Wall clock time and date at job start Tue Mar 31 2020 04:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99994 * 2 1 4 4 C 1.50696 * 109.47005 * 179.97438 * 3 2 1 5 5 C 1.38986 * 119.08748 * 0.21968 * 4 3 2 6 6 C 1.38284 * 119.71729 * 180.21128 * 5 4 3 7 7 O 1.35600 * 121.02953 * 179.82944 * 6 5 4 8 8 C 1.42899 * 116.99829 * 354.68879 * 7 6 5 9 9 C 1.53002 * 109.47109 * 184.71318 * 8 7 6 10 10 C 1.50693 * 115.55256 * 80.87912 * 9 8 7 11 11 H 1.07996 * 120.00166 * 219.76115 * 10 9 8 12 12 C 1.37882 * 119.99927 * 39.76446 * 10 9 8 13 13 N 1.31514 * 120.00141 * 16.85436 * 12 10 9 14 14 Si 1.86797 * 119.99944 * 196.85665 * 12 10 9 15 15 H 1.48498 * 109.47485 * 89.99944 * 14 12 10 16 16 H 1.48500 * 109.47451 * 209.99849 * 14 12 10 17 17 H 1.48498 * 109.47284 * 329.99911 * 14 12 10 18 18 C 1.53000 * 117.49593 * 295.21235 * 9 8 7 19 19 C 1.53004 * 60.03099 * 252.50164 * 18 9 8 20 20 C 1.41369 * 117.93672 * 359.55188 * 6 5 4 21 21 C 1.40242 * 121.33520 * 180.28001 * 20 6 5 22 22 C 1.36404 * 119.61123 * 179.97438 * 21 20 6 23 23 F 1.35107 * 119.61391 * 179.97438 * 22 21 20 24 24 C 1.39503 * 120.77386 * 0.02562 * 22 21 20 25 25 C 1.36088 * 121.01397 * 359.97438 * 24 22 21 26 26 C 1.40581 * 119.79487 * 0.02562 * 25 24 22 27 27 N 1.31192 * 119.08718 * 180.02562 * 4 3 2 28 28 H 1.08992 * 109.47249 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47391 * 300.00594 * 1 2 3 30 30 H 1.09009 * 109.46900 * 59.99842 * 1 2 3 31 31 H 1.08994 * 109.47400 * 59.99977 * 3 2 1 32 32 H 1.08997 * 109.46922 * 299.99660 * 3 2 1 33 33 H 1.07994 * 120.13807 * 0.02562 * 5 4 3 34 34 H 1.08996 * 109.47376 * 64.71283 * 8 7 6 35 35 H 1.09004 * 109.47315 * 304.71198 * 8 7 6 36 36 H 0.97004 * 120.00090 * 184.98999 * 13 12 10 37 37 H 1.09001 * 117.49941 * 359.97438 * 18 9 8 38 38 H 1.08992 * 117.50205 * 144.99877 * 18 9 8 39 39 H 1.08996 * 117.50555 * 107.50646 * 19 18 9 40 40 H 1.09001 * 117.49498 * 252.52551 * 19 18 9 41 41 H 1.08001 * 120.18860 * 359.95789 * 21 20 6 42 42 H 1.07996 * 119.49430 * 179.97438 * 24 22 21 43 43 H 1.07996 * 120.10170 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.0901 -0.0777 -0.0036 6 6 5.4673 -0.2020 0.0014 7 8 6.0590 -1.4222 0.0010 8 6 5.2008 -2.5593 0.1130 9 6 6.0478 -3.8295 0.2131 10 6 6.6057 -4.1328 1.5797 11 1 7.6100 -4.5170 1.6799 12 6 5.8339 -3.9197 2.7023 13 7 4.5317 -3.7760 2.5874 14 14 6.6380 -3.8350 4.3862 15 1 7.0166 -2.4303 4.6840 16 1 5.6833 -4.3190 5.4156 17 1 7.8532 -4.6883 4.3980 18 6 6.9032 -4.2054 -0.9984 19 6 5.6489 -5.0165 -0.6672 20 6 6.2393 0.9823 0.0009 21 6 7.6410 0.9391 -0.0001 22 6 8.3512 2.1037 -0.0011 23 9 9.7016 2.0623 -0.0016 24 6 7.6994 3.3372 -0.0006 25 6 6.3406 3.4122 0.0004 26 6 5.5759 2.2326 0.0015 27 7 4.2388 2.2790 0.0012 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.4660 -0.9590 -0.0076 34 1 4.5595 -2.6186 -0.7663 35 1 4.5842 -2.4625 1.0066 36 1 3.9976 -3.5543 3.3662 37 1 6.8623 -3.5480 -1.8669 38 1 7.8694 -4.6721 -0.8071 39 1 4.7830 -4.8926 -1.3176 40 1 5.7900 -6.0167 -0.2575 41 1 8.1552 -0.0107 0.0001 42 1 8.2821 4.2464 -0.0010 43 1 5.8513 4.3750 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596282028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:57 Heat of formation + Delta-G solvation = -45.192949 kcal Electronic energy + Delta-G solvation = -28272.924763 eV Core-core repulsion = 24199.214311 eV Total energy + Delta-G solvation = -4073.710452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.137 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -48.74881 -40.84498 -38.43885 -38.11784 -36.48488 -36.07693 -32.31084 -32.26664 -31.10434 -29.54861 -27.63278 -26.81468 -25.70636 -25.49858 -23.53615 -22.42649 -21.70251 -21.17188 -19.42715 -18.34951 -17.86221 -17.50557 -16.50473 -16.11277 -16.04461 -15.64236 -15.54904 -15.25599 -15.12758 -15.10275 -14.58409 -14.17147 -13.98892 -13.80198 -13.56594 -13.32367 -13.06242 -12.71895 -12.62961 -12.48031 -11.88840 -11.54704 -11.40216 -11.28638 -11.09998 -11.05833 -10.86100 -10.65655 -10.51975 -10.33256 -9.81046 -9.63818 -9.47785 -9.40749 -9.10661 -8.84293 -8.54175 -8.19390 -7.62554 -6.24410 -4.21884 0.54793 0.83714 2.13835 2.87846 3.23537 3.31682 3.34310 3.41287 3.55235 4.14845 4.29825 4.30746 4.48891 4.73551 4.78965 4.85321 5.03506 5.04189 5.13250 5.23634 5.31173 5.33834 5.42353 5.48024 5.62278 5.64534 5.78057 5.83809 5.91115 5.99332 6.10140 6.16202 6.19184 6.27191 6.35521 6.49267 6.59308 6.64105 6.70986 6.88512 6.90513 7.08863 7.21586 7.27871 7.75667 7.91454 8.07730 8.23314 8.73313 9.37751 10.81546 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.007581 B = 0.005310 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3692.387617 B = 5271.495436 C = 7276.010617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.114 3.886 4 C 0.197 3.803 5 C -0.261 4.261 6 C 0.212 3.788 7 O -0.286 6.286 8 C 0.083 3.917 9 C 0.047 3.953 10 C -0.484 4.484 11 H 0.065 0.935 12 C 0.070 3.930 13 N -0.876 5.876 14 Si 0.888 3.112 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.271 1.271 18 C -0.200 4.200 19 C -0.186 4.186 20 C -0.111 4.111 21 C -0.094 4.094 22 C 0.071 3.929 23 F -0.142 7.142 24 C -0.121 4.121 25 C -0.080 4.080 26 C 0.158 3.842 27 N -0.514 5.514 28 H 0.090 0.910 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.157 0.843 34 H 0.035 0.965 35 H 0.120 0.880 36 H 0.265 0.735 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.150 0.850 42 H 0.139 0.861 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.015 12.427 -5.859 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C 0.037 3.963 4 C 0.049 3.951 5 C -0.283 4.283 6 C 0.155 3.845 7 O -0.194 6.194 8 C 0.009 3.991 9 C 0.047 3.953 10 C -0.520 4.520 11 H 0.083 0.917 12 C -0.133 4.133 13 N -0.513 5.513 14 Si 0.715 3.285 15 H -0.203 1.203 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.237 4.237 19 C -0.224 4.224 20 C -0.114 4.114 21 C -0.114 4.114 22 C 0.051 3.949 23 F -0.120 7.120 24 C -0.142 4.142 25 C -0.099 4.099 26 C 0.036 3.964 27 N -0.229 5.229 28 H 0.108 0.892 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.174 0.826 34 H 0.053 0.947 35 H 0.137 0.863 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.167 0.833 42 H 0.157 0.843 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.137 12.922 -5.741 14.733 hybrid contribution 0.553 -0.706 0.888 1.262 sum -3.584 12.216 -4.853 13.624 Atomic orbital electron populations 1.22762 0.80400 1.03216 0.99881 1.87923 1.19979 1.26607 1.95484 1.20968 0.88274 0.85261 1.01840 1.20618 0.94915 0.88310 0.91304 1.21930 0.93900 1.00534 1.11925 1.19394 0.90971 0.86246 0.87891 1.86042 1.38293 1.11652 1.83447 1.23048 0.92279 0.81469 1.02267 1.18809 0.96389 0.89183 0.90925 1.20522 0.99529 1.43545 0.88447 0.91667 1.24933 0.94395 0.94674 0.99270 1.69894 1.04086 1.46393 1.30961 0.86643 0.79565 0.78729 0.83597 1.20339 1.21115 1.19580 1.22824 0.95186 1.04872 1.00813 1.22993 0.96692 0.97920 1.04806 1.18055 0.93483 0.91994 1.07844 1.20975 0.93079 0.98671 0.98660 1.17240 0.77035 0.94218 1.06360 1.91494 1.28911 1.97361 1.94257 1.20828 0.95023 0.96760 1.01577 1.20484 0.92020 0.97302 1.00080 1.18522 0.89294 0.91398 0.97224 1.67513 1.05167 1.30812 1.19456 0.89163 0.93897 0.94044 0.90745 0.90821 0.82577 0.94657 0.86283 0.92534 0.91089 0.90216 0.91450 0.89683 0.83257 0.84333 0.83828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.37 9.10 -35.23 -0.32 -5.69 16 3 C 0.11 1.48 6.46 36.00 0.23 1.71 16 4 C 0.20 3.25 6.78 -82.59 -0.56 2.69 16 5 C -0.26 -4.87 8.39 -39.29 -0.33 -5.20 16 6 C 0.21 4.21 6.73 -38.37 -0.26 3.95 16 7 O -0.29 -6.29 9.42 -18.50 -0.17 -6.47 16 8 C 0.08 1.89 4.46 37.16 0.17 2.06 16 9 C 0.05 1.15 1.93 -155.62 -0.30 0.85 16 10 C -0.48 -12.87 8.98 -34.44 -0.31 -13.17 16 11 H 0.07 1.74 7.87 -52.49 -0.41 1.33 16 12 C 0.07 1.85 5.12 -17.82 -0.09 1.76 16 13 N -0.88 -23.54 11.10 55.43 0.62 -22.92 16 14 Si 0.89 20.78 29.57 -169.99 -5.03 15.76 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 C -0.20 -4.25 9.92 -26.73 -0.27 -4.51 16 19 C -0.19 -4.06 9.89 -26.69 -0.26 -4.33 16 20 C -0.11 -2.00 5.75 -106.69 -0.61 -2.61 16 21 C -0.09 -1.59 9.54 -39.49 -0.38 -1.97 16 22 C 0.07 1.05 7.24 -39.77 -0.29 0.76 16 23 F -0.14 -2.11 17.25 2.25 0.04 -2.07 16 24 C -0.12 -1.50 9.92 -39.88 -0.40 -1.90 16 25 C -0.08 -1.05 9.98 -39.47 -0.39 -1.44 16 26 C 0.16 2.59 6.60 -84.87 -0.56 2.03 16 27 N -0.51 -8.42 10.22 -7.30 -0.07 -8.50 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.16 3.01 5.34 -52.49 -0.28 2.73 16 34 H 0.04 0.75 7.56 -51.93 -0.39 0.36 16 35 H 0.12 2.99 5.01 -51.93 -0.26 2.73 16 36 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 39 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 40 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 41 H 0.15 2.60 7.67 -52.49 -0.40 2.19 16 42 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -28.62 367.77 -8.43 -37.04 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.53 Total: 5.18 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -3.50 Total: -17.88 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.54 Total: -31.42 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.49 Total: -12.15 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.62 -8.43 -37.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596282028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.149 kcal (2) G-P(sol) polarization free energy of solvation -28.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds