Wall clock time and date at job start Tue Mar 31 2020 04:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99994 * 2 1 4 4 C 1.50696 * 109.47005 * 179.97438 * 3 2 1 5 5 C 1.38986 * 119.08748 * 0.21968 * 4 3 2 6 6 C 1.38284 * 119.71729 * 180.21128 * 5 4 3 7 7 O 1.35600 * 121.02953 * 179.82944 * 6 5 4 8 8 C 1.42899 * 116.99829 * 354.68879 * 7 6 5 9 9 C 1.53002 * 109.47109 * 184.71318 * 8 7 6 10 10 C 1.50693 * 115.55256 * 80.87912 * 9 8 7 11 11 H 1.07996 * 120.00166 * 219.76115 * 10 9 8 12 12 C 1.37882 * 119.99927 * 39.76446 * 10 9 8 13 13 N 1.31514 * 120.00141 * 16.85436 * 12 10 9 14 14 Si 1.86797 * 119.99944 * 196.85665 * 12 10 9 15 15 H 1.48498 * 109.47485 * 89.99944 * 14 12 10 16 16 H 1.48500 * 109.47451 * 209.99849 * 14 12 10 17 17 H 1.48498 * 109.47284 * 329.99911 * 14 12 10 18 18 C 1.53000 * 117.49593 * 295.21235 * 9 8 7 19 19 C 1.53004 * 60.03099 * 252.50164 * 18 9 8 20 20 C 1.41369 * 117.93672 * 359.55188 * 6 5 4 21 21 C 1.40242 * 121.33520 * 180.28001 * 20 6 5 22 22 C 1.36404 * 119.61123 * 179.97438 * 21 20 6 23 23 F 1.35107 * 119.61391 * 179.97438 * 22 21 20 24 24 C 1.39503 * 120.77386 * 0.02562 * 22 21 20 25 25 C 1.36088 * 121.01397 * 359.97438 * 24 22 21 26 26 C 1.40581 * 119.79487 * 0.02562 * 25 24 22 27 27 N 1.31192 * 119.08718 * 180.02562 * 4 3 2 28 28 H 1.08992 * 109.47249 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47391 * 300.00594 * 1 2 3 30 30 H 1.09009 * 109.46900 * 59.99842 * 1 2 3 31 31 H 1.08994 * 109.47400 * 59.99977 * 3 2 1 32 32 H 1.08997 * 109.46922 * 299.99660 * 3 2 1 33 33 H 1.07994 * 120.13807 * 0.02562 * 5 4 3 34 34 H 1.08996 * 109.47376 * 64.71283 * 8 7 6 35 35 H 1.09004 * 109.47315 * 304.71198 * 8 7 6 36 36 H 0.97004 * 120.00090 * 184.98999 * 13 12 10 37 37 H 1.09001 * 117.49941 * 359.97438 * 18 9 8 38 38 H 1.08992 * 117.50205 * 144.99877 * 18 9 8 39 39 H 1.08996 * 117.50555 * 107.50646 * 19 18 9 40 40 H 1.09001 * 117.49498 * 252.52551 * 19 18 9 41 41 H 1.08001 * 120.18860 * 359.95789 * 21 20 6 42 42 H 1.07996 * 119.49430 * 179.97438 * 24 22 21 43 43 H 1.07996 * 120.10170 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.0901 -0.0777 -0.0036 6 6 5.4673 -0.2020 0.0014 7 8 6.0590 -1.4222 0.0010 8 6 5.2008 -2.5593 0.1130 9 6 6.0478 -3.8295 0.2131 10 6 6.6057 -4.1328 1.5797 11 1 7.6100 -4.5170 1.6799 12 6 5.8339 -3.9197 2.7023 13 7 4.5317 -3.7760 2.5874 14 14 6.6380 -3.8350 4.3862 15 1 7.0166 -2.4303 4.6840 16 1 5.6833 -4.3190 5.4156 17 1 7.8532 -4.6883 4.3980 18 6 6.9032 -4.2054 -0.9984 19 6 5.6489 -5.0165 -0.6672 20 6 6.2393 0.9823 0.0009 21 6 7.6410 0.9391 -0.0001 22 6 8.3512 2.1037 -0.0011 23 9 9.7016 2.0623 -0.0016 24 6 7.6994 3.3372 -0.0006 25 6 6.3406 3.4122 0.0004 26 6 5.5759 2.2326 0.0015 27 7 4.2388 2.2790 0.0012 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.4660 -0.9590 -0.0076 34 1 4.5595 -2.6186 -0.7663 35 1 4.5842 -2.4625 1.0066 36 1 3.9976 -3.5543 3.3662 37 1 6.8623 -3.5480 -1.8669 38 1 7.8694 -4.6721 -0.8071 39 1 4.7830 -4.8926 -1.3176 40 1 5.7900 -6.0167 -0.2575 41 1 8.1552 -0.0107 0.0001 42 1 8.2821 4.2464 -0.0010 43 1 5.8513 4.3750 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596282028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:55 Heat of formation + Delta-G solvation = -60.066981 kcal Electronic energy + Delta-G solvation = -28273.569749 eV Core-core repulsion = 24199.214311 eV Total energy + Delta-G solvation = -4074.355438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.137 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -49.96186 -42.15782 -39.99597 -39.13919 -37.95536 -37.50105 -34.30781 -33.57418 -32.26352 -30.83266 -28.70537 -28.46279 -27.50168 -26.59820 -24.83139 -23.59714 -23.21218 -22.76066 -21.24874 -19.57607 -19.21081 -18.92022 -18.20498 -17.27333 -17.19087 -16.87253 -16.76908 -16.67876 -16.59326 -16.36603 -16.21171 -15.65512 -15.43558 -15.17192 -14.86089 -14.63122 -14.44534 -14.04020 -13.74576 -13.60160 -13.57276 -13.17068 -13.00167 -12.75963 -12.44818 -12.29653 -12.26597 -12.22592 -12.21126 -12.11449 -11.46476 -11.19597 -10.74630 -10.73208 -10.69381 -10.66986 -10.10713 -9.78190 -8.96203 -8.24920 -6.27178 -0.70867 -0.40962 0.82618 1.34174 1.38748 1.45928 1.67007 2.01977 2.35529 2.42877 2.88174 2.90941 3.09120 3.38400 3.53914 3.55306 3.61891 3.77096 3.88975 4.09402 4.14732 4.18733 4.33106 4.40246 4.40897 4.47882 4.50901 4.59734 4.62243 4.63026 4.75115 4.80743 4.87986 4.91120 4.93854 5.01425 5.03743 5.09118 5.14159 5.34352 5.40014 5.48021 5.71355 5.73850 6.19030 6.26479 6.32181 6.69312 6.77501 7.33130 8.79731 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.007581 B = 0.005310 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3692.387617 B = 5271.495436 C = 7276.010617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.415 6.415 3 C 0.117 3.883 4 C 0.189 3.811 5 C -0.267 4.267 6 C 0.179 3.821 7 O -0.305 6.305 8 C 0.099 3.901 9 C 0.010 3.990 10 C -0.504 4.504 11 H 0.054 0.946 12 C 0.031 3.969 13 N -0.895 5.895 14 Si 0.939 3.061 15 H -0.282 1.282 16 H -0.279 1.279 17 H -0.266 1.266 18 C -0.181 4.181 19 C -0.178 4.178 20 C -0.125 4.125 21 C -0.125 4.125 22 C 0.083 3.917 23 F -0.141 7.141 24 C -0.106 4.106 25 C -0.066 4.066 26 C 0.141 3.859 27 N -0.503 5.503 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.142 0.858 34 H 0.042 0.958 35 H 0.093 0.907 36 H 0.265 0.735 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.130 0.870 42 H 0.184 0.816 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.158 15.251 -6.193 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.334 6.334 3 C 0.041 3.959 4 C 0.039 3.961 5 C -0.289 4.289 6 C 0.124 3.876 7 O -0.214 6.214 8 C 0.025 3.975 9 C 0.010 3.990 10 C -0.541 4.541 11 H 0.072 0.928 12 C -0.169 4.169 13 N -0.532 5.532 14 Si 0.764 3.236 15 H -0.208 1.208 16 H -0.204 1.204 17 H -0.191 1.191 18 C -0.218 4.218 19 C -0.216 4.216 20 C -0.128 4.128 21 C -0.145 4.145 22 C 0.063 3.937 23 F -0.119 7.119 24 C -0.126 4.126 25 C -0.085 4.085 26 C 0.019 3.981 27 N -0.218 5.218 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.160 0.840 34 H 0.060 0.940 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.148 0.852 42 H 0.201 0.799 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.279 15.752 -6.080 17.418 hybrid contribution 0.634 -1.479 0.953 1.871 sum -3.645 14.272 -5.127 15.597 Atomic orbital electron populations 1.22966 0.78364 1.03911 1.01568 1.87888 1.22293 1.27444 1.95787 1.21080 0.85844 0.85314 1.03691 1.21125 0.96866 0.87393 0.90676 1.21938 0.93345 1.01271 1.12318 1.19729 0.91950 0.85981 0.89978 1.85985 1.38494 1.12294 1.84645 1.22648 0.91888 0.81749 1.01217 1.18951 0.98532 0.90593 0.90932 1.20736 0.99174 1.43948 0.90200 0.92766 1.25521 0.94845 0.94658 1.01917 1.69982 1.04768 1.46948 1.31534 0.85844 0.79017 0.78281 0.80428 1.20842 1.20408 1.19064 1.22819 0.94997 1.04191 0.99840 1.22975 0.97635 0.96900 1.04068 1.18226 0.93919 0.92072 1.08563 1.20866 0.93002 0.99051 1.01540 1.17449 0.76934 0.94615 1.04677 1.91500 1.28980 1.97406 1.94064 1.21226 0.95006 0.97001 0.99366 1.20900 0.92081 0.97379 0.98109 1.19042 0.89678 0.91916 0.97449 1.67630 1.05150 1.30293 1.18718 0.89095 0.92534 0.91951 0.89060 0.88345 0.84024 0.94018 0.88895 0.92590 0.89590 0.89924 0.89822 0.90151 0.85163 0.79913 0.80167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.75 16 2 O -0.41 -11.53 9.10 -148.98 -1.36 -12.89 16 3 C 0.12 2.89 6.46 71.23 0.46 3.35 16 4 C 0.19 6.16 6.78 42.83 0.29 6.45 16 5 C -0.27 -10.35 8.39 22.46 0.19 -10.16 16 6 C 0.18 7.46 6.73 23.05 0.16 7.62 16 7 O -0.30 -14.18 9.42 -89.10 -0.84 -15.01 16 8 C 0.10 4.74 4.46 71.98 0.32 5.06 16 9 C 0.01 0.52 1.93 -52.90 -0.10 0.42 16 10 C -0.50 -27.67 8.98 25.60 0.23 -27.44 16 11 H 0.05 3.00 7.87 -2.91 -0.02 2.97 16 12 C 0.03 1.70 5.12 84.66 0.43 2.13 16 13 N -0.89 -49.60 11.10 21.45 0.24 -49.36 16 14 Si 0.94 43.58 29.57 68.60 2.03 45.61 16 15 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 18 C -0.18 -7.77 9.92 30.60 0.30 -7.46 16 19 C -0.18 -7.83 9.89 30.62 0.30 -7.53 16 20 C -0.12 -4.59 5.75 -21.21 -0.12 -4.71 16 21 C -0.12 -4.30 9.54 22.33 0.21 -4.09 16 22 C 0.08 2.31 7.24 22.15 0.16 2.47 16 23 F -0.14 -3.96 17.25 44.97 0.78 -3.18 16 24 C -0.11 -2.20 9.92 22.07 0.22 -1.98 16 25 C -0.07 -1.49 9.98 22.34 0.22 -1.26 16 26 C 0.14 4.42 6.60 40.23 0.27 4.69 16 27 N -0.50 -15.69 10.22 -177.02 -1.81 -17.50 16 28 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.14 5.82 5.34 -2.91 -0.02 5.80 16 34 H 0.04 1.87 7.56 -2.39 -0.02 1.85 16 35 H 0.09 4.95 5.01 -2.39 -0.01 4.94 16 36 H 0.26 14.04 8.32 -92.71 -0.77 13.26 16 37 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 38 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 39 H 0.08 3.36 8.08 -2.39 -0.02 3.34 16 40 H 0.08 3.57 8.14 -2.39 -0.02 3.55 16 41 H 0.13 4.87 7.67 -2.91 -0.02 4.84 16 42 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 43 H 0.18 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -64.14 367.77 4.86 -59.27 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 1.04 Total: 23.76 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: 4.79 Total: -30.71 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -1.57 Total: -66.86 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -2.19 Total: -27.90 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.78 Total: -3.18 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -64.14 4.86 -59.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596282028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.795 kcal (2) G-P(sol) polarization free energy of solvation -64.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds