Wall clock time and date at job start Tue Mar 31 2020 04:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86796 * 119.99833 * 2 1 4 4 H 1.48504 * 109.46971 * 240.00141 * 3 2 1 5 5 H 1.48494 * 109.47503 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46994 * 120.00690 * 3 2 1 7 7 C 1.40049 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00251 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00085 * 0.02562 * 7 2 1 10 10 O 1.21695 * 119.99977 * 359.97438 * 9 7 2 11 11 N 1.34778 * 119.99866 * 180.02562 * 9 7 2 12 12 C 1.46504 * 119.99759 * 179.97438 * 11 9 7 13 13 H 1.09003 * 109.47261 * 325.00230 * 12 11 9 14 14 C 1.50701 * 109.46950 * 84.99951 * 12 11 9 15 15 C 1.38237 * 120.00105 * 39.72743 * 14 12 11 16 16 C 1.38238 * 120.00110 * 179.78958 * 15 14 12 17 17 C 1.38240 * 119.99859 * 0.45919 * 16 15 14 18 18 C 1.38231 * 119.99625 * 359.76976 * 17 16 15 19 19 C 1.38234 * 119.99908 * 219.99797 * 14 12 11 20 20 C 1.50699 * 109.46918 * 204.99773 * 12 11 9 21 21 C 1.39374 * 119.50783 * 320.00068 * 20 12 11 22 22 C 1.36095 * 120.98778 * 179.97438 * 21 20 12 23 23 C 1.40539 * 119.65444 * 0.02562 * 22 21 20 24 24 C 1.40537 * 121.29007 * 180.02562 * 23 22 21 25 25 C 1.36092 * 119.65719 * 179.97438 * 24 23 22 26 26 C 1.39379 * 120.98708 * 0.02562 * 25 24 23 27 27 C 1.36085 * 120.98673 * 0.02562 * 26 25 24 28 28 C 1.40539 * 119.65905 * 359.95877 * 27 26 25 29 29 C 1.36091 * 119.50150 * 140.00220 * 20 12 11 30 30 H 0.96998 * 119.99798 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00341 * 359.97438 * 11 9 7 32 32 H 1.07997 * 119.99807 * 359.97438 * 15 14 12 33 33 H 1.07998 * 120.00059 * 180.25070 * 16 15 14 34 34 H 1.07991 * 119.99964 * 179.79554 * 17 16 15 35 35 H 1.07998 * 119.99788 * 179.97438 * 18 17 16 36 36 H 1.07998 * 120.00318 * 359.97438 * 19 14 12 37 37 H 1.07997 * 119.50209 * 0.25318 * 21 20 12 38 38 H 1.07998 * 120.16716 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.17045 * 359.96802 * 24 23 22 40 40 H 1.07997 * 119.50912 * 180.02562 * 25 24 23 41 41 H 1.07996 * 119.50343 * 179.97438 * 26 25 24 42 42 H 1.08007 * 120.17226 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.17639 * 0.04713 * 29 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6964 -1.2126 5 1 1.2758 2.7464 0.0006 6 1 3.0946 1.6963 1.2124 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0017 10 8 0.0581 -2.4805 -0.0017 11 7 1.9490 -3.6477 -0.0017 12 6 1.2165 -4.9165 -0.0022 13 1 0.3055 -4.8103 0.5868 14 6 0.8586 -5.2892 -1.4179 15 6 1.7656 -5.0761 -2.4391 16 6 1.4390 -5.4220 -3.7370 17 6 0.2018 -5.9723 -4.0152 18 6 -0.7070 -6.1811 -2.9947 19 6 -0.3788 -5.8391 -1.6961 20 6 2.0803 -5.9955 0.5983 21 6 3.4404 -6.0333 0.2965 22 6 4.2484 -6.9939 0.8224 23 6 3.7062 -7.9642 1.6825 24 6 4.5089 -8.9712 2.2452 25 6 3.9492 -9.8938 3.0744 26 6 2.5888 -9.8566 3.3752 27 6 1.7807 -8.8969 2.8481 28 6 2.3228 -7.9268 1.9878 29 6 1.5205 -6.9184 1.4271 30 1 -0.4850 0.8400 0.0004 31 1 2.9190 -3.6477 -0.0013 32 1 2.7305 -4.6421 -2.2225 33 1 2.1492 -5.2592 -4.5342 34 1 -0.0546 -6.2395 -5.0296 35 1 -1.6737 -6.6106 -3.2120 36 1 -1.0889 -6.0020 -0.8989 37 1 3.8603 -5.2864 -0.3609 38 1 5.3005 -7.0110 0.5793 39 1 5.5646 -9.0127 2.0206 40 1 4.5684 -10.6664 3.5058 41 1 2.1696 -10.6010 4.0359 42 1 0.7281 -8.8807 3.0898 43 1 0.4648 -6.8772 1.6513 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390834261.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:57 Heat of formation + Delta-G solvation = 28.834102 kcal Electronic energy + Delta-G solvation = -26904.556271 eV Core-core repulsion = 23264.825097 eV Total energy + Delta-G solvation = -3639.731173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.131 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.49342 -39.11042 -37.35758 -36.40217 -33.83662 -32.68778 -32.35108 -30.71205 -30.31794 -29.92927 -29.23353 -26.65681 -24.97407 -23.45343 -22.31988 -22.19396 -21.78862 -20.82602 -19.40291 -17.55259 -17.33250 -16.89318 -16.37256 -15.84067 -15.26134 -14.97753 -14.92985 -14.68421 -14.35631 -13.91604 -13.71137 -13.42793 -13.31004 -13.20851 -13.13909 -12.89980 -12.64605 -12.27749 -12.15760 -11.88449 -11.45147 -11.30500 -11.25266 -11.01559 -10.94120 -10.74245 -10.58878 -10.56682 -10.45671 -10.25460 -9.91327 -8.86341 -8.55640 -8.48399 -8.27602 -7.83725 -7.63217 -7.60227 -6.19240 -4.65261 0.57034 1.03612 1.78801 1.83798 2.10983 3.02043 3.15357 3.20391 3.22008 4.07746 4.15028 4.21059 4.55964 4.58303 4.71312 4.81524 4.89720 5.04180 5.11740 5.24468 5.27725 5.31078 5.36640 5.41020 5.42693 5.49481 5.52412 5.77018 5.83284 5.92213 5.97287 5.99300 6.08366 6.14015 6.25087 6.29884 6.39350 6.42602 6.46195 6.60418 6.75274 6.85260 6.86704 6.88254 7.04360 7.09873 7.41879 7.42293 7.86034 8.03298 8.29603 9.01523 9.48169 10.58719 10.76964 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.003730 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.468865 B = 7504.788449 C = 9003.762942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.558 3.442 10 O -0.574 6.574 11 N -0.756 5.756 12 C 0.227 3.773 13 H 0.094 0.906 14 C -0.068 4.068 15 C -0.095 4.095 16 C -0.126 4.126 17 C -0.130 4.130 18 C -0.125 4.125 19 C -0.106 4.106 20 C -0.063 4.063 21 C -0.097 4.097 22 C -0.109 4.109 23 C -0.055 4.055 24 C -0.105 4.105 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.103 4.103 28 C -0.047 4.047 29 C -0.100 4.100 30 H 0.269 0.731 31 H 0.380 0.620 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.731 -17.662 0.626 18.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.362 3.638 10 O -0.456 6.456 11 N -0.411 5.411 12 C 0.121 3.879 13 H 0.112 0.888 14 C -0.070 4.070 15 C -0.114 4.114 16 C -0.144 4.144 17 C -0.149 4.149 18 C -0.143 4.143 19 C -0.124 4.124 20 C -0.063 4.063 21 C -0.115 4.115 22 C -0.127 4.127 23 C -0.055 4.055 24 C -0.123 4.123 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.121 4.121 28 C -0.047 4.047 29 C -0.119 4.119 30 H 0.079 0.921 31 H 0.213 0.787 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.637 -17.512 0.641 18.408 hybrid contribution 0.901 0.904 -0.077 1.278 sum 6.537 -16.608 0.564 17.857 Atomic orbital electron populations 1.70006 1.07010 1.27355 1.35110 1.25680 0.94606 1.00201 0.92635 0.86453 0.79847 0.81139 0.79432 1.19300 1.20571 1.19286 1.20810 0.93496 0.89296 1.54541 0.91539 1.18208 0.87265 0.82181 0.76166 1.90608 1.13962 1.86506 1.54533 1.46329 1.08382 1.03911 1.82498 1.18347 0.95151 0.83253 0.91185 0.88834 1.20306 0.93979 0.96681 0.96050 1.20893 0.99574 0.98527 0.92380 1.21049 0.96918 0.99916 0.96497 1.21004 0.94393 1.00835 0.98628 1.21009 0.99117 1.01082 0.93053 1.20962 0.96012 0.98773 0.96675 1.19776 0.94231 0.96116 0.96218 1.20730 0.93176 0.98271 0.99337 1.20955 0.99643 0.94759 0.97378 1.18087 0.92956 0.96269 0.98155 1.21003 0.99320 0.94574 0.97428 1.20789 0.95246 0.99245 0.98940 1.20792 0.93924 0.98967 1.00460 1.21042 0.99873 0.94457 0.96750 1.18051 0.92923 0.95932 0.97758 1.20872 0.99669 0.94220 0.97111 0.92063 0.78725 0.86453 0.86653 0.86810 0.86628 0.86446 0.85756 0.85601 0.85837 0.86338 0.86277 0.85656 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.87 11.83 55.55 0.66 -22.22 16 2 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.09 29.56 -169.99 -5.02 15.07 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.54 -15.17 9.54 -35.63 -0.34 -15.51 16 8 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 9 C 0.56 15.48 7.70 -12.99 -0.10 15.38 16 10 O -0.57 -18.18 14.68 5.19 0.08 -18.11 16 11 N -0.76 -16.39 4.25 -57.48 -0.24 -16.63 16 12 C 0.23 4.34 2.35 -70.23 -0.17 4.17 16 13 H 0.09 1.99 7.25 -51.93 -0.38 1.62 16 14 C -0.07 -1.27 4.90 -104.62 -0.51 -1.78 16 15 C -0.10 -1.67 9.11 -39.58 -0.36 -2.03 16 16 C -0.13 -1.97 10.05 -39.58 -0.40 -2.36 16 17 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 18 C -0.12 -1.93 10.05 -39.58 -0.40 -2.33 16 19 C -0.11 -1.84 9.67 -39.58 -0.38 -2.22 16 20 C -0.06 -1.00 4.91 -104.97 -0.52 -1.51 16 21 C -0.10 -1.37 8.74 -39.93 -0.35 -1.72 16 22 C -0.11 -1.38 9.77 -39.48 -0.39 -1.76 16 23 C -0.05 -0.71 5.74 -106.83 -0.61 -1.32 16 24 C -0.11 -1.14 9.77 -39.49 -0.39 -1.52 16 25 C -0.12 -1.22 9.95 -39.93 -0.40 -1.62 16 26 C -0.12 -1.25 9.95 -39.93 -0.40 -1.64 16 27 C -0.10 -1.19 9.77 -39.49 -0.39 -1.58 16 28 C -0.05 -0.63 5.74 -106.83 -0.61 -1.25 16 29 C -0.10 -1.47 9.35 -39.49 -0.37 -1.84 16 30 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 31 H 0.38 7.28 6.80 -40.82 -0.28 7.00 16 32 H 0.12 1.94 7.22 -52.49 -0.38 1.57 16 33 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 36 H 0.12 1.89 8.04 -52.49 -0.42 1.47 16 37 H 0.12 1.65 6.37 -52.49 -0.33 1.31 16 38 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 43 H 0.13 1.70 8.00 -52.49 -0.42 1.28 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -34.79 368.51 -11.68 -46.48 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -5.14 Total: 12.27 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -7.56 Total: -22.42 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.41 Total: -38.85 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.08 Total: -18.11 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.79 -11.68 -46.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390834261.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.309 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds