.21642 0.93861 1.00926 1.03383 1.22761 0.94917 0.84324 1.00438 1.87068 1.24015 1.26768 1.82280 1.24629 0.80332 0.92596 0.68907 1.90468 1.61321 1.43928 1.50049 1.18884 0.92269 0.87609 0.97610 1.20601 0.93343 1.41832 1.01521 0.90452 1.25163 0.96571 0.94734 0.97555 1.70034 1.01837 1.41009 1.31846 0.86521 0.78119 0.78863 0.84220 1.20208 1.19614 1.20983 1.21378 0.93721 0.95238 1.01772 1.22108 0.98125 0.96264 0.90265 1.62263 1.03510 1.24110 1.35420 1.21095 0.97437 0.89946 0.94953 1.19821 0.96745 0.96523 0.94744 1.21154 0.95627 0.96655 0.99463 1.21101 0.99739 1.00207 0.92865 1.21108 0.97801 0.98842 0.96518 1.21112 0.96714 0.97412 0.98988 1.21023 1.00051 0.98850 0.91992 1.22803 0.87608 0.98619 1.01639 1.24278 0.81095 0.85890 0.80928 1.90270 1.23618 1.69216 1.48651 0.91961 0.91717 0.92000 0.93057 0.93018 0.91877 0.92141 0.90745 0.91263 0.92822 0.89919 0.93783 0.86133 0.86263 0.86476 0.86342 0.85933 0.89678 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 10.29 37.16 0.38 -2.08 16 2 C 0.05 1.08 6.19 37.16 0.23 1.31 16 3 O -0.29 -7.42 6.96 -45.44 -0.32 -7.74 16 4 C 0.49 12.80 6.23 36.01 0.22 13.03 16 5 O -0.56 -14.96 15.72 -18.75 -0.29 -15.25 16 6 C 0.04 0.94 0.48 -157.41 -0.08 0.86 16 7 C -0.54 -13.25 7.05 -34.44 -0.24 -13.49 16 8 H 0.08 1.84 7.48 -52.49 -0.39 1.45 16 9 C 0.07 1.77 5.01 -17.82 -0.09 1.68 16 10 N -0.82 -21.52 9.38 55.43 0.52 -21.00 16 11 Si 0.90 19.63 29.55 -169.99 -5.02 14.61 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 C -0.08 -1.71 4.20 -26.53 -0.11 -1.82 16 16 C 0.06 1.02 5.22 -3.87 -0.02 1.00 16 17 N -0.53 -9.07 4.81 -236.98 -1.14 -10.21 16 18 C 0.09 1.28 5.40 -4.98 -0.03 1.25 16 19 C -0.08 -1.08 4.12 -104.63 -0.43 -1.51 16 20 C -0.11 -1.51 7.94 -39.58 -0.31 -1.83 16 21 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 22 C -0.12 -1.47 10.05 -39.58 -0.40 -1.86 16 23 C -0.12 -1.48 10.05 -39.59 -0.40 -1.87 16 24 C -0.10 -1.30 9.70 -39.59 -0.38 -1.68 16 25 C 0.02 0.43 4.45 -4.52 -0.02 0.41 16 26 C 0.41 9.86 4.58 -28.33 -0.13 9.73 16 27 O -0.45 -12.21 15.45 -11.87 -0.18 -12.39 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.05 1.05 8.13 -51.93 -0.42 0.63 16 32 H 0.05 1.06 8.13 -51.93 -0.42 0.63 16 33 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.06 1.27 7.98 -51.93 -0.41 0.85 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 37 H 0.05 0.95 7.15 -51.93 -0.37 0.58 16 38 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 39 H 0.04 0.58 8.02 -51.93 -0.42 0.16 16 40 H 0.12 1.60 8.01 -52.49 -0.42 1.18 16 41 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 43 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 45 H 0.08 1.73 6.13 -51.93 -0.32 1.41 16 46 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 LS Contribution 372.60 15.07 5.62 5.62 Total: -1.00 -30.47 372.60 -9.98 -40.45 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.96 Total: 4.71 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.20 Total: 1.21 kcal Atomic # 7 Polarization: -30.59 SS G_CDS: -0.62 Total: -31.21 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -0.79 Total: -35.39 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.47 -9.98 -40.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216642989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.560 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds