Wall clock time and date at job start Tue Mar 31 2020 05:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47168 * 283.12880 * 3 2 1 5 5 C 1.36939 * 119.99692 * 273.06985 * 4 3 2 6 6 H 1.08007 * 119.99373 * 188.90347 * 5 4 3 7 7 C 1.38814 * 120.00389 * 8.90777 * 5 4 3 8 8 N 1.31613 * 119.99800 * 24.91954 * 7 5 4 9 9 Si 1.86795 * 119.99902 * 204.92213 * 7 5 4 10 10 H 1.48503 * 109.47373 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47258 * 119.99684 * 9 7 5 12 12 H 1.48505 * 109.47065 * 239.99602 * 9 7 5 13 13 S 1.65595 * 120.00124 * 93.06787 * 4 3 2 14 14 O 1.42107 * 106.40098 * 23.54075 * 13 4 3 15 15 O 1.42097 * 106.40403 * 156.46075 * 13 4 3 16 16 C 1.76201 * 107.22261 * 270.00243 * 13 4 3 17 17 C 1.38217 * 120.00229 * 114.72205 * 16 13 4 18 18 C 1.38329 * 119.99992 * 179.72573 * 17 16 13 19 19 Cl 1.73599 * 120.00483 * 180.30063 * 18 17 16 20 20 C 1.38377 * 119.99915 * 0.57205 * 18 17 16 21 21 C 1.38175 * 120.00122 * 359.70570 * 20 18 17 22 22 C 1.38333 * 119.99815 * 295.00281 * 16 13 4 23 23 Cl 1.73602 * 120.00080 * 359.97438 * 22 16 13 24 24 H 1.09001 * 109.46791 * 163.13223 * 3 2 1 25 25 H 1.08998 * 109.47092 * 43.12781 * 3 2 1 26 26 H 0.96996 * 119.99854 * 180.02562 * 8 7 5 27 27 H 1.08000 * 119.99931 * 0.02562 * 17 16 13 28 28 H 1.08000 * 120.00120 * 179.67911 * 20 18 17 29 29 H 1.07997 * 120.00426 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.3129 1.3451 5 6 3.2644 0.6891 2.2633 6 1 3.7573 0.4840 3.2022 7 6 2.8011 1.9682 1.9875 8 7 1.8126 2.1406 1.1358 9 14 3.5806 3.4448 2.8250 10 1 4.6637 2.9853 3.7311 11 1 4.1472 4.3548 1.7974 12 1 2.5503 4.1681 3.6128 13 16 3.4456 -1.8788 1.7552 14 8 3.7136 -2.5620 0.5383 15 8 4.3717 -1.8150 2.8310 16 6 1.9711 -2.5878 2.4094 17 6 1.3469 -3.6241 1.7409 18 6 0.1925 -4.1845 2.2575 19 17 -0.5873 -5.4912 1.4220 20 6 -0.3438 -3.6997 3.4374 21 6 0.2770 -2.6600 4.1027 22 6 1.4352 -2.1035 3.5891 23 17 2.2155 -0.7975 4.4254 24 1 2.9708 0.9843 -0.2982 25 1 2.9717 -0.7492 -0.7025 26 1 1.4891 3.0344 0.9428 27 1 1.7631 -3.9995 0.8177 28 1 -1.2480 -4.1338 3.8380 29 1 -0.1418 -2.2814 5.0234 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000029488.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:47 Heat of formation + Delta-G solvation = -9.542221 kcal Electronic energy + Delta-G solvation = -22528.982427 eV Core-core repulsion = 18825.237630 eV Total energy + Delta-G solvation = -3703.744797 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 333.973 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.00363 -36.87304 -36.56747 -36.10593 -35.68536 -34.59717 -34.51465 -31.94181 -31.09915 -30.18689 -27.66292 -24.29111 -23.10645 -22.51082 -18.85218 -18.33481 -17.82967 -16.79056 -16.33229 -15.85992 -15.68449 -14.81194 -14.70794 -14.54515 -13.80888 -13.76723 -13.52035 -13.07230 -12.56614 -12.32203 -12.12735 -11.89704 -11.87790 -11.61867 -11.56438 -11.21594 -11.07039 -10.93591 -10.90431 -10.77595 -10.61681 -10.55899 -10.22189 -10.09961 -10.04142 -9.57343 -9.14765 -8.62361 -8.36195 -6.97063 -4.21249 0.94701 1.24029 1.45719 2.13666 2.50038 2.93344 3.02887 3.10176 3.44217 3.63786 3.82452 4.06318 4.38357 4.43074 4.73990 4.88316 5.01266 5.24161 5.29204 5.52209 5.70030 5.82431 5.97568 6.06908 6.16949 6.24439 6.37500 6.69530 6.76528 6.98363 7.89204 8.23940 8.68852 8.79479 10.00593 Molecular weight = 333.97amu Principal moments of inertia in cm(-1) A = 0.016086 B = 0.005770 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.255490 B = 4851.445961 C = 5097.365809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.239 3.761 3 C 0.224 3.776 4 N -0.782 5.782 5 C -0.215 4.215 6 H 0.134 0.866 7 C 0.030 3.970 8 N -0.818 5.818 9 Si 0.931 3.069 10 H -0.257 1.257 11 H -0.270 1.270 12 H -0.276 1.276 13 S 2.495 3.505 14 O -0.994 6.994 15 O -0.964 6.964 16 C -0.643 4.643 17 C -0.017 4.017 18 C -0.058 4.058 19 Cl -0.074 7.074 20 C -0.071 4.071 21 C -0.126 4.126 22 C 0.057 3.943 23 Cl -0.026 7.026 24 H 0.133 0.867 25 H 0.105 0.895 26 H 0.285 0.715 27 H 0.150 0.850 28 H 0.138 0.862 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.984 -3.626 2.332 4.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.080 4.080 3 C 0.094 3.906 4 N -0.603 5.603 5 C -0.366 4.366 6 H 0.151 0.849 7 C -0.184 4.184 8 N -0.457 5.457 9 Si 0.755 3.245 10 H -0.180 1.180 11 H -0.195 1.195 12 H -0.202 1.202 13 S 2.593 3.407 14 O -0.983 6.983 15 O -0.953 6.953 16 C -0.717 4.717 17 C -0.036 4.036 18 C -0.085 4.085 19 Cl -0.045 7.045 20 C -0.090 4.090 21 C -0.146 4.146 22 C 0.028 3.972 23 Cl 0.004 6.996 24 H 0.150 0.850 25 H 0.122 0.878 26 H 0.096 0.904 27 H 0.167 0.833 28 H 0.156 0.844 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.006 -4.330 2.144 5.232 hybrid contribution -0.582 0.583 0.737 1.106 sum -2.589 -3.747 2.881 5.389 Atomic orbital electron populations 1.80877 1.13639 1.11967 1.08743 1.29439 0.95578 0.90502 0.92455 1.19027 0.81287 1.04967 0.85284 1.55853 1.70175 1.19759 1.14536 1.20584 1.27429 0.85423 1.03156 0.84876 1.25700 0.94847 1.00370 0.97461 1.69921 1.19614 1.25131 1.31066 0.85739 0.79645 0.79568 0.79559 1.18039 1.19462 1.20163 1.13878 0.79044 0.74417 0.73390 1.93334 1.85641 1.74382 1.44968 1.93401 1.61431 1.85802 1.54675 1.32558 1.28177 1.07274 1.03720 1.20786 0.91883 0.92400 0.98575 1.21069 0.96869 0.94543 0.96062 1.98347 1.80432 1.47721 1.78025 1.21037 0.99323 0.95471 0.93216 1.21072 0.95130 0.97143 1.01238 1.20607 0.93233 0.90976 0.92351 1.98456 1.78854 1.44588 1.77724 0.84985 0.87755 0.90353 0.83258 0.84399 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.90 18.54 42.15 0.78 -10.12 15 2 C 0.24 5.12 13.21 -20.76 -0.27 4.84 15 3 C 0.22 4.29 5.45 -6.83 -0.04 4.25 15 4 N -0.78 -16.41 2.88 -62.77 -0.18 -16.59 15 5 C -0.21 -4.56 7.27 -15.06 -0.11 -4.67 15 6 H 0.13 2.87 5.55 -52.48 -0.29 2.58 15 7 C 0.03 0.62 4.90 -17.43 -0.09 0.54 15 8 N -0.82 -17.36 8.99 55.49 0.50 -16.86 15 9 Si 0.93 16.49 29.62 -169.99 -5.04 11.45 15 10 H -0.26 -4.55 7.11 56.52 0.40 -4.15 15 11 H -0.27 -4.68 7.11 56.52 0.40 -4.28 15 12 H -0.28 -5.02 7.11 56.52 0.40 -4.61 15 13 S 2.50 53.98 5.18 -107.50 -0.56 53.43 15 14 O -0.99 -22.13 15.54 -57.17 -0.89 -23.01 15 15 O -0.96 -22.56 15.30 -57.17 -0.87 -23.44 15 16 C -0.64 -13.06 5.91 -39.55 -0.23 -13.29 15 17 C -0.02 -0.31 9.33 -39.56 -0.37 -0.68 15 18 C -0.06 -0.97 6.32 -39.50 -0.25 -1.22 15 19 Cl -0.07 -1.07 28.96 -51.86 -1.50 -2.58 15 20 C -0.07 -1.09 9.83 -39.55 -0.39 -1.48 15 21 C -0.13 -2.06 9.83 -39.55 -0.39 -2.45 15 22 C 0.06 1.09 6.30 -39.50 -0.25 0.84 15 23 Cl -0.03 -0.50 22.77 -51.86 -1.18 -1.68 15 24 H 0.13 2.39 6.55 -51.93 -0.34 2.05 15 25 H 0.10 1.77 6.95 -51.93 -0.36 1.41 15 26 H 0.29 5.78 8.31 -40.82 -0.34 5.44 15 27 H 0.15 2.71 7.33 -52.49 -0.38 2.32 15 28 H 0.14 1.65 8.06 -52.49 -0.42 1.23 15 29 H 0.14 1.88 8.06 -52.49 -0.42 1.45 15 LS Contribution 298.24 15.07 4.49 4.49 Total: -1.00 -26.60 298.24 -8.19 -34.79 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -1.36 Total: 3.44 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -2.39 Total: -13.32 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 1.10 Total: -43.58 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -1.76 Total: -46.45 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.04 Total: 11.45 kcal Atomic # 16 Polarization: 53.98 SS G_CDS: -0.56 Total: 53.43 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -2.68 Total: -4.26 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.60 -8.19 -34.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000029488.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.246 kcal (2) G-P(sol) polarization free energy of solvation -26.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds