Wall clock time and date at job start Tue Mar 31 2020 04:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86798 * 120.00156 * 2 1 4 4 H 1.48507 * 109.47192 * 269.99873 * 3 2 1 5 5 H 1.48498 * 109.47304 * 29.99482 * 3 2 1 6 6 H 1.48501 * 109.47772 * 149.99742 * 3 2 1 7 7 C 1.40053 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00215 * 180.02562 * 7 2 1 9 9 C 1.46373 * 119.99752 * 0.02562 * 7 2 1 10 10 O 1.21684 * 120.00317 * 0.02562 * 9 7 2 11 11 N 1.34785 * 119.99804 * 179.97438 * 9 7 2 12 12 C 1.46495 * 119.99898 * 180.02562 * 11 9 7 13 13 H 1.09006 * 109.47293 * 34.99739 * 12 11 9 14 14 C 1.50706 * 109.46812 * 275.00257 * 12 11 9 15 15 C 1.38234 * 119.99765 * 319.72432 * 14 12 11 16 16 C 1.38237 * 119.99700 * 179.79363 * 15 14 12 17 17 C 1.38235 * 120.00038 * 0.46165 * 16 15 14 18 18 C 1.38238 * 120.00051 * 359.77058 * 17 16 15 19 19 C 1.38231 * 119.99678 * 0.02562 * 18 17 16 20 20 C 1.50697 * 109.47278 * 154.99936 * 12 11 9 21 21 C 1.39375 * 119.50077 * 40.00266 * 20 12 11 22 22 C 1.36092 * 120.98521 * 180.02562 * 21 20 12 23 23 C 1.40535 * 119.65522 * 359.97182 * 22 21 20 24 24 C 1.40547 * 121.28256 * 180.02562 * 23 22 21 25 25 C 1.36083 * 119.65225 * 179.97438 * 24 23 22 26 26 C 1.39379 * 120.99349 * 0.02562 * 25 24 23 27 27 C 1.36095 * 120.98758 * 0.02562 * 26 25 24 28 28 C 1.40545 * 119.65358 * 359.97438 * 27 26 25 29 29 C 1.36093 * 119.50531 * 219.97362 * 20 12 11 30 30 H 0.97003 * 120.00322 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99571 * 359.97438 * 11 9 7 32 32 H 1.07995 * 120.00366 * 0.02562 * 15 14 12 33 33 H 1.07996 * 120.00286 * 180.24985 * 16 15 14 34 34 H 1.08003 * 120.00363 * 179.79288 * 17 16 15 35 35 H 1.08005 * 120.00432 * 180.02562 * 18 17 16 36 36 H 1.08004 * 120.00032 * 179.97438 * 19 18 17 37 37 H 1.07996 * 119.51054 * 359.97438 * 21 20 12 38 38 H 1.08000 * 120.17538 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.17184 * 359.96072 * 24 23 22 40 40 H 1.08006 * 119.50646 * 180.02562 * 25 24 23 41 41 H 1.07996 * 119.50869 * 179.97438 * 26 25 24 42 42 H 1.07998 * 120.16921 * 180.26869 * 27 26 25 43 43 H 1.07992 * 120.17525 * 0.02685 * 29 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4381 2.6527 0.6999 6 1 3.5382 1.4403 0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0582 -2.4805 -0.0004 11 7 1.9490 -3.6478 0.0005 12 6 1.2165 -4.9164 0.0000 13 1 0.3059 -4.8101 -0.5898 14 6 0.8575 -5.2898 1.4152 15 6 1.7680 -5.0875 2.4355 16 6 1.4371 -5.4260 3.7343 17 6 0.1993 -5.9756 4.0114 18 6 -0.7094 -6.1823 2.9903 19 6 -0.3800 -5.8399 1.6922 20 6 2.0807 -5.9952 -0.6004 21 6 3.4406 -6.0331 -0.2975 22 6 4.2489 -6.9935 -0.8232 23 6 3.7075 -7.9633 -1.6841 24 6 4.5107 -8.9707 -2.2457 25 6 3.9515 -9.8936 -3.0749 26 6 2.5915 -9.8558 -3.3778 27 6 1.7833 -8.8945 -2.8534 28 6 2.3249 -7.9242 -1.9928 29 6 1.5214 -6.9181 -1.4296 30 1 -0.4851 0.8400 -0.0004 31 1 2.9189 -3.6477 0.0002 32 1 2.7364 -4.6616 2.2185 33 1 2.1469 -5.2643 4.5320 34 1 -0.0580 -6.2432 5.0256 35 1 -1.6766 -6.6113 3.2068 36 1 -1.0898 -6.0018 0.8944 37 1 3.8593 -5.2887 0.3635 38 1 5.3011 -7.0103 -0.5800 39 1 5.5661 -9.0121 -2.0205 40 1 4.5708 -10.6670 -3.5048 41 1 2.1730 -10.5999 -4.0391 42 1 0.7305 -8.8803 -3.0936 43 1 0.4661 -6.8763 -1.6553 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390834262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:00 Heat of formation + Delta-G solvation = 9.948719 kcal Electronic energy + Delta-G solvation = -26905.482720 eV Core-core repulsion = 23264.932614 eV Total energy + Delta-G solvation = -3640.550105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.57722 -40.39504 -39.04482 -37.72016 -35.37702 -34.49764 -33.66484 -32.20483 -31.70091 -30.97536 -30.22596 -28.57553 -26.48543 -24.48260 -23.40616 -23.38582 -22.80815 -22.39502 -21.10554 -19.42305 -18.33456 -17.91242 -17.64128 -17.57408 -16.80590 -16.35195 -16.26627 -15.84062 -15.59501 -15.38738 -14.91000 -14.78227 -14.55064 -14.36877 -14.27552 -14.19647 -13.99809 -13.77941 -13.60936 -13.30161 -13.04936 -12.77789 -12.63959 -12.54031 -12.33145 -12.08508 -11.95966 -11.86412 -11.79242 -11.69423 -10.93932 -10.88296 -9.95238 -9.79096 -9.65900 -9.49068 -9.40163 -8.79435 -8.28470 -6.85289 -0.38308 0.04814 0.50683 0.54341 1.13945 1.39056 1.40669 1.55539 2.05291 2.24122 2.48468 2.87832 3.06774 3.19800 3.62321 3.67952 3.75098 3.94760 4.01646 4.05478 4.09948 4.17087 4.22041 4.29308 4.32782 4.43054 4.46769 4.51405 4.61992 4.71071 4.78208 4.87701 5.02049 5.11299 5.16157 5.19383 5.31019 5.31717 5.33096 5.54352 5.58720 5.61208 5.63655 5.67867 5.71696 5.88578 5.91718 6.11345 6.15213 6.20177 6.27762 6.87113 7.52574 8.50198 8.68140 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.010633 B = 0.003730 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.736333 B = 7504.547790 C = 9003.472866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.030 3.970 3 Si 0.995 3.005 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.248 1.248 7 C -0.572 4.572 8 H 0.086 0.914 9 C 0.544 3.456 10 O -0.625 6.625 11 N -0.742 5.742 12 C 0.235 3.765 13 H 0.055 0.945 14 C -0.091 4.091 15 C -0.115 4.115 16 C -0.129 4.129 17 C -0.129 4.129 18 C -0.126 4.126 19 C -0.132 4.132 20 C -0.078 4.078 21 C -0.116 4.116 22 C -0.098 4.098 23 C -0.072 4.072 24 C -0.110 4.110 25 C -0.121 4.121 26 C -0.116 4.116 27 C -0.124 4.124 28 C -0.064 4.064 29 C -0.112 4.112 30 H 0.273 0.727 31 H 0.392 0.608 32 H 0.119 0.881 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.114 0.886 37 H 0.127 0.873 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.135 0.865 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.548 -19.205 -0.235 21.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.185 4.185 3 Si 0.815 3.185 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.171 1.171 7 C -0.609 4.609 8 H 0.104 0.896 9 C 0.349 3.651 10 O -0.511 6.511 11 N -0.396 5.396 12 C 0.129 3.871 13 H 0.073 0.927 14 C -0.092 4.092 15 C -0.133 4.133 16 C -0.146 4.146 17 C -0.147 4.147 18 C -0.144 4.144 19 C -0.151 4.151 20 C -0.079 4.079 21 C -0.135 4.135 22 C -0.115 4.115 23 C -0.072 4.072 24 C -0.128 4.128 25 C -0.139 4.139 26 C -0.134 4.134 27 C -0.141 4.141 28 C -0.064 4.064 29 C -0.131 4.131 30 H 0.083 0.917 31 H 0.227 0.773 32 H 0.137 0.863 33 H 0.162 0.838 34 H 0.168 0.832 35 H 0.161 0.839 36 H 0.132 0.868 37 H 0.145 0.855 38 H 0.175 0.825 39 H 0.169 0.831 40 H 0.170 0.830 41 H 0.166 0.834 42 H 0.153 0.847 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.504 -19.113 -0.248 20.921 hybrid contribution 0.014 1.153 -0.122 1.159 sum 8.518 -17.961 -0.370 19.882 Atomic orbital electron populations 1.70188 1.09477 1.28803 1.36516 1.26929 0.95490 1.04816 0.91249 0.85056 0.78849 0.75243 0.79380 1.18684 1.19879 1.17136 1.21392 0.94646 0.90017 1.54834 0.89579 1.18541 0.86855 0.83978 0.75750 1.90556 1.16092 1.87683 1.56805 1.45917 1.08899 1.03749 1.80997 1.18230 0.93990 0.83017 0.91890 0.92690 1.20329 0.95007 0.98081 0.95811 1.21042 0.99552 0.99528 0.93207 1.21439 0.97938 0.98993 0.96274 1.21459 0.93685 0.99475 1.00110 1.21379 1.00529 1.00318 0.92200 1.21163 0.95929 0.99976 0.98039 1.19541 0.94825 0.95894 0.97600 1.20741 0.92506 0.99598 1.00609 1.21281 1.00799 0.93447 0.96016 1.18425 0.93001 0.97226 0.98581 1.21340 1.00493 0.93816 0.97127 1.21246 0.95414 0.99359 0.97848 1.21216 0.94156 0.98414 0.99580 1.21258 1.00913 0.94777 0.97192 1.18258 0.93541 0.96199 0.98419 1.20948 0.99895 0.94891 0.97331 0.91686 0.77261 0.86346 0.83788 0.83188 0.83868 0.86802 0.85477 0.82504 0.83105 0.83026 0.83414 0.84731 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.95 11.83 21.84 0.26 -50.69 16 2 C 0.03 1.71 5.50 85.31 0.47 2.18 16 3 Si 1.00 41.50 29.56 68.60 2.03 43.53 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 7 C -0.57 -32.81 9.54 24.83 0.24 -32.58 16 8 H 0.09 4.42 7.85 -2.91 -0.02 4.40 16 9 C 0.54 32.00 7.70 86.36 0.67 32.67 16 10 O -0.62 -42.41 14.68 -4.30 -0.06 -42.48 16 11 N -0.74 -34.28 4.27 -453.99 -1.94 -36.22 16 12 C 0.23 9.78 2.35 43.50 0.10 9.89 16 13 H 0.05 2.65 7.25 -2.38 -0.02 2.64 16 14 C -0.09 -3.59 4.90 -19.86 -0.10 -3.69 16 15 C -0.12 -4.14 9.09 22.27 0.20 -3.94 16 16 C -0.13 -3.91 10.05 22.27 0.22 -3.69 16 17 C -0.13 -3.65 10.05 22.27 0.22 -3.43 16 18 C -0.13 -3.90 10.05 22.27 0.22 -3.68 16 19 C -0.13 -4.92 9.67 22.27 0.22 -4.70 16 20 C -0.08 -2.66 4.91 -20.09 -0.10 -2.76 16 21 C -0.12 -3.39 8.71 22.04 0.19 -3.20 16 22 C -0.10 -2.36 9.77 22.33 0.22 -2.15 16 23 C -0.07 -1.80 5.74 -21.30 -0.12 -1.92 16 24 C -0.11 -2.04 9.77 22.33 0.22 -1.82 16 25 C -0.12 -1.94 9.95 22.04 0.22 -1.72 16 26 C -0.12 -2.02 9.95 22.05 0.22 -1.81 16 27 C -0.12 -2.77 9.77 22.33 0.22 -2.55 16 28 C -0.06 -1.77 5.74 -21.30 -0.12 -1.89 16 29 C -0.11 -3.55 9.36 22.33 0.21 -3.34 16 30 H 0.27 15.41 8.29 -92.71 -0.77 14.64 16 31 H 0.39 15.84 6.80 -92.71 -0.63 15.21 16 32 H 0.12 4.06 7.19 -2.91 -0.02 4.04 16 33 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 34 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 36 H 0.11 4.10 8.04 -2.91 -0.02 4.07 16 37 H 0.13 3.48 6.33 -2.91 -0.02 3.46 16 38 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 39 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 42 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 43 H 0.12 3.78 8.00 -2.91 -0.02 3.75 16 Total: -1.00 -80.80 368.40 4.31 -76.49 By element: Atomic # 1 Polarization: 43.08 SS G_CDS: 0.41 Total: 43.49 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 3.62 Total: -34.12 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -1.68 Total: -86.91 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -0.06 Total: -42.48 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -80.80 4.31 -76.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390834262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.436 kcal (2) G-P(sol) polarization free energy of solvation -80.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds