Wall clock time and date at job start Tue Mar 31 2020 05:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45205 * 109.46930 * 2 1 4 4 C 1.34223 * 116.99795 * 175.34681 * 3 2 1 5 5 O 1.20825 * 120.00381 * 5.11265 * 4 3 2 6 6 C 1.50702 * 120.00257 * 185.10975 * 4 3 2 7 7 C 1.50704 * 109.70378 * 50.59079 * 6 4 3 8 8 H 1.07990 * 120.00036 * 242.42724 * 7 6 4 9 9 C 1.37877 * 119.99386 * 62.43000 * 7 6 4 10 10 N 1.31517 * 119.99691 * 193.07453 * 9 7 6 11 11 Si 1.86800 * 120.00302 * 13.07728 * 9 7 6 12 12 H 1.48496 * 109.46989 * 84.57835 * 11 9 7 13 13 H 1.48506 * 109.46772 * 204.57666 * 11 9 7 14 14 H 1.48497 * 109.46857 * 324.57411 * 11 9 7 15 15 C 1.53290 * 109.71308 * 171.18100 * 6 4 3 16 16 N 1.46833 * 109.40379 * 173.47821 * 15 6 4 17 17 C 1.46897 * 111.00318 * 170.24442 * 16 15 6 18 18 C 1.50696 * 109.47177 * 170.00303 * 17 16 15 19 19 C 1.38234 * 120.00151 * 89.99944 * 18 17 16 20 20 C 1.38233 * 120.00124 * 180.27774 * 19 18 17 21 21 C 1.38236 * 119.99766 * 359.46988 * 20 19 18 22 22 C 1.38233 * 120.00277 * 0.55594 * 21 20 19 23 23 C 1.38234 * 119.99550 * 359.69635 * 22 21 20 24 24 C 1.46829 * 111.56611 * 294.61513 * 16 15 6 25 25 C 1.53298 * 109.39802 * 65.38191 * 24 16 15 26 26 C 1.51439 * 108.24519 * 306.20472 * 25 24 16 27 27 O 1.20755 * 121.11284 * 229.04607 * 26 25 24 28 28 H 1.08998 * 109.47012 * 184.89721 * 1 2 3 29 29 H 1.09006 * 109.47175 * 304.89778 * 1 2 3 30 30 H 1.08992 * 109.47296 * 64.89624 * 1 2 3 31 31 H 1.08995 * 109.46909 * 240.00380 * 2 1 3 32 32 H 1.09000 * 109.46999 * 119.99792 * 2 1 3 33 33 H 0.96996 * 119.99804 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.48411 * 53.50023 * 15 6 4 35 35 H 1.08996 * 109.48415 * 293.45752 * 15 6 4 36 36 H 1.09001 * 109.46666 * 50.00312 * 17 16 15 37 37 H 1.08997 * 109.47282 * 290.00704 * 17 16 15 38 38 H 1.07998 * 119.99912 * 0.02562 * 19 18 17 39 39 H 1.07996 * 120.00159 * 179.72665 * 20 19 18 40 40 H 1.08002 * 119.99900 * 180.27705 * 21 20 19 41 41 H 1.07993 * 120.00315 * 179.72883 * 22 21 20 42 42 H 1.08004 * 119.99955 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.47995 * 185.35831 * 24 16 15 44 44 H 1.08998 * 109.48380 * 305.40786 * 24 16 15 45 45 H 1.09003 * 109.71023 * 186.52081 * 25 24 16 46 46 H 1.09000 * 109.74437 * 65.91722 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3409 1.5462 0.0970 5 8 4.0805 0.5908 0.0861 6 6 3.9086 2.9369 0.2195 7 6 3.1967 3.6812 1.3197 8 1 2.6302 4.5715 1.0905 9 6 3.2689 3.2253 2.6189 10 7 2.4544 3.7085 3.5315 11 14 4.5235 1.9214 3.0830 12 1 5.8256 2.5707 3.3796 13 1 4.0520 1.1862 4.2840 14 1 4.6899 0.9708 1.9543 15 6 5.4068 2.8580 0.5340 16 7 5.9845 4.2074 0.4977 17 6 7.3588 4.2058 1.0167 18 6 8.0017 5.5404 0.7402 19 6 7.8995 6.5620 1.6659 20 6 8.4843 7.7880 1.4096 21 6 9.1807 7.9890 0.2325 22 6 9.2825 6.9677 -0.6934 23 6 8.6932 5.7433 -0.4395 24 6 5.9328 4.7805 -0.8531 25 6 4.4702 4.9898 -1.2617 26 6 3.7376 3.6754 -1.0915 27 8 3.0406 3.2310 -1.9718 28 1 -0.3633 -1.0239 0.0877 29 1 -0.3634 0.5880 0.8429 30 1 -0.3633 0.4360 -0.9305 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.5054 3.3881 4.4456 34 1 5.9014 2.2307 -0.2077 35 1 5.5479 2.4286 1.5258 36 1 7.9312 3.4182 0.5268 37 1 7.3409 4.0269 2.0918 38 1 7.3592 6.4035 2.5875 39 1 8.4007 8.5874 2.1309 40 1 9.6415 8.9455 0.0343 41 1 9.8228 7.1262 -1.6150 42 1 8.7730 4.9452 -1.1627 43 1 6.4534 5.7381 -0.8618 44 1 6.4126 4.0991 -1.5557 45 1 4.4213 5.3056 -2.3039 46 1 4.0153 5.7493 -0.6258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309655059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:58 Heat of formation + Delta-G solvation = -61.929308 kcal Electronic energy + Delta-G solvation = -29958.177533 eV Core-core repulsion = 26007.201643 eV Total energy + Delta-G solvation = -3950.975890 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.46686 -39.45566 -38.53795 -36.99371 -35.76013 -33.68525 -32.22230 -31.28168 -30.96948 -30.72392 -30.02127 -25.76892 -24.78555 -24.04508 -22.64574 -22.41042 -22.18563 -21.09970 -20.21784 -18.32422 -17.48302 -16.72457 -16.42036 -16.16435 -15.85138 -15.49713 -15.28265 -15.01522 -14.88636 -14.36115 -14.19055 -13.91277 -13.53141 -13.34976 -13.33704 -13.28547 -12.75841 -12.70872 -12.48205 -12.30925 -12.11463 -12.04438 -11.65907 -11.48166 -11.26972 -11.08594 -10.92856 -10.87275 -10.77238 -10.74199 -10.54036 -10.12769 -9.86201 -9.41683 -9.31299 -8.85834 -8.77370 -8.64290 -8.46066 -7.80155 -6.32691 -4.33166 1.35868 1.45852 2.62723 3.09087 3.12573 3.29062 3.39119 3.51069 3.80092 4.22270 4.39988 4.75720 4.80181 4.90321 4.96271 5.02674 5.14763 5.32146 5.36507 5.39716 5.42768 5.44605 5.52257 5.56344 5.64921 5.71989 5.74895 5.81728 5.86398 5.90992 6.02317 6.05791 6.08980 6.13226 6.21223 6.25713 6.33556 6.42644 6.46421 6.48781 6.55370 6.72814 7.03461 7.07570 7.33005 7.36492 7.46619 8.06860 8.19550 8.66025 8.75277 9.24185 10.77788 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016756 B = 0.004372 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.635495 B = 6402.187300 C = 7111.273832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.324 6.324 4 C 0.480 3.520 5 O -0.536 6.536 6 C 0.014 3.986 7 C -0.485 4.485 8 H 0.092 0.908 9 C 0.097 3.903 10 N -0.868 5.868 11 Si 0.821 3.179 12 H -0.268 1.268 13 H -0.295 1.295 14 H -0.220 1.220 15 C 0.077 3.923 16 N -0.509 5.509 17 C 0.091 3.909 18 C -0.074 4.074 19 C -0.094 4.094 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.116 4.116 24 C 0.058 3.942 25 C -0.154 4.154 26 C 0.392 3.608 27 O -0.467 6.467 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.270 0.730 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.040 0.960 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.091 0.909 44 H 0.029 0.971 45 H 0.084 0.916 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.596 3.727 -5.740 11.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.017 4.017 3 O -0.239 6.239 4 C 0.325 3.675 5 O -0.427 6.427 6 C 0.011 3.989 7 C -0.522 4.522 8 H 0.110 0.890 9 C -0.109 4.109 10 N -0.503 5.503 11 Si 0.650 3.350 12 H -0.194 1.194 13 H -0.223 1.223 14 H -0.144 1.144 15 C -0.050 4.050 16 N -0.232 5.232 17 C -0.036 4.036 18 C -0.074 4.074 19 C -0.112 4.112 20 C -0.139 4.139 21 C -0.143 4.143 22 C -0.143 4.143 23 C -0.135 4.135 24 C -0.070 4.070 25 C -0.192 4.192 26 C 0.268 3.732 27 O -0.341 6.341 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.105 0.895 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.109 0.891 44 H 0.047 0.953 45 H 0.103 0.897 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.037 3.469 -5.728 11.248 hybrid contribution 1.170 -1.336 0.208 1.788 sum 10.208 2.133 -5.520 11.799 Atomic orbital electron populations 1.21746 0.93232 1.01986 1.03620 1.22862 0.95206 0.82282 1.01360 1.86630 1.24950 1.29642 1.82716 1.24332 0.80395 0.92773 0.70025 1.90546 1.60316 1.44208 1.47609 1.19209 0.93789 0.88421 0.97508 1.19968 1.31578 1.12305 0.88308 0.89019 1.24751 0.94537 0.95437 0.96164 1.69849 1.34474 1.42759 1.03168 0.88033 0.82823 0.84150 0.80034 1.19430 1.22304 1.14410 1.22307 0.93545 0.87884 1.01276 1.61625 1.17049 1.22227 1.22331 1.21116 0.88063 0.92864 1.01558 1.19797 0.97317 0.95888 0.94443 1.21145 0.97968 0.92490 0.99633 1.21161 0.98080 0.97264 0.97404 1.21110 0.99786 0.98864 0.94529 1.21053 1.00363 0.93484 0.99361 1.21090 0.98120 0.97533 0.96733 1.22195 0.95383 1.00495 0.88914 1.22251 0.96258 0.97945 1.02725 1.24564 0.76359 0.86551 0.85736 1.90339 1.32487 1.67947 1.43309 0.91146 0.91131 0.91773 0.92239 0.92168 0.92011 0.94899 0.90555 0.94188 0.89549 0.85452 0.86160 0.86467 0.86368 0.86381 0.89056 0.95259 0.89709 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 10.29 37.16 0.38 -1.89 16 2 C 0.06 1.10 6.21 37.16 0.23 1.33 16 3 O -0.32 -7.80 9.75 -41.64 -0.41 -8.20 16 4 C 0.48 11.91 4.34 36.01 0.16 12.07 16 5 O -0.54 -13.49 13.53 -18.75 -0.25 -13.75 16 6 C 0.01 0.33 0.46 -157.45 -0.07 0.26 16 7 C -0.48 -12.69 8.07 -34.44 -0.28 -12.97 16 8 H 0.09 2.57 7.99 -52.49 -0.42 2.15 16 9 C 0.10 2.63 5.37 -17.82 -0.10 2.54 16 10 N -0.87 -24.80 13.96 55.43 0.77 -24.03 16 11 Si 0.82 20.11 23.58 -169.99 -4.01 16.10 16 12 H -0.27 -6.19 7.05 56.52 0.40 -5.79 16 13 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 14 H -0.22 -5.45 3.78 56.52 0.21 -5.24 16 15 C 0.08 1.65 3.02 -3.71 -0.01 1.63 16 16 N -0.51 -9.31 4.47 -235.82 -1.05 -10.37 16 17 C 0.09 1.42 5.41 -4.98 -0.03 1.40 16 18 C -0.07 -1.01 4.12 -104.63 -0.43 -1.44 16 19 C -0.09 -1.24 9.70 -39.58 -0.38 -1.62 16 20 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 21 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 22 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 23 C -0.12 -1.37 7.72 -39.58 -0.31 -1.68 16 24 C 0.06 0.92 4.73 -3.71 -0.02 0.90 16 25 C -0.15 -2.63 6.22 -27.37 -0.17 -2.80 16 26 C 0.39 8.49 5.91 -28.31 -0.17 8.32 16 27 O -0.47 -10.96 16.82 3.71 0.06 -10.90 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.03 0.68 7.75 -51.93 -0.40 0.28 16 35 H 0.08 1.74 2.11 -51.93 -0.11 1.63 16 36 H 0.04 0.58 8.02 -51.93 -0.42 0.16 16 37 H 0.09 1.42 8.09 -51.93 -0.42 1.00 16 38 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 42 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 43 H 0.09 1.29 5.35 -51.93 -0.28 1.02 16 44 H 0.03 0.44 8.10 -51.93 -0.42 0.02 16 45 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.11 1.99 8.14 -51.93 -0.42 1.56 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -31.62 364.72 -8.64 -40.26 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.86 Total: 4.50 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -2.38 Total: 0.89 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: -0.28 Total: -34.39 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.60 Total: -32.85 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.01 Total: 16.10 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.62 -8.64 -40.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309655059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.672 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds