Wall clock time and date at job start Tue Mar 31 2020 05:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45205 * 109.46930 * 2 1 4 4 C 1.34223 * 116.99795 * 175.34681 * 3 2 1 5 5 O 1.20825 * 120.00381 * 5.11265 * 4 3 2 6 6 C 1.50702 * 120.00257 * 185.10975 * 4 3 2 7 7 C 1.50704 * 109.70378 * 50.59079 * 6 4 3 8 8 H 1.07990 * 120.00036 * 242.42724 * 7 6 4 9 9 C 1.37877 * 119.99386 * 62.43000 * 7 6 4 10 10 N 1.31517 * 119.99691 * 193.07453 * 9 7 6 11 11 Si 1.86800 * 120.00302 * 13.07728 * 9 7 6 12 12 H 1.48496 * 109.46989 * 84.57835 * 11 9 7 13 13 H 1.48506 * 109.46772 * 204.57666 * 11 9 7 14 14 H 1.48497 * 109.46857 * 324.57411 * 11 9 7 15 15 C 1.53290 * 109.71308 * 171.18100 * 6 4 3 16 16 N 1.46833 * 109.40379 * 173.47821 * 15 6 4 17 17 C 1.46897 * 111.00318 * 170.24442 * 16 15 6 18 18 C 1.50696 * 109.47177 * 170.00303 * 17 16 15 19 19 C 1.38234 * 120.00151 * 89.99944 * 18 17 16 20 20 C 1.38233 * 120.00124 * 180.27774 * 19 18 17 21 21 C 1.38236 * 119.99766 * 359.46988 * 20 19 18 22 22 C 1.38233 * 120.00277 * 0.55594 * 21 20 19 23 23 C 1.38234 * 119.99550 * 359.69635 * 22 21 20 24 24 C 1.46829 * 111.56611 * 294.61513 * 16 15 6 25 25 C 1.53298 * 109.39802 * 65.38191 * 24 16 15 26 26 C 1.51439 * 108.24519 * 306.20472 * 25 24 16 27 27 O 1.20755 * 121.11284 * 229.04607 * 26 25 24 28 28 H 1.08998 * 109.47012 * 184.89721 * 1 2 3 29 29 H 1.09006 * 109.47175 * 304.89778 * 1 2 3 30 30 H 1.08992 * 109.47296 * 64.89624 * 1 2 3 31 31 H 1.08995 * 109.46909 * 240.00380 * 2 1 3 32 32 H 1.09000 * 109.46999 * 119.99792 * 2 1 3 33 33 H 0.96996 * 119.99804 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.48411 * 53.50023 * 15 6 4 35 35 H 1.08996 * 109.48415 * 293.45752 * 15 6 4 36 36 H 1.09001 * 109.46666 * 50.00312 * 17 16 15 37 37 H 1.08997 * 109.47282 * 290.00704 * 17 16 15 38 38 H 1.07998 * 119.99912 * 0.02562 * 19 18 17 39 39 H 1.07996 * 120.00159 * 179.72665 * 20 19 18 40 40 H 1.08002 * 119.99900 * 180.27705 * 21 20 19 41 41 H 1.07993 * 120.00315 * 179.72883 * 22 21 20 42 42 H 1.08004 * 119.99955 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.47995 * 185.35831 * 24 16 15 44 44 H 1.08998 * 109.48380 * 305.40786 * 24 16 15 45 45 H 1.09003 * 109.71023 * 186.52081 * 25 24 16 46 46 H 1.09000 * 109.74437 * 65.91722 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3409 1.5462 0.0970 5 8 4.0805 0.5908 0.0861 6 6 3.9086 2.9369 0.2195 7 6 3.1967 3.6812 1.3197 8 1 2.6302 4.5715 1.0905 9 6 3.2689 3.2253 2.6189 10 7 2.4544 3.7085 3.5315 11 14 4.5235 1.9214 3.0830 12 1 5.8256 2.5707 3.3796 13 1 4.0520 1.1862 4.2840 14 1 4.6899 0.9708 1.9543 15 6 5.4068 2.8580 0.5340 16 7 5.9845 4.2074 0.4977 17 6 7.3588 4.2058 1.0167 18 6 8.0017 5.5404 0.7402 19 6 7.8995 6.5620 1.6659 20 6 8.4843 7.7880 1.4096 21 6 9.1807 7.9890 0.2325 22 6 9.2825 6.9677 -0.6934 23 6 8.6932 5.7433 -0.4395 24 6 5.9328 4.7805 -0.8531 25 6 4.4702 4.9898 -1.2617 26 6 3.7376 3.6754 -1.0915 27 8 3.0406 3.2310 -1.9718 28 1 -0.3633 -1.0239 0.0877 29 1 -0.3634 0.5880 0.8429 30 1 -0.3633 0.4360 -0.9305 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.5054 3.3881 4.4456 34 1 5.9014 2.2307 -0.2077 35 1 5.5479 2.4286 1.5258 36 1 7.9312 3.4182 0.5268 37 1 7.3409 4.0269 2.0918 38 1 7.3592 6.4035 2.5875 39 1 8.4007 8.5874 2.1309 40 1 9.6415 8.9455 0.0343 41 1 9.8228 7.1262 -1.6150 42 1 8.7730 4.9452 -1.1627 43 1 6.4534 5.7381 -0.8618 44 1 6.4126 4.0991 -1.5557 45 1 4.4213 5.3056 -2.3039 46 1 4.0153 5.7493 -0.6258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309655059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:57 Heat of formation + Delta-G solvation = -81.435153 kcal Electronic energy + Delta-G solvation = -29959.023370 eV Core-core repulsion = 26007.201643 eV Total energy + Delta-G solvation = -3951.821727 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.19155 -40.70769 -40.05886 -38.47905 -37.52477 -35.50755 -33.70747 -32.86390 -32.36582 -31.68617 -31.32237 -27.17095 -26.41086 -25.79454 -23.98334 -23.79149 -23.27448 -22.49235 -21.55495 -20.10027 -19.30792 -18.23417 -18.02730 -17.75197 -17.34150 -17.15799 -16.59415 -16.36781 -16.18715 -15.71654 -15.66924 -15.33506 -15.16651 -15.05832 -14.98517 -14.35039 -14.19892 -14.10258 -13.74961 -13.68871 -13.53009 -13.31721 -13.09980 -13.01168 -12.71524 -12.63324 -12.51689 -12.34595 -12.23970 -12.11417 -11.78433 -11.73159 -11.56420 -11.36479 -11.16737 -10.72759 -10.28618 -9.71436 -9.64873 -9.15041 -8.44949 -6.46325 0.46229 0.59146 0.91599 1.15207 1.18559 1.28512 1.40766 1.84129 2.18294 2.75327 2.87513 3.12721 3.21592 3.64970 3.88022 3.89311 3.95520 3.98309 4.02160 4.09534 4.16045 4.22313 4.24168 4.27609 4.30088 4.38005 4.44946 4.52920 4.62191 4.72188 4.79081 4.81347 4.85722 4.87978 4.88546 5.03368 5.11019 5.15885 5.17554 5.25462 5.53068 5.63433 5.70881 5.78934 5.94499 6.01484 6.11311 6.19682 6.42160 6.53000 6.86417 7.13161 8.68844 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016756 B = 0.004372 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.635495 B = 6402.187300 C = 7111.273832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.045 3.955 3 O -0.348 6.348 4 C 0.472 3.528 5 O -0.547 6.547 6 C 0.000 4.000 7 C -0.471 4.471 8 H 0.064 0.936 9 C 0.060 3.940 10 N -0.909 5.909 11 Si 0.869 3.131 12 H -0.250 1.250 13 H -0.306 1.306 14 H -0.224 1.224 15 C 0.085 3.915 16 N -0.526 5.526 17 C 0.092 3.908 18 C -0.089 4.089 19 C -0.114 4.114 20 C -0.126 4.126 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.119 4.119 24 C 0.063 3.937 25 C -0.145 4.145 26 C 0.387 3.613 27 O -0.490 6.490 28 H 0.110 0.890 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.270 0.730 34 H 0.038 0.962 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.135 0.865 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.131 0.869 43 H 0.114 0.886 44 H 0.046 0.954 45 H 0.117 0.883 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.599 4.564 -7.629 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 O -0.263 6.263 4 C 0.318 3.682 5 O -0.439 6.439 6 C -0.003 4.003 7 C -0.509 4.509 8 H 0.082 0.918 9 C -0.143 4.143 10 N -0.546 5.546 11 Si 0.697 3.303 12 H -0.175 1.175 13 H -0.235 1.235 14 H -0.148 1.148 15 C -0.042 4.042 16 N -0.250 5.250 17 C -0.034 4.034 18 C -0.089 4.089 19 C -0.133 4.133 20 C -0.144 4.144 21 C -0.139 4.139 22 C -0.139 4.139 23 C -0.137 4.137 24 C -0.065 4.065 25 C -0.183 4.183 26 C 0.265 3.735 27 O -0.365 6.365 28 H 0.128 0.872 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.130 0.870 39 H 0.153 0.847 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.149 0.851 43 H 0.132 0.868 44 H 0.064 0.936 45 H 0.135 0.865 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.059 4.318 -7.625 14.110 hybrid contribution 0.509 -1.569 0.735 1.805 sum 11.568 2.749 -6.891 13.743 Atomic orbital electron populations 1.21783 0.90238 1.04349 1.03358 1.23299 0.97657 0.80222 1.01728 1.86610 1.24653 1.32615 1.82422 1.24523 0.80748 0.93114 0.69851 1.90515 1.60530 1.44545 1.48275 1.19400 0.95018 0.87943 0.97962 1.19907 1.30660 1.11228 0.89059 0.91826 1.25243 0.95712 0.97024 0.96291 1.69940 1.36279 1.44761 1.03574 0.87285 0.81917 0.82253 0.78833 1.17550 1.23517 1.14837 1.22083 0.92046 0.89848 1.00270 1.61562 1.18950 1.20303 1.24164 1.21089 0.86916 0.94882 1.00518 1.19649 0.98736 0.94828 0.95730 1.21170 0.99037 0.93657 0.99439 1.21383 0.97813 0.96825 0.98406 1.21481 0.98691 1.00057 0.93671 1.21404 0.99548 0.92684 1.00282 1.21242 0.97744 0.98617 0.96109 1.22270 0.94539 1.01782 0.87876 1.22300 0.96424 0.94808 1.04765 1.25001 0.76164 0.87841 0.84497 1.90321 1.33594 1.68860 1.43746 0.87201 0.92400 0.91191 0.91109 0.92541 0.92007 0.94394 0.92198 0.92945 0.91279 0.87018 0.84664 0.83723 0.83590 0.85134 0.86808 0.93622 0.86476 0.87026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 10.29 71.98 0.74 -3.39 16 2 C 0.04 1.70 6.21 71.98 0.45 2.15 16 3 O -0.35 -16.97 9.75 -49.05 -0.48 -17.45 16 4 C 0.47 23.67 4.34 71.24 0.31 23.98 16 5 O -0.55 -27.60 13.53 21.97 0.30 -27.31 16 6 C 0.00 0.00 0.46 -54.08 -0.03 -0.02 16 7 C -0.47 -25.33 8.07 25.60 0.21 -25.12 16 8 H 0.06 3.71 7.99 -2.92 -0.02 3.69 16 9 C 0.06 3.32 5.37 84.65 0.45 3.77 16 10 N -0.91 -53.64 13.96 21.45 0.30 -53.34 16 11 Si 0.87 42.78 23.58 68.60 1.62 44.40 16 12 H -0.25 -11.41 7.05 99.48 0.70 -10.71 16 13 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 14 H -0.22 -11.13 3.78 99.48 0.38 -10.76 16 15 C 0.09 3.61 3.02 86.41 0.26 3.87 16 16 N -0.53 -18.74 4.47 -899.99 -4.02 -22.76 16 17 C 0.09 2.80 5.41 85.56 0.46 3.26 16 18 C -0.09 -2.27 4.12 -19.87 -0.08 -2.35 16 19 C -0.11 -2.92 9.70 22.27 0.22 -2.70 16 20 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 21 C -0.12 -2.05 10.05 22.27 0.22 -1.82 16 22 C -0.12 -2.04 10.05 22.27 0.22 -1.82 16 23 C -0.12 -2.41 7.72 22.27 0.17 -2.24 16 24 C 0.06 1.83 4.73 86.42 0.41 2.23 16 25 C -0.15 -4.71 6.22 30.18 0.19 -4.52 16 26 C 0.39 16.62 5.91 29.57 0.17 16.80 16 27 O -0.49 -22.86 16.82 0.75 0.01 -22.85 16 28 H 0.11 2.35 8.14 -2.39 -0.02 2.34 16 29 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.06 2.16 8.10 -2.39 -0.02 2.14 16 33 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.04 1.55 7.75 -2.39 -0.02 1.53 16 35 H 0.06 2.72 2.11 -2.39 -0.01 2.71 16 36 H 0.05 1.44 8.02 -2.39 -0.02 1.42 16 37 H 0.07 2.28 8.09 -2.39 -0.02 2.26 16 38 H 0.11 3.09 8.06 -2.91 -0.02 3.07 16 39 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 40 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 41 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 42 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 43 H 0.11 2.86 5.35 -2.39 -0.01 2.85 16 44 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 45 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 46 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 Total: -1.00 -70.43 364.72 2.98 -67.46 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.64 Total: 22.15 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 4.61 Total: 9.71 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -3.72 Total: -76.11 kcal Atomic # 8 Polarization: -67.43 SS G_CDS: -0.17 Total: -67.60 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.62 Total: 44.40 kcal Total: -70.43 2.98 -67.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309655059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.977 kcal (2) G-P(sol) polarization free energy of solvation -70.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds