Wall clock time and date at job start Tue Mar 31 2020 05:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45200 * 109.47029 * 2 1 4 4 C 1.34230 * 117.00029 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00005 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00054 * 179.97438 * 4 3 2 7 7 C 1.50697 * 109.70742 * 300.58699 * 6 4 3 8 8 H 1.08008 * 119.99672 * 239.41326 * 7 6 4 9 9 C 1.37875 * 120.00287 * 59.41416 * 7 6 4 10 10 N 1.31515 * 119.99595 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00143 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47253 * 60.00116 * 11 9 7 13 13 H 1.48497 * 109.47159 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47194 * 299.99976 * 11 9 7 15 15 C 1.53302 * 109.71114 * 179.97438 * 6 4 3 16 16 N 1.46827 * 109.40298 * 186.47810 * 15 6 4 17 17 C 1.46893 * 111.00120 * 189.75104 * 16 15 6 18 18 C 1.50706 * 109.47176 * 169.99875 * 17 16 15 19 19 C 1.38236 * 119.99994 * 269.73374 * 18 17 16 20 20 C 1.38231 * 119.99630 * 179.81064 * 19 18 17 21 21 C 1.38243 * 120.00300 * 0.38999 * 20 19 18 22 22 C 1.38236 * 119.99809 * 359.86292 * 21 20 19 23 23 C 1.38235 * 119.99821 * 359.95068 * 22 21 20 24 24 C 1.46836 * 111.56241 * 65.38903 * 16 15 6 25 25 C 1.53303 * 109.39883 * 294.61124 * 24 16 15 26 26 C 1.51436 * 108.23970 * 53.79723 * 25 24 16 27 27 O 1.20763 * 121.11169 * 130.94907 * 26 25 24 28 28 H 1.08998 * 109.47193 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47334 * 299.99943 * 1 2 3 30 30 H 1.09004 * 109.47049 * 59.99937 * 1 2 3 31 31 H 1.09004 * 109.47334 * 240.00057 * 2 1 3 32 32 H 1.09000 * 109.47295 * 119.99616 * 2 1 3 33 33 H 0.96998 * 119.99653 * 180.02562 * 10 9 7 34 34 H 1.08996 * 109.47845 * 66.49851 * 15 6 4 35 35 H 1.08998 * 109.48171 * 306.45954 * 15 6 4 36 36 H 1.09001 * 109.46739 * 50.00284 * 17 16 15 37 37 H 1.09000 * 109.47767 * 290.00543 * 17 16 15 38 38 H 1.07997 * 120.00153 * 359.97438 * 19 18 17 39 39 H 1.08004 * 120.00269 * 180.22984 * 20 19 18 40 40 H 1.08001 * 119.99997 * 179.83493 * 21 20 19 41 41 H 1.07991 * 120.00122 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.00272 * 180.02562 * 23 22 21 43 43 H 1.08996 * 109.48222 * 54.59178 * 24 16 15 44 44 H 1.09003 * 109.47697 * 174.63782 * 24 16 15 45 45 H 1.08999 * 109.70780 * 294.10829 * 25 24 16 46 46 H 1.08997 * 109.70973 * 173.48441 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9374 -0.0012 7 6 3.4473 3.6826 -1.2225 8 1 4.1649 4.0674 -1.9321 9 6 2.0983 3.8731 -1.4341 10 7 1.2246 3.4049 -0.5698 11 14 1.5116 4.7961 -2.9484 12 1 1.9695 4.0857 -4.1695 13 1 0.0282 4.8641 -2.9429 14 1 2.0708 6.1718 -2.9371 15 6 5.4519 2.8636 -0.0010 16 7 6.0053 4.2147 0.1546 17 6 7.4569 4.2181 -0.0707 18 6 7.9501 5.6402 -0.1466 19 6 7.9978 6.2911 -1.3652 20 6 8.4465 7.5968 -1.4341 21 6 8.8551 8.2489 -0.2857 22 6 8.8123 7.5961 0.9321 23 6 8.3599 6.2918 1.0016 24 6 5.6752 4.7852 1.4667 25 6 4.1591 4.9895 1.5662 26 6 3.4815 3.6732 1.2475 27 8 2.6200 3.2251 1.9654 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.2755 3.5386 -0.7189 34 1 5.7952 2.4364 -0.9432 35 1 5.7855 2.2366 0.8257 36 1 7.6804 3.7056 -1.0064 37 1 7.9537 3.7047 0.7524 38 1 7.6821 5.7805 -2.2629 39 1 8.4803 8.1067 -2.3856 40 1 9.2082 9.2681 -0.3400 41 1 9.1318 8.1054 1.8292 42 1 8.3261 5.7819 1.9531 43 1 6.0026 4.1041 2.2521 44 1 6.1797 5.7444 1.5833 45 1 3.8427 5.7486 0.8507 46 1 3.8960 5.3034 2.5763 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309655060.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:01 Heat of formation + Delta-G solvation = -76.484662 kcal Electronic energy + Delta-G solvation = -29858.596365 eV Core-core repulsion = 25906.989307 eV Total energy + Delta-G solvation = -3951.607057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.89649 -39.16452 -38.01653 -36.55020 -35.16211 -33.50832 -32.11270 -30.90851 -30.71821 -30.42259 -29.63450 -25.61886 -24.68221 -23.79118 -22.49895 -21.98427 -21.63465 -20.82287 -19.86756 -18.36436 -16.84942 -16.66170 -16.00485 -15.78391 -15.28422 -15.12317 -15.10430 -14.61060 -14.54954 -14.14259 -13.89669 -13.71927 -13.47103 -13.28956 -12.87251 -12.67287 -12.57958 -12.37553 -12.20423 -11.99025 -11.84415 -11.54734 -11.34567 -11.00855 -10.98393 -10.91008 -10.80919 -10.76259 -10.68211 -10.54979 -10.47435 -10.12626 -9.57597 -9.25518 -9.11529 -8.80371 -8.69756 -8.58761 -8.02596 -7.76189 -6.10787 -4.29584 1.43907 1.51626 3.23404 3.30603 3.31773 3.40216 3.70730 3.79255 4.11548 4.31855 4.58034 4.91093 4.95458 5.08093 5.10671 5.19575 5.26740 5.43429 5.59114 5.61373 5.65170 5.73360 5.76089 5.79025 5.86919 5.91281 5.94771 6.05076 6.11630 6.12355 6.14444 6.16444 6.28940 6.38782 6.54135 6.55741 6.59820 6.62126 6.70676 6.78387 6.82097 6.99597 7.10212 7.49557 7.50560 7.72805 7.82867 7.96537 8.69830 8.90217 9.32682 9.34649 10.83487 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015267 B = 0.004193 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.579070 B = 6676.320415 C = 7469.193376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.042 3.958 3 O -0.253 6.253 4 C 0.485 3.515 5 O -0.575 6.575 6 C 0.045 3.955 7 C -0.504 4.504 8 H 0.083 0.917 9 C 0.057 3.943 10 N -0.809 5.809 11 Si 0.901 3.099 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.093 3.907 16 N -0.517 5.517 17 C 0.093 3.907 18 C -0.067 4.067 19 C -0.095 4.095 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.124 4.124 23 C -0.116 4.116 24 C 0.063 3.937 25 C -0.154 4.154 26 C 0.383 3.617 27 O -0.456 6.456 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.268 0.732 34 H 0.081 0.919 35 H 0.026 0.974 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.125 0.875 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.027 0.973 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.884 5.203 1.243 11.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.034 4.034 3 O -0.164 6.164 4 C 0.331 3.669 5 O -0.470 6.470 6 C 0.042 3.958 7 C -0.540 4.540 8 H 0.101 0.899 9 C -0.152 4.152 10 N -0.442 5.442 11 Si 0.728 3.272 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.035 4.035 16 N -0.241 5.241 17 C -0.035 4.035 18 C -0.067 4.067 19 C -0.113 4.113 20 C -0.141 4.141 21 C -0.145 4.145 22 C -0.142 4.142 23 C -0.135 4.135 24 C -0.065 4.065 25 C -0.192 4.192 26 C 0.257 3.743 27 O -0.329 6.329 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.044 0.956 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.143 0.857 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.045 0.955 44 H 0.099 0.901 45 H 0.123 0.877 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.123 4.925 1.342 10.454 hybrid contribution -0.103 -0.122 -0.348 0.383 sum 9.020 4.804 0.995 10.267 Atomic orbital electron populations 1.21585 0.94024 1.00461 1.03301 1.22800 0.94974 0.85720 0.99940 1.87553 1.22604 1.24911 1.81313 1.24695 0.81190 0.91967 0.69039 1.90463 1.61708 1.44060 1.50766 1.18710 0.91170 0.88596 0.97367 1.20558 0.91999 1.36645 1.04839 0.89917 1.25231 0.97055 0.95704 0.97227 1.69956 1.02154 1.38282 1.33805 0.86493 0.77468 0.80452 0.82828 1.20148 1.21260 1.19838 1.21855 0.93793 0.86847 1.00966 1.61596 1.09390 1.22876 1.30209 1.21033 0.88414 0.92400 1.01621 1.19813 0.97518 0.96140 0.93268 1.21078 0.97886 0.94585 0.97754 1.21139 0.99552 0.95062 0.98303 1.21085 1.00836 0.99630 0.92940 1.21053 1.00586 0.94982 0.97625 1.21068 0.99494 0.95058 0.97884 1.22091 0.95590 0.99684 0.89169 1.22186 0.95056 0.99675 1.02281 1.24813 0.79812 0.86429 0.83227 1.90283 1.25912 1.68106 1.48610 0.92439 0.91891 0.92015 0.93443 0.93526 0.92139 0.90036 0.95610 0.89727 0.94393 0.85736 0.86350 0.86604 0.86489 0.86422 0.95524 0.90103 0.87716 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 10.29 37.15 0.38 -2.06 16 2 C 0.04 0.89 6.19 37.15 0.23 1.12 16 3 O -0.25 -6.52 5.94 -44.36 -0.26 -6.78 16 4 C 0.49 12.65 6.15 36.00 0.22 12.87 16 5 O -0.58 -15.19 15.66 -18.75 -0.29 -15.48 16 6 C 0.04 1.07 0.49 -157.45 -0.08 0.99 16 7 C -0.50 -12.55 7.66 -34.44 -0.26 -12.81 16 8 H 0.08 2.03 7.75 -52.48 -0.41 1.62 16 9 C 0.06 1.44 5.09 -17.82 -0.09 1.35 16 10 N -0.81 -21.33 8.75 55.43 0.49 -20.84 16 11 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 15 C 0.09 1.90 3.53 -3.71 -0.01 1.89 16 16 N -0.52 -9.03 4.32 -235.80 -1.02 -10.05 16 17 C 0.09 1.31 5.13 -4.98 -0.03 1.29 16 18 C -0.07 -0.88 4.89 -104.62 -0.51 -1.40 16 19 C -0.09 -1.22 9.70 -39.58 -0.38 -1.60 16 20 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 21 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 22 C -0.12 -1.36 10.05 -39.58 -0.40 -1.75 16 23 C -0.12 -1.39 7.83 -39.58 -0.31 -1.70 16 24 C 0.06 1.04 5.27 -3.70 -0.02 1.02 16 25 C -0.15 -2.96 6.22 -27.36 -0.17 -3.13 16 26 C 0.38 9.11 4.98 -28.31 -0.14 8.97 16 27 O -0.46 -12.17 16.02 -7.58 -0.12 -12.29 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 32 H 0.05 0.98 8.13 -51.93 -0.42 0.55 16 33 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.08 1.66 7.94 -51.93 -0.41 1.25 16 35 H 0.03 0.53 7.88 -51.93 -0.41 0.12 16 36 H 0.08 1.15 7.88 -51.93 -0.41 0.74 16 37 H 0.04 0.50 8.07 -51.93 -0.42 0.08 16 38 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 39 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 42 H 0.12 1.26 7.89 -52.49 -0.41 0.85 16 43 H 0.03 0.43 8.10 -51.93 -0.42 0.01 16 44 H 0.08 1.18 5.48 -51.93 -0.28 0.90 16 45 H 0.10 2.09 8.14 -51.93 -0.42 1.67 16 46 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -30.20 373.59 -9.93 -40.13 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.96 Total: 3.25 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -2.37 Total: 1.48 kcal Atomic # 7 Polarization: -30.36 SS G_CDS: -0.53 Total: -30.89 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.68 Total: -34.55 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.20 -9.93 -40.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309655060.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.357 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds