Wall clock time and date at job start Tue Mar 31 2020 04:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53783 * 113.69231 * 2 1 4 4 C 1.53775 * 87.08046 * 139.98888 * 3 2 1 5 5 C 1.53002 * 113.61483 * 220.01508 * 4 3 2 6 6 N 1.46497 * 109.47221 * 272.50115 * 5 4 3 7 7 C 1.39899 * 119.76821 * 269.72360 * 6 5 4 8 8 C 1.38975 * 120.10353 * 18.58573 * 7 6 5 9 9 C 1.37915 * 120.02198 * 179.97438 * 8 7 6 10 10 C 1.39162 * 119.99298 * 0.02784 * 9 8 7 11 11 S 1.76198 * 120.02457 * 180.02562 * 10 9 8 12 12 C 1.76203 * 100.00056 * 265.46826 * 11 10 9 13 13 H 1.07997 * 119.99502 * 5.11227 * 12 11 10 14 14 C 1.38679 * 119.99746 * 185.11338 * 12 11 10 15 15 N 1.31651 * 120.00185 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99534 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47247 * 89.99865 * 16 14 12 18 18 H 1.48500 * 109.47079 * 210.00151 * 16 14 12 19 19 H 1.48503 * 109.47310 * 329.99760 * 16 14 12 20 20 C 1.38704 * 119.91473 * 359.53665 * 10 9 8 21 21 C 1.37909 * 120.06367 * 0.67210 * 20 10 9 22 22 C 1.50676 * 120.11605 * 179.31052 * 21 20 10 23 23 C 1.52905 * 109.52680 * 146.01133 * 22 21 20 24 24 C 1.34550 * 119.77042 * 90.00337 * 6 5 4 25 25 O 1.21297 * 119.60941 * 0.71039 * 24 6 5 26 26 C 1.53780 * 87.08430 * 334.56871 * 4 3 2 27 27 H 1.08997 * 109.47006 * 320.93948 * 1 2 3 28 28 H 1.09000 * 109.46671 * 80.93480 * 1 2 3 29 29 H 1.08999 * 109.46978 * 200.93407 * 1 2 3 30 30 H 1.08997 * 112.85000 * 228.73076 * 2 1 3 31 31 H 1.08993 * 113.61288 * 254.54058 * 3 2 1 32 32 H 1.08998 * 113.61213 * 25.44229 * 3 2 1 33 33 H 1.09009 * 113.61479 * 89.11475 * 4 3 2 34 34 H 1.08999 * 109.46991 * 32.50408 * 5 4 3 35 35 H 1.09008 * 109.46927 * 152.50265 * 5 4 3 36 36 H 1.08005 * 119.99099 * 359.97438 * 8 7 6 37 37 H 1.07992 * 120.00656 * 180.02562 * 9 8 7 38 38 H 0.97007 * 119.99850 * 180.02562 * 15 14 12 39 39 H 1.07999 * 119.91424 * 179.97438 * 20 10 9 40 40 H 1.09005 * 109.45938 * 25.99932 * 22 21 20 41 41 H 1.08994 * 109.46726 * 266.03103 * 22 21 20 42 42 H 1.09006 * 109.40243 * 288.52458 * 23 22 21 43 43 H 1.08993 * 109.40117 * 168.78477 * 23 22 21 44 44 H 1.08995 * 113.61269 * 270.88224 * 26 4 3 45 45 H 1.09005 * 113.69101 * 139.99277 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1480 1.4082 0.0000 4 6 3.1936 0.8638 0.9874 5 6 3.5489 1.8448 2.1065 6 7 4.6336 2.7226 1.6604 7 6 5.9638 2.3528 1.8863 8 6 6.2815 1.0291 2.1660 9 6 7.5934 0.6664 2.3879 10 6 8.5995 1.6262 2.3323 11 16 10.2760 1.1636 2.6150 12 6 10.4061 1.5210 4.3355 13 1 9.5335 1.8346 4.8893 14 6 11.6289 1.3996 4.9783 15 7 12.6926 1.0178 4.3031 16 14 11.7666 1.7778 6.8025 17 1 11.5131 0.5414 7.5849 18 1 13.1309 2.2822 7.1018 19 1 10.7652 2.8107 7.1708 20 6 8.2819 2.9453 2.0441 21 6 6.9694 3.3082 1.8265 22 6 6.6213 4.7436 1.5286 23 6 5.4401 4.7924 0.5588 24 6 4.3435 3.8814 1.0412 25 8 3.1845 4.1953 0.8694 26 6 2.1460 -0.1848 1.3969 27 1 -0.3633 0.7979 0.6476 28 1 -0.3633 0.1619 -1.0149 29 1 -0.3633 -0.9598 0.3672 30 1 1.9533 -0.6625 -0.7549 31 1 2.5672 1.7010 -0.9625 32 1 1.4975 2.1704 0.4291 33 1 4.0718 0.4374 0.5024 34 1 2.6739 2.4457 2.3543 35 1 3.8700 1.2896 2.9879 36 1 5.5006 0.2842 2.2096 37 1 7.8400 -0.3624 2.6049 38 1 13.5478 0.9325 4.7529 39 1 9.0627 3.6902 2.0013 40 1 7.4812 5.2400 1.0788 41 1 6.3522 5.2518 2.4545 42 1 5.7694 4.4711 -0.4294 43 1 5.0627 5.8132 0.4991 44 1 1.4951 0.1419 2.2078 45 1 2.5624 -1.1784 1.5626 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218818417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:39 Heat of formation + Delta-G solvation = -7.825198 kcal Electronic energy + Delta-G solvation = -25721.896933 eV Core-core repulsion = 22216.020044 eV Total energy + Delta-G solvation = -3505.876889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.18560 -39.20453 -38.36735 -35.34180 -34.40202 -32.52147 -30.81878 -29.87822 -29.15420 -27.15140 -25.81603 -25.57771 -24.29891 -22.73895 -22.16379 -21.00317 -19.59829 -18.92272 -17.82032 -17.41235 -16.77838 -16.18674 -15.84772 -15.35144 -14.86868 -14.68662 -14.48472 -14.22990 -14.09374 -13.69473 -13.47592 -13.34282 -13.25180 -12.98554 -12.64132 -12.59965 -12.36002 -12.28092 -11.86731 -11.67929 -11.50162 -11.25300 -11.17485 -11.12249 -10.90589 -10.77644 -10.73718 -10.56354 -10.29523 -10.02939 -9.85946 -9.65183 -9.17538 -8.65462 -8.46750 -7.50823 -6.71438 -6.29702 -4.03761 1.39703 1.71353 2.58295 2.76468 3.17245 3.19416 3.25562 3.47844 4.00099 4.20722 4.27849 4.41087 4.45997 4.50644 4.59344 4.73207 4.85300 5.03986 5.06294 5.10810 5.15943 5.19398 5.23319 5.36303 5.40955 5.47930 5.48489 5.52086 5.56336 5.60711 5.66044 5.67941 5.77813 5.81178 5.87041 5.91055 5.92660 6.04403 6.15226 6.24362 6.35853 6.39368 6.46847 6.76392 7.00503 7.11979 7.41990 7.55873 7.95857 8.31319 9.15732 10.76311 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017232 B = 0.002909 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.484789 B = 9622.159331 C =10384.249768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C -0.121 4.121 4 C -0.130 4.130 5 C 0.117 3.883 6 N -0.546 5.546 7 C 0.153 3.847 8 C -0.161 4.161 9 C -0.055 4.055 10 C -0.113 4.113 11 S -0.040 6.040 12 C -0.517 4.517 13 H 0.075 0.925 14 C 0.073 3.927 15 N -0.871 5.871 16 Si 0.919 3.081 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.272 1.272 20 C -0.047 4.047 21 C -0.136 4.136 22 C -0.073 4.073 23 C -0.136 4.136 24 C 0.520 3.480 25 O -0.534 6.534 26 C -0.127 4.127 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.269 0.731 39 H 0.132 0.868 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.614 1.567 -7.304 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 C -0.159 4.159 4 C -0.149 4.149 5 C -0.005 4.005 6 N -0.268 5.268 7 C 0.059 3.941 8 C -0.183 4.183 9 C -0.076 4.076 10 C -0.225 4.225 11 S 0.194 5.806 12 C -0.664 4.664 13 H 0.093 0.907 14 C -0.136 4.136 15 N -0.507 5.507 16 Si 0.745 3.255 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.196 1.196 20 C -0.068 4.068 21 C -0.140 4.140 22 C -0.111 4.111 23 C -0.176 4.176 24 C 0.310 3.690 25 O -0.411 6.411 26 C -0.165 4.165 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.079 0.921 39 H 0.150 0.850 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.101 0.899 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.269 1.309 -8.116 20.034 hybrid contribution -0.683 0.597 1.979 2.177 sum -18.952 1.906 -6.137 20.012 Atomic orbital electron populations 1.21707 0.94928 1.01560 1.01606 1.22472 0.95522 0.98026 0.97611 1.23027 0.97506 0.96072 0.99260 1.22954 0.97841 0.96739 0.97356 1.21686 0.90115 0.91817 0.96843 1.45457 1.05244 1.20471 1.55657 1.17614 0.82354 0.93594 1.00517 1.20810 0.97283 0.93580 1.06639 1.21567 0.90925 0.99821 0.95281 1.22647 1.02590 0.94971 1.02262 1.83580 0.99835 1.83770 1.13411 1.22824 0.97878 1.53124 0.92624 0.90702 1.24988 0.94660 0.94661 0.99321 1.70002 1.00019 1.44291 1.36368 0.86149 0.77661 0.78823 0.82843 1.20201 1.20708 1.19628 1.21354 0.94160 0.96167 0.95107 1.19460 0.93122 0.94277 1.07130 1.20378 0.97771 0.93632 0.99295 1.21691 0.94557 1.00158 1.01196 1.20718 0.90554 0.80963 0.76778 1.90688 1.21306 1.73552 1.55507 1.22971 0.97542 0.98785 0.97231 0.92615 0.92817 0.92700 0.89534 0.92176 0.89462 0.88733 0.89245 0.89767 0.85880 0.85131 0.92118 0.85035 0.89184 0.90406 0.88160 0.87802 0.89923 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.70 37.16 0.36 -0.72 16 2 C -0.12 -1.02 4.36 -89.81 -0.39 -1.41 16 3 C -0.12 -1.26 6.59 -25.92 -0.17 -1.43 16 4 C -0.13 -1.32 3.46 -89.81 -0.31 -1.63 16 5 C 0.12 1.34 4.52 -4.04 -0.02 1.32 16 6 N -0.55 -7.25 2.69 -113.58 -0.31 -7.55 16 7 C 0.15 2.25 6.32 -83.68 -0.53 1.72 16 8 C -0.16 -2.40 8.86 -39.43 -0.35 -2.75 16 9 C -0.05 -0.96 9.79 -39.36 -0.39 -1.35 16 10 C -0.11 -2.28 5.44 -39.07 -0.21 -2.49 16 11 S -0.04 -1.00 21.40 -107.50 -2.30 -3.30 16 12 C -0.52 -14.10 9.46 30.90 0.29 -13.81 16 13 H 0.07 2.03 7.79 -52.49 -0.41 1.62 16 14 C 0.07 1.98 5.49 -17.47 -0.10 1.88 16 15 N -0.87 -24.89 13.22 55.48 0.73 -24.16 16 16 Si 0.92 20.89 29.55 -169.99 -5.02 15.87 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 C -0.05 -0.83 9.41 -39.53 -0.37 -1.20 16 21 C -0.14 -2.05 5.65 -104.54 -0.59 -2.64 16 22 C -0.07 -0.86 5.99 -27.94 -0.17 -1.03 16 23 C -0.14 -1.50 6.08 -28.03 -0.17 -1.67 16 24 C 0.52 7.06 7.46 -11.18 -0.08 6.98 16 25 O -0.53 -8.30 15.83 5.54 0.09 -8.21 16 26 C -0.13 -1.08 7.20 -25.92 -0.19 -1.27 16 27 H 0.05 0.43 7.98 -51.93 -0.41 0.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.00 7.57 -51.93 -0.39 0.61 16 33 H 0.09 1.05 7.56 -51.92 -0.39 0.66 16 34 H 0.09 1.06 7.08 -51.93 -0.37 0.69 16 35 H 0.08 0.90 7.10 -51.92 -0.37 0.53 16 36 H 0.12 1.54 6.05 -52.48 -0.32 1.22 16 37 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 38 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.13 2.30 8.06 -52.49 -0.42 1.88 16 40 H 0.09 0.92 8.06 -51.93 -0.42 0.50 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 376.62 15.07 5.68 5.68 Total: -1.00 -30.30 376.62 -11.38 -41.67 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.86 Total: 1.48 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -3.38 Total: -21.48 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.43 Total: -31.71 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.30 Total: -3.30 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.30 -11.38 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218818417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.847 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds