Wall clock time and date at job start Tue Mar 31 2020 05:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45200 * 109.47029 * 2 1 4 4 C 1.34230 * 117.00029 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00005 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00054 * 179.97438 * 4 3 2 7 7 C 1.50697 * 109.70742 * 300.58699 * 6 4 3 8 8 H 1.08008 * 119.99672 * 239.41326 * 7 6 4 9 9 C 1.37875 * 120.00287 * 59.41416 * 7 6 4 10 10 N 1.31515 * 119.99595 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00143 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47253 * 60.00116 * 11 9 7 13 13 H 1.48497 * 109.47159 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47194 * 299.99976 * 11 9 7 15 15 C 1.53302 * 109.71114 * 179.97438 * 6 4 3 16 16 N 1.46827 * 109.40298 * 186.47810 * 15 6 4 17 17 C 1.46893 * 111.00120 * 189.75104 * 16 15 6 18 18 C 1.50706 * 109.47176 * 169.99875 * 17 16 15 19 19 C 1.38236 * 119.99994 * 269.73374 * 18 17 16 20 20 C 1.38231 * 119.99630 * 179.81064 * 19 18 17 21 21 C 1.38243 * 120.00300 * 0.38999 * 20 19 18 22 22 C 1.38236 * 119.99809 * 359.86292 * 21 20 19 23 23 C 1.38235 * 119.99821 * 359.95068 * 22 21 20 24 24 C 1.46836 * 111.56241 * 65.38903 * 16 15 6 25 25 C 1.53303 * 109.39883 * 294.61124 * 24 16 15 26 26 C 1.51436 * 108.23970 * 53.79723 * 25 24 16 27 27 O 1.20763 * 121.11169 * 130.94907 * 26 25 24 28 28 H 1.08998 * 109.47193 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47334 * 299.99943 * 1 2 3 30 30 H 1.09004 * 109.47049 * 59.99937 * 1 2 3 31 31 H 1.09004 * 109.47334 * 240.00057 * 2 1 3 32 32 H 1.09000 * 109.47295 * 119.99616 * 2 1 3 33 33 H 0.96998 * 119.99653 * 180.02562 * 10 9 7 34 34 H 1.08996 * 109.47845 * 66.49851 * 15 6 4 35 35 H 1.08998 * 109.48171 * 306.45954 * 15 6 4 36 36 H 1.09001 * 109.46739 * 50.00284 * 17 16 15 37 37 H 1.09000 * 109.47767 * 290.00543 * 17 16 15 38 38 H 1.07997 * 120.00153 * 359.97438 * 19 18 17 39 39 H 1.08004 * 120.00269 * 180.22984 * 20 19 18 40 40 H 1.08001 * 119.99997 * 179.83493 * 21 20 19 41 41 H 1.07991 * 120.00122 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.00272 * 180.02562 * 23 22 21 43 43 H 1.08996 * 109.48222 * 54.59178 * 24 16 15 44 44 H 1.09003 * 109.47697 * 174.63782 * 24 16 15 45 45 H 1.08999 * 109.70780 * 294.10829 * 25 24 16 46 46 H 1.08997 * 109.70973 * 173.48441 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9374 -0.0012 7 6 3.4473 3.6826 -1.2225 8 1 4.1649 4.0674 -1.9321 9 6 2.0983 3.8731 -1.4341 10 7 1.2246 3.4049 -0.5698 11 14 1.5116 4.7961 -2.9484 12 1 1.9695 4.0857 -4.1695 13 1 0.0282 4.8641 -2.9429 14 1 2.0708 6.1718 -2.9371 15 6 5.4519 2.8636 -0.0010 16 7 6.0053 4.2147 0.1546 17 6 7.4569 4.2181 -0.0707 18 6 7.9501 5.6402 -0.1466 19 6 7.9978 6.2911 -1.3652 20 6 8.4465 7.5968 -1.4341 21 6 8.8551 8.2489 -0.2857 22 6 8.8123 7.5961 0.9321 23 6 8.3599 6.2918 1.0016 24 6 5.6752 4.7852 1.4667 25 6 4.1591 4.9895 1.5662 26 6 3.4815 3.6732 1.2475 27 8 2.6200 3.2251 1.9654 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.2755 3.5386 -0.7189 34 1 5.7952 2.4364 -0.9432 35 1 5.7855 2.2366 0.8257 36 1 7.6804 3.7056 -1.0064 37 1 7.9537 3.7047 0.7524 38 1 7.6821 5.7805 -2.2629 39 1 8.4803 8.1067 -2.3856 40 1 9.2082 9.2681 -0.3400 41 1 9.1318 8.1054 1.8292 42 1 8.3261 5.7819 1.9531 43 1 6.0026 4.1041 2.2521 44 1 6.1797 5.7444 1.5833 45 1 3.8427 5.7486 0.8507 46 1 3.8960 5.3034 2.5763 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309655060.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:00 Heat of formation + Delta-G solvation = -91.747998 kcal Electronic energy + Delta-G solvation = -29859.258233 eV Core-core repulsion = 25906.989307 eV Total energy + Delta-G solvation = -3952.268925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.62451 -40.36921 -39.69569 -38.11160 -37.05788 -35.31838 -33.42653 -32.48686 -32.10075 -31.60716 -31.01786 -27.07685 -26.24003 -25.48560 -23.70288 -23.28030 -23.08686 -22.13207 -21.44004 -20.15948 -18.70004 -17.89916 -17.66427 -17.35640 -17.01701 -16.49451 -16.39861 -16.14468 -16.01222 -15.63085 -15.37603 -15.25307 -15.02472 -14.52339 -14.40923 -14.15054 -13.84842 -13.77435 -13.66561 -13.42124 -13.28119 -12.98167 -12.77183 -12.68035 -12.61917 -12.51847 -12.44390 -12.24878 -12.16054 -11.94988 -11.75098 -11.69671 -11.36293 -11.13367 -11.04008 -10.55405 -9.90791 -9.65585 -9.57867 -9.11095 -8.02815 -6.26663 0.54117 0.64435 1.43945 1.48755 1.55523 1.58811 1.72309 2.31242 2.46615 2.86972 3.16723 3.31205 3.58910 3.87527 4.04534 4.08359 4.14010 4.18261 4.23804 4.28911 4.30382 4.37203 4.40639 4.42454 4.44680 4.50184 4.57907 4.71949 4.80857 4.81861 4.86837 4.90392 4.98478 5.02965 5.13310 5.23217 5.23808 5.30045 5.30801 5.68007 5.74848 5.76000 5.81948 5.85853 6.03983 6.14362 6.21338 6.26659 6.73631 7.06578 7.36673 7.38925 8.90046 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015267 B = 0.004193 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.579070 B = 6676.320415 C = 7469.193376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.031 3.969 3 O -0.272 6.272 4 C 0.471 3.529 5 O -0.591 6.591 6 C 0.031 3.969 7 C -0.508 4.508 8 H 0.082 0.918 9 C 0.019 3.981 10 N -0.831 5.831 11 Si 0.957 3.043 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.267 1.267 15 C 0.105 3.895 16 N -0.524 5.524 17 C 0.095 3.905 18 C -0.082 4.082 19 C -0.113 4.113 20 C -0.130 4.130 21 C -0.128 4.128 22 C -0.126 4.126 23 C -0.123 4.123 24 C 0.069 3.931 25 C -0.147 4.147 26 C 0.377 3.623 27 O -0.494 6.494 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.264 0.736 34 H 0.075 0.925 35 H 0.018 0.982 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.119 0.881 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.130 0.870 43 H 0.035 0.965 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.019 6.955 1.297 13.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.045 4.045 3 O -0.182 6.182 4 C 0.318 3.682 5 O -0.487 6.487 6 C 0.028 3.972 7 C -0.545 4.545 8 H 0.100 0.900 9 C -0.188 4.188 10 N -0.465 5.465 11 Si 0.782 3.218 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.191 1.191 15 C -0.023 4.023 16 N -0.248 5.248 17 C -0.031 4.031 18 C -0.083 4.083 19 C -0.131 4.131 20 C -0.148 4.148 21 C -0.146 4.146 22 C -0.144 4.144 23 C -0.142 4.142 24 C -0.059 4.059 25 C -0.185 4.185 26 C 0.254 3.746 27 O -0.370 6.370 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.037 0.963 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.137 0.863 39 H 0.152 0.848 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.147 0.853 43 H 0.053 0.947 44 H 0.125 0.875 45 H 0.118 0.882 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.281 6.693 1.388 12.346 hybrid contribution -0.415 -0.696 -0.370 0.891 sum 9.865 5.997 1.018 11.590 Atomic orbital electron populations 1.21555 0.91200 1.02872 1.02492 1.23128 0.97277 0.84099 0.99976 1.87522 1.22477 1.27237 1.80973 1.25248 0.81424 0.92818 0.68720 1.90422 1.61961 1.44709 1.51642 1.18947 0.93251 0.87529 0.97486 1.20673 0.92074 1.36559 1.05175 0.90007 1.25852 0.97227 0.96346 0.99399 1.70119 1.01952 1.39311 1.35075 0.85619 0.76734 0.79548 0.79874 1.20233 1.21430 1.19138 1.21626 0.91729 0.88611 1.00349 1.61544 1.11641 1.20773 1.30883 1.21057 0.86264 0.93763 1.02059 1.19750 0.98903 0.95559 0.94065 1.21194 0.98783 0.95489 0.97653 1.21396 0.99193 0.94616 0.99591 1.21447 0.99814 1.00733 0.92562 1.21390 0.99689 0.94602 0.98713 1.21253 0.99413 0.95668 0.97857 1.22107 0.93666 1.01128 0.89002 1.22170 0.96567 0.96640 1.03097 1.25333 0.79023 0.87759 0.82504 1.90255 1.27556 1.69412 1.49774 0.88363 0.92722 0.92682 0.93310 0.93531 0.92627 0.90699 0.96343 0.89747 0.93223 0.86266 0.84751 0.84143 0.84053 0.85261 0.94668 0.87478 0.88249 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.37 10.29 71.98 0.74 -3.63 16 2 C 0.03 1.33 6.19 71.98 0.45 1.78 16 3 O -0.27 -14.33 5.94 -46.55 -0.28 -14.61 16 4 C 0.47 25.21 6.15 71.24 0.44 25.65 16 5 O -0.59 -32.06 15.66 21.96 0.34 -31.71 16 6 C 0.03 1.51 0.49 -54.08 -0.03 1.48 16 7 C -0.51 -25.55 7.66 25.60 0.20 -25.35 16 8 H 0.08 4.04 7.75 -2.91 -0.02 4.02 16 9 C 0.02 0.95 5.09 84.65 0.43 1.38 16 10 N -0.83 -44.54 8.75 21.45 0.19 -44.35 16 11 Si 0.96 41.06 29.54 68.60 2.03 43.09 16 12 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 13 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 15 C 0.11 4.34 3.53 86.42 0.30 4.64 16 16 N -0.52 -17.87 4.32 -899.94 -3.88 -21.76 16 17 C 0.10 2.59 5.13 85.56 0.44 3.03 16 18 C -0.08 -2.03 4.89 -19.86 -0.10 -2.13 16 19 C -0.11 -2.75 9.70 22.27 0.22 -2.54 16 20 C -0.13 -2.70 10.05 22.27 0.22 -2.47 16 21 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 22 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 23 C -0.12 -2.61 7.83 22.27 0.17 -2.44 16 24 C 0.07 2.15 5.27 86.42 0.46 2.61 16 25 C -0.15 -5.52 6.22 30.18 0.19 -5.33 16 26 C 0.38 18.10 4.98 29.57 0.15 18.25 16 27 O -0.49 -26.95 16.02 11.53 0.18 -26.76 16 28 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 2.06 8.13 -2.39 -0.02 2.04 16 32 H 0.05 1.98 8.13 -2.39 -0.02 1.96 16 33 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 34 H 0.07 3.12 7.94 -2.39 -0.02 3.10 16 35 H 0.02 0.77 7.88 -2.39 -0.02 0.76 16 36 H 0.08 2.26 7.88 -2.39 -0.02 2.24 16 37 H 0.05 1.23 8.07 -2.39 -0.02 1.22 16 38 H 0.12 2.92 8.06 -2.91 -0.02 2.90 16 39 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.14 1.87 8.06 -2.92 -0.02 1.85 16 42 H 0.13 2.37 7.89 -2.91 -0.02 2.35 16 43 H 0.04 1.06 8.10 -2.39 -0.02 1.04 16 44 H 0.11 2.83 5.48 -2.39 -0.01 2.82 16 45 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 46 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -65.97 373.59 4.27 -61.70 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.97 Total: 23.67 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 4.72 Total: 10.74 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -3.70 Total: -66.11 kcal Atomic # 8 Polarization: -73.33 SS G_CDS: 0.25 Total: -73.08 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -65.97 4.27 -61.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309655060.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.047 kcal (2) G-P(sol) polarization free energy of solvation -65.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds