Wall clock time and date at job start Tue Mar 31 2020 04:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53783 * 113.69231 * 2 1 4 4 C 1.53775 * 87.08046 * 139.98888 * 3 2 1 5 5 C 1.53002 * 113.61483 * 220.01508 * 4 3 2 6 6 N 1.46497 * 109.47221 * 272.50115 * 5 4 3 7 7 C 1.39899 * 119.76821 * 269.72360 * 6 5 4 8 8 C 1.38975 * 120.10353 * 18.58573 * 7 6 5 9 9 C 1.37915 * 120.02198 * 179.97438 * 8 7 6 10 10 C 1.39162 * 119.99298 * 0.02784 * 9 8 7 11 11 S 1.76198 * 120.02457 * 180.02562 * 10 9 8 12 12 C 1.76203 * 100.00056 * 265.46826 * 11 10 9 13 13 H 1.07997 * 119.99502 * 5.11227 * 12 11 10 14 14 C 1.38679 * 119.99746 * 185.11338 * 12 11 10 15 15 N 1.31651 * 120.00185 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99534 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47247 * 89.99865 * 16 14 12 18 18 H 1.48500 * 109.47079 * 210.00151 * 16 14 12 19 19 H 1.48503 * 109.47310 * 329.99760 * 16 14 12 20 20 C 1.38704 * 119.91473 * 359.53665 * 10 9 8 21 21 C 1.37909 * 120.06367 * 0.67210 * 20 10 9 22 22 C 1.50676 * 120.11605 * 179.31052 * 21 20 10 23 23 C 1.52905 * 109.52680 * 146.01133 * 22 21 20 24 24 C 1.34550 * 119.77042 * 90.00337 * 6 5 4 25 25 O 1.21297 * 119.60941 * 0.71039 * 24 6 5 26 26 C 1.53780 * 87.08430 * 334.56871 * 4 3 2 27 27 H 1.08997 * 109.47006 * 320.93948 * 1 2 3 28 28 H 1.09000 * 109.46671 * 80.93480 * 1 2 3 29 29 H 1.08999 * 109.46978 * 200.93407 * 1 2 3 30 30 H 1.08997 * 112.85000 * 228.73076 * 2 1 3 31 31 H 1.08993 * 113.61288 * 254.54058 * 3 2 1 32 32 H 1.08998 * 113.61213 * 25.44229 * 3 2 1 33 33 H 1.09009 * 113.61479 * 89.11475 * 4 3 2 34 34 H 1.08999 * 109.46991 * 32.50408 * 5 4 3 35 35 H 1.09008 * 109.46927 * 152.50265 * 5 4 3 36 36 H 1.08005 * 119.99099 * 359.97438 * 8 7 6 37 37 H 1.07992 * 120.00656 * 180.02562 * 9 8 7 38 38 H 0.97007 * 119.99850 * 180.02562 * 15 14 12 39 39 H 1.07999 * 119.91424 * 179.97438 * 20 10 9 40 40 H 1.09005 * 109.45938 * 25.99932 * 22 21 20 41 41 H 1.08994 * 109.46726 * 266.03103 * 22 21 20 42 42 H 1.09006 * 109.40243 * 288.52458 * 23 22 21 43 43 H 1.08993 * 109.40117 * 168.78477 * 23 22 21 44 44 H 1.08995 * 113.61269 * 270.88224 * 26 4 3 45 45 H 1.09005 * 113.69101 * 139.99277 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1480 1.4082 0.0000 4 6 3.1936 0.8638 0.9874 5 6 3.5489 1.8448 2.1065 6 7 4.6336 2.7226 1.6604 7 6 5.9638 2.3528 1.8863 8 6 6.2815 1.0291 2.1660 9 6 7.5934 0.6664 2.3879 10 6 8.5995 1.6262 2.3323 11 16 10.2760 1.1636 2.6150 12 6 10.4061 1.5210 4.3355 13 1 9.5335 1.8346 4.8893 14 6 11.6289 1.3996 4.9783 15 7 12.6926 1.0178 4.3031 16 14 11.7666 1.7778 6.8025 17 1 11.5131 0.5414 7.5849 18 1 13.1309 2.2822 7.1018 19 1 10.7652 2.8107 7.1708 20 6 8.2819 2.9453 2.0441 21 6 6.9694 3.3082 1.8265 22 6 6.6213 4.7436 1.5286 23 6 5.4401 4.7924 0.5588 24 6 4.3435 3.8814 1.0412 25 8 3.1845 4.1953 0.8694 26 6 2.1460 -0.1848 1.3969 27 1 -0.3633 0.7979 0.6476 28 1 -0.3633 0.1619 -1.0149 29 1 -0.3633 -0.9598 0.3672 30 1 1.9533 -0.6625 -0.7549 31 1 2.5672 1.7010 -0.9625 32 1 1.4975 2.1704 0.4291 33 1 4.0718 0.4374 0.5024 34 1 2.6739 2.4457 2.3543 35 1 3.8700 1.2896 2.9879 36 1 5.5006 0.2842 2.2096 37 1 7.8400 -0.3624 2.6049 38 1 13.5478 0.9325 4.7529 39 1 9.0627 3.6902 2.0013 40 1 7.4812 5.2400 1.0788 41 1 6.3522 5.2518 2.4545 42 1 5.7694 4.4711 -0.4294 43 1 5.0627 5.8132 0.4991 44 1 1.4951 0.1419 2.2078 45 1 2.5624 -1.1784 1.5626 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218818417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:38 Heat of formation + Delta-G solvation = -21.327059 kcal Electronic energy + Delta-G solvation = -25722.482417 eV Core-core repulsion = 22216.020044 eV Total energy + Delta-G solvation = -3506.462373 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.135 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.27567 -40.05022 -39.56083 -36.49995 -35.45156 -34.59440 -31.73810 -30.97906 -30.38045 -28.01407 -27.66964 -26.57179 -25.34956 -23.98466 -23.24567 -21.94336 -20.38117 -20.23920 -19.56062 -18.60626 -17.86226 -17.39650 -16.88035 -16.77987 -16.49440 -15.78388 -15.59250 -15.39307 -15.06253 -14.96095 -14.61725 -14.39588 -14.20812 -14.15628 -13.90129 -13.45270 -13.33904 -13.25983 -13.25083 -13.00592 -12.94281 -12.63842 -12.49128 -12.44959 -11.98970 -11.96816 -11.83160 -11.62367 -11.36377 -11.17686 -11.06078 -10.99115 -10.81019 -10.36017 -9.76451 -8.89226 -8.71103 -8.31199 -6.12333 0.06948 0.40572 1.32637 1.39723 1.45946 1.51086 1.68757 1.81479 2.28604 2.72616 2.98950 3.31693 3.49567 3.56220 3.69821 3.70428 3.72437 3.77350 3.85162 3.99938 4.16338 4.25441 4.33308 4.38982 4.44318 4.51419 4.52707 4.64348 4.73089 4.75211 4.84228 4.85939 4.90275 4.92132 4.93915 5.01477 5.07633 5.11690 5.15867 5.19594 5.25779 5.43915 5.44428 5.55191 5.62763 5.64038 5.83411 6.21720 6.27182 6.88242 7.07147 8.72579 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017232 B = 0.002909 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.484789 B = 9622.159331 C =10384.249768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C -0.123 4.123 4 C -0.128 4.128 5 C 0.113 3.887 6 N -0.545 5.545 7 C 0.162 3.838 8 C -0.149 4.149 9 C -0.063 4.063 10 C -0.136 4.136 11 S -0.093 6.093 12 C -0.530 4.530 13 H 0.067 0.933 14 C 0.021 3.979 15 N -0.907 5.907 16 Si 0.988 3.012 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.266 1.266 20 C -0.055 4.055 21 C -0.130 4.130 22 C -0.071 4.071 23 C -0.131 4.131 24 C 0.514 3.486 25 O -0.554 6.554 26 C -0.119 4.119 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.151 0.849 37 H 0.130 0.870 38 H 0.272 0.728 39 H 0.128 0.872 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.113 0.887 43 H 0.125 0.875 44 H 0.089 0.911 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.699 2.092 -6.885 21.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.132 4.132 3 C -0.160 4.160 4 C -0.147 4.147 5 C -0.008 4.008 6 N -0.267 5.267 7 C 0.067 3.933 8 C -0.171 4.171 9 C -0.084 4.084 10 C -0.248 4.248 11 S 0.142 5.858 12 C -0.678 4.678 13 H 0.085 0.915 14 C -0.185 4.185 15 N -0.544 5.544 16 Si 0.810 3.190 17 H -0.194 1.194 18 H -0.199 1.199 19 H -0.190 1.190 20 C -0.076 4.076 21 C -0.135 4.135 22 C -0.108 4.108 23 C -0.170 4.170 24 C 0.305 3.695 25 O -0.432 6.432 26 C -0.157 4.157 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.169 0.831 37 H 0.148 0.852 38 H 0.081 0.919 39 H 0.146 0.854 40 H 0.127 0.873 41 H 0.103 0.897 42 H 0.131 0.869 43 H 0.143 0.857 44 H 0.108 0.892 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.374 1.831 -7.709 21.860 hybrid contribution -0.211 0.463 1.747 1.820 sum -20.585 2.293 -5.961 21.553 Atomic orbital electron populations 1.21695 0.94113 1.02058 1.01796 1.22459 0.96214 0.96625 0.97858 1.22976 0.97676 0.96870 0.98511 1.22914 0.97909 0.97006 0.96915 1.21848 0.89467 0.91845 0.97653 1.45573 1.04875 1.20863 1.55420 1.17718 0.83062 0.93482 0.99001 1.20953 0.96585 0.94374 1.05167 1.21535 0.91581 0.99399 0.95909 1.22367 0.99895 0.96756 1.05770 1.83492 1.04947 1.84589 1.12816 1.23054 0.97877 1.52917 0.93927 0.91481 1.25925 0.94199 0.94317 1.04013 1.70121 1.00572 1.45388 1.38309 0.85103 0.77929 0.78860 0.77082 1.19396 1.19877 1.19049 1.21283 0.95440 0.95107 0.95742 1.19706 0.91863 0.96290 1.05614 1.20451 0.98884 0.91361 1.00082 1.21745 0.93206 1.00786 1.01277 1.21239 0.90912 0.81038 0.76273 1.90687 1.22355 1.73896 1.56237 1.22956 0.96775 0.98640 0.97305 0.92865 0.92626 0.91652 0.89205 0.93507 0.90623 0.89350 0.89574 0.88805 0.83146 0.85249 0.91865 0.85432 0.87281 0.89700 0.86910 0.85660 0.89206 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.70 71.98 0.70 -1.16 16 2 C -0.11 -1.73 4.36 -10.27 -0.04 -1.78 16 3 C -0.12 -2.40 6.59 31.12 0.21 -2.20 16 4 C -0.13 -2.37 3.46 -10.27 -0.04 -2.40 16 5 C 0.11 2.35 4.52 86.38 0.39 2.74 16 6 N -0.55 -13.32 2.69 -631.77 -1.70 -15.02 16 7 C 0.16 4.46 6.32 38.17 0.24 4.70 16 8 C -0.15 -4.18 8.86 22.37 0.20 -3.99 16 9 C -0.06 -2.21 9.79 22.42 0.22 -1.99 16 10 C -0.14 -5.58 5.44 22.60 0.12 -5.45 16 11 S -0.09 -4.80 21.40 -56.49 -1.21 -6.01 16 12 C -0.53 -29.67 9.46 67.93 0.64 -29.03 16 13 H 0.07 3.72 7.79 -2.91 -0.02 3.70 16 14 C 0.02 1.13 5.49 84.83 0.47 1.60 16 15 N -0.91 -52.98 13.22 21.63 0.29 -52.70 16 16 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 17 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 20 C -0.05 -1.93 9.41 22.30 0.21 -1.72 16 21 C -0.13 -3.72 5.65 -19.81 -0.11 -3.84 16 22 C -0.07 -1.47 5.99 29.81 0.18 -1.30 16 23 C -0.13 -2.49 6.08 29.76 0.18 -2.31 16 24 C 0.51 12.82 7.46 87.63 0.65 13.48 16 25 O -0.55 -16.23 15.83 -3.08 -0.05 -16.28 16 26 C -0.12 -1.72 7.20 31.12 0.22 -1.50 16 27 H 0.05 0.73 7.98 -2.39 -0.02 0.72 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.67 7.57 -2.39 -0.02 1.65 16 33 H 0.09 1.77 7.56 -2.38 -0.02 1.76 16 34 H 0.09 1.89 7.08 -2.39 -0.02 1.87 16 35 H 0.09 1.76 7.10 -2.38 -0.02 1.75 16 36 H 0.15 3.36 6.05 -2.91 -0.02 3.34 16 37 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 38 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 39 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 40 H 0.11 1.91 8.06 -2.38 -0.02 1.89 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.09 1.20 8.06 -2.39 -0.02 1.18 16 45 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -66.69 376.62 4.77 -61.92 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.98 Total: 19.16 kcal Atomic # 6 Polarization: -40.58 SS G_CDS: 4.44 Total: -36.14 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -1.41 Total: -67.72 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.05 Total: -16.28 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -4.80 SS G_CDS: -1.21 Total: -6.01 kcal Total: -66.69 4.77 -61.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218818417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.591 kcal (2) G-P(sol) polarization free energy of solvation -66.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds