Wall clock time and date at job start Tue Mar 31 2020 05:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.46987 * 2 1 4 4 C 1.34236 * 116.99896 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99745 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00003 * 179.97438 * 4 3 2 7 7 C 1.50702 * 109.72543 * 294.10729 * 6 4 3 8 8 H 1.07997 * 119.99521 * 245.36119 * 7 6 4 9 9 C 1.37873 * 120.00119 * 65.37247 * 7 6 4 10 10 N 1.31517 * 120.00059 * 11.12482 * 9 7 6 11 11 Si 1.86799 * 120.00036 * 191.13669 * 9 7 6 12 12 H 1.48494 * 109.47514 * 84.97949 * 11 9 7 13 13 H 1.48509 * 109.46906 * 324.97936 * 11 9 7 14 14 H 1.48498 * 109.47407 * 204.98525 * 11 9 7 15 15 C 1.53377 * 109.73094 * 173.46298 * 6 4 3 16 16 C 1.53019 * 109.13235 * 187.83461 * 15 6 4 17 17 N 1.46798 * 109.89547 * 62.85206 * 16 15 6 18 18 C 1.46905 * 110.99796 * 170.54747 * 17 16 15 19 19 C 1.50692 * 109.47012 * 170.00152 * 18 17 16 20 20 C 1.38233 * 120.00217 * 269.72880 * 19 18 17 21 21 C 1.38241 * 120.00578 * 179.79133 * 20 19 18 22 22 C 1.38237 * 119.99303 * 0.45848 * 21 20 19 23 23 C 1.38239 * 119.99966 * 359.77131 * 22 21 20 24 24 C 1.38224 * 120.00335 * 0.02562 * 23 22 21 25 25 C 1.47089 * 111.16652 * 294.62152 * 17 16 15 26 26 C 1.51412 * 108.56672 * 56.19184 * 25 17 16 27 27 O 1.20762 * 121.06953 * 129.69966 * 26 25 17 28 28 H 1.08997 * 109.47333 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47173 * 300.00214 * 1 2 3 30 30 H 1.09004 * 109.46853 * 60.00394 * 1 2 3 31 31 H 1.09001 * 109.47173 * 239.99786 * 2 1 3 32 32 H 1.09004 * 109.46853 * 119.99606 * 2 1 3 33 33 H 0.97003 * 119.99791 * 179.97438 * 10 9 7 34 34 H 1.08996 * 109.52519 * 307.72849 * 15 6 4 35 35 H 1.09004 * 109.52835 * 67.86686 * 15 6 4 36 36 H 1.08999 * 109.40305 * 182.98614 * 16 15 6 37 37 H 1.09003 * 109.39691 * 302.80925 * 16 15 6 38 38 H 1.09002 * 109.46698 * 290.00112 * 18 17 16 39 39 H 1.09004 * 109.46934 * 50.00020 * 18 17 16 40 40 H 1.08001 * 119.99766 * 359.97438 * 20 19 18 41 41 H 1.07993 * 120.00407 * 180.25156 * 21 20 19 42 42 H 1.08002 * 120.00059 * 179.79569 * 22 21 20 43 43 H 1.08002 * 119.99469 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.00542 * 179.97438 * 24 23 22 45 45 H 1.09003 * 109.62410 * 175.90036 * 25 17 16 46 46 H 1.09001 * 109.62820 * 296.27595 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9375 -0.0012 7 6 3.5793 3.6286 -1.2961 8 1 4.3639 3.8981 -1.9875 9 6 2.2653 3.9169 -1.5980 10 7 1.3361 3.7927 -0.6756 11 14 1.8046 4.4835 -3.3173 12 1 1.5969 3.2998 -4.1896 13 1 2.8982 5.3214 -3.8720 14 1 0.5528 5.2799 -3.2573 15 6 5.4442 2.8678 0.1627 16 6 5.9930 4.2829 0.3565 17 7 5.4525 4.8635 1.5917 18 6 6.1293 6.1252 1.9205 19 6 5.3939 6.8123 3.0421 20 6 4.3783 7.7058 2.7575 21 6 3.7007 8.3329 3.7864 22 6 4.0452 8.0735 5.0998 23 6 5.0641 7.1836 5.3843 24 6 5.7387 6.5534 4.3555 25 6 3.9973 5.0554 1.4960 26 6 3.3565 3.7246 1.1628 27 8 2.4249 3.3032 1.8054 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 0.4117 3.9960 -0.8879 34 1 5.6895 2.2594 1.0332 35 1 5.8866 2.4232 -0.7289 36 1 7.0804 4.2440 0.4204 37 1 5.7021 4.9033 -0.4912 38 1 7.1535 5.9179 2.2308 39 1 6.1394 6.7716 1.0429 40 1 4.1122 7.9118 1.7312 41 1 2.9046 9.0279 3.5641 42 1 3.5181 8.5659 5.9036 43 1 5.3329 6.9807 6.4105 44 1 6.5350 5.8584 4.5778 45 1 3.6124 5.4183 2.4490 46 1 3.7742 5.7788 0.7117 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216642989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:51 Heat of formation + Delta-G solvation = -102.986741 kcal Electronic energy + Delta-G solvation = -29951.356150 eV Core-core repulsion = 25998.599876 eV Total energy + Delta-G solvation = -3952.756274 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.66289 -40.53991 -39.64493 -37.97331 -37.23019 -35.63918 -33.80229 -32.46181 -31.82855 -31.67807 -30.02235 -28.28040 -26.42692 -25.11207 -23.73434 -23.40452 -22.85517 -22.08555 -21.61149 -20.20934 -18.69824 -18.07051 -17.63337 -17.39948 -17.13179 -16.63856 -16.51894 -16.24414 -16.06407 -15.56948 -15.39720 -15.25146 -14.82122 -14.48241 -14.29708 -14.18632 -13.94615 -13.81358 -13.57437 -13.56063 -13.28775 -13.03540 -12.91559 -12.85240 -12.68121 -12.45900 -12.41034 -12.30982 -12.21873 -12.02272 -11.78166 -11.67810 -11.31451 -11.20062 -11.04705 -10.70303 -9.93383 -9.71305 -9.65776 -9.16755 -8.20103 -6.39852 0.47617 0.58074 1.39389 1.43648 1.52116 1.63617 1.65627 2.27820 2.38194 2.81952 3.10769 3.26695 3.63949 3.83787 4.01351 4.03229 4.09941 4.16285 4.21044 4.22565 4.28234 4.32361 4.36524 4.46498 4.53862 4.65047 4.68437 4.72624 4.77328 4.83118 4.89613 4.91224 4.98938 5.06981 5.16768 5.18581 5.20352 5.23853 5.36427 5.62237 5.63058 5.68356 5.76863 5.80099 5.93999 6.01839 6.14123 6.22104 6.59309 7.15960 7.26130 7.28679 8.79027 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012936 B = 0.004339 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.016155 B = 6451.028711 C = 6825.248250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.039 3.961 3 O -0.309 6.309 4 C 0.475 3.525 5 O -0.580 6.580 6 C 0.024 3.976 7 C -0.541 4.541 8 H 0.085 0.915 9 C 0.032 3.968 10 N -0.842 5.842 11 Si 0.953 3.047 12 H -0.283 1.283 13 H -0.258 1.258 14 H -0.285 1.285 15 C -0.080 4.080 16 C 0.066 3.934 17 N -0.530 5.530 18 C 0.095 3.905 19 C -0.095 4.095 20 C -0.128 4.128 21 C -0.133 4.133 22 C -0.128 4.128 23 C -0.129 4.129 24 C -0.111 4.111 25 C 0.041 3.959 26 C 0.399 3.601 27 O -0.488 6.488 28 H 0.104 0.896 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.267 0.733 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.050 0.950 38 H 0.108 0.892 39 H 0.053 0.947 40 H 0.117 0.883 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.135 0.865 45 H 0.081 0.919 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.179 7.299 5.872 11.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.036 4.036 3 O -0.222 6.222 4 C 0.322 3.678 5 O -0.475 6.475 6 C 0.022 3.978 7 C -0.577 4.577 8 H 0.103 0.897 9 C -0.177 4.177 10 N -0.474 5.474 11 Si 0.778 3.222 12 H -0.209 1.209 13 H -0.182 1.182 14 H -0.210 1.210 15 C -0.118 4.118 16 C -0.061 4.061 17 N -0.257 5.257 18 C -0.031 4.031 19 C -0.095 4.095 20 C -0.147 4.147 21 C -0.151 4.151 22 C -0.146 4.146 23 C -0.147 4.147 24 C -0.130 4.130 25 C -0.088 4.088 26 C 0.275 3.725 27 O -0.362 6.362 28 H 0.123 0.877 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.068 0.932 38 H 0.126 0.874 39 H 0.071 0.929 40 H 0.135 0.865 41 H 0.151 0.849 42 H 0.159 0.841 43 H 0.160 0.840 44 H 0.153 0.847 45 H 0.099 0.901 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.712 6.473 6.642 10.892 hybrid contribution -0.961 0.299 -1.737 2.007 sum 4.751 6.772 4.905 9.617 Atomic orbital electron populations 1.21629 0.91041 1.03417 1.02545 1.23126 0.97227 0.82594 1.00624 1.87052 1.23901 1.29316 1.81953 1.25195 0.80582 0.93434 0.68585 1.90426 1.61568 1.44551 1.50929 1.19156 0.94417 0.86657 0.97576 1.20822 0.93598 1.41476 1.01785 0.89710 1.25823 0.96598 0.94841 1.00407 1.70175 1.01763 1.42137 1.33318 0.85627 0.78068 0.78200 0.80273 1.20916 1.18175 1.21024 1.21389 0.91432 0.97596 1.01359 1.22092 1.00080 0.93789 0.90121 1.62256 1.01679 1.26377 1.35381 1.21199 0.98121 0.88382 0.95403 1.19913 0.97267 0.97074 0.95253 1.21276 0.96249 0.97413 0.99714 1.21375 1.00066 1.00458 0.93185 1.21460 0.97709 0.98604 0.96865 1.21461 0.96340 0.96882 1.00039 1.21275 1.00579 0.99180 0.91930 1.22489 0.89583 0.95678 1.01013 1.24823 0.80293 0.87145 0.80236 1.90237 1.25340 1.70596 1.50010 0.87746 0.92604 0.92678 0.92757 0.92886 0.92378 0.93151 0.90623 0.87349 0.93159 0.87381 0.92912 0.86539 0.84904 0.84112 0.84003 0.84748 0.90071 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 10.29 71.98 0.74 -3.70 16 2 C 0.04 1.67 6.19 71.98 0.45 2.11 16 3 O -0.31 -16.33 6.96 -45.58 -0.32 -16.65 16 4 C 0.47 25.42 6.23 71.24 0.44 25.86 16 5 O -0.58 -31.36 15.72 21.97 0.35 -31.01 16 6 C 0.02 1.19 0.48 -54.06 -0.03 1.17 16 7 C -0.54 -26.66 7.05 25.60 0.18 -26.48 16 8 H 0.08 3.96 7.48 -2.91 -0.02 3.94 16 9 C 0.03 1.59 5.01 84.65 0.42 2.01 16 10 N -0.84 -45.24 9.38 21.45 0.20 -45.04 16 11 Si 0.95 40.15 29.55 68.60 2.03 42.18 16 12 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 13 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 14 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 15 C -0.08 -3.24 4.20 30.73 0.13 -3.11 16 16 C 0.07 2.13 5.22 86.33 0.45 2.59 16 17 N -0.53 -17.49 4.81 -903.68 -4.34 -21.83 16 18 C 0.10 2.41 5.40 85.55 0.46 2.87 16 19 C -0.09 -2.49 4.12 -19.87 -0.08 -2.57 16 20 C -0.13 -3.41 7.94 22.27 0.18 -3.23 16 21 C -0.13 -3.19 10.05 22.27 0.22 -2.97 16 22 C -0.13 -2.78 10.05 22.27 0.22 -2.55 16 23 C -0.13 -2.80 10.05 22.27 0.22 -2.58 16 24 C -0.11 -2.67 9.70 22.27 0.22 -2.45 16 25 C 0.04 1.64 4.45 85.75 0.38 2.02 16 26 C 0.40 19.78 4.58 29.56 0.14 19.91 16 27 O -0.49 -27.56 15.45 15.63 0.24 -27.32 16 28 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.05 2.24 8.13 -2.39 -0.02 2.22 16 32 H 0.05 2.20 8.13 -2.38 -0.02 2.18 16 33 H 0.27 13.94 8.31 -92.71 -0.77 13.16 16 34 H 0.05 2.11 7.98 -2.39 -0.02 2.09 16 35 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.11 2.68 8.08 -2.39 -0.02 2.66 16 37 H 0.05 1.68 7.15 -2.39 -0.02 1.66 16 38 H 0.11 2.20 8.09 -2.39 -0.02 2.18 16 39 H 0.05 1.26 8.02 -2.38 -0.02 1.24 16 40 H 0.12 3.08 8.01 -2.91 -0.02 3.06 16 41 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 42 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 43 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 44 H 0.13 2.80 8.06 -2.91 -0.02 2.78 16 45 H 0.08 3.32 6.13 -2.39 -0.01 3.31 16 46 H 0.06 2.50 8.10 -2.39 -0.02 2.48 16 Total: -1.00 -67.05 372.60 3.87 -63.18 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.97 Total: 27.58 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 4.75 Total: 8.90 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: -4.14 Total: -66.87 kcal Atomic # 8 Polarization: -75.24 SS G_CDS: 0.27 Total: -74.97 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -67.05 3.87 -63.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216642989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.804 kcal (2) G-P(sol) polarization free energy of solvation -67.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds