Wall clock time and date at job start Tue Mar 31 2020 05:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47168 * 283.12880 * 3 2 1 5 5 C 1.36939 * 119.99692 * 273.06985 * 4 3 2 6 6 H 1.08007 * 119.99373 * 188.90347 * 5 4 3 7 7 C 1.38814 * 120.00389 * 8.90777 * 5 4 3 8 8 N 1.31613 * 119.99800 * 24.91954 * 7 5 4 9 9 Si 1.86795 * 119.99902 * 204.92213 * 7 5 4 10 10 H 1.48503 * 109.47373 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47258 * 119.99684 * 9 7 5 12 12 H 1.48505 * 109.47065 * 239.99602 * 9 7 5 13 13 S 1.65595 * 120.00124 * 93.06787 * 4 3 2 14 14 O 1.42107 * 106.40098 * 23.54075 * 13 4 3 15 15 O 1.42097 * 106.40403 * 156.46075 * 13 4 3 16 16 C 1.76201 * 107.22261 * 270.00243 * 13 4 3 17 17 C 1.38217 * 120.00229 * 114.72205 * 16 13 4 18 18 C 1.38329 * 119.99992 * 179.72573 * 17 16 13 19 19 Cl 1.73599 * 120.00483 * 180.30063 * 18 17 16 20 20 C 1.38377 * 119.99915 * 0.57205 * 18 17 16 21 21 C 1.38175 * 120.00122 * 359.70570 * 20 18 17 22 22 C 1.38333 * 119.99815 * 295.00281 * 16 13 4 23 23 Cl 1.73602 * 120.00080 * 359.97438 * 22 16 13 24 24 H 1.09001 * 109.46791 * 163.13223 * 3 2 1 25 25 H 1.08998 * 109.47092 * 43.12781 * 3 2 1 26 26 H 0.96996 * 119.99854 * 180.02562 * 8 7 5 27 27 H 1.08000 * 119.99931 * 0.02562 * 17 16 13 28 28 H 1.08000 * 120.00120 * 179.67911 * 20 18 17 29 29 H 1.07997 * 120.00426 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.3129 1.3451 5 6 3.2644 0.6891 2.2633 6 1 3.7573 0.4840 3.2022 7 6 2.8011 1.9682 1.9875 8 7 1.8126 2.1406 1.1358 9 14 3.5806 3.4448 2.8250 10 1 4.6637 2.9853 3.7311 11 1 4.1472 4.3548 1.7974 12 1 2.5503 4.1681 3.6128 13 16 3.4456 -1.8788 1.7552 14 8 3.7136 -2.5620 0.5383 15 8 4.3717 -1.8150 2.8310 16 6 1.9711 -2.5878 2.4094 17 6 1.3469 -3.6241 1.7409 18 6 0.1925 -4.1845 2.2575 19 17 -0.5873 -5.4912 1.4220 20 6 -0.3438 -3.6997 3.4374 21 6 0.2770 -2.6600 4.1027 22 6 1.4352 -2.1035 3.5891 23 17 2.2155 -0.7975 4.4254 24 1 2.9708 0.9843 -0.2982 25 1 2.9717 -0.7492 -0.7025 26 1 1.4891 3.0344 0.9428 27 1 1.7631 -3.9995 0.8177 28 1 -1.2480 -4.1338 3.8380 29 1 -0.1418 -2.2814 5.0234 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000029488.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:46 Heat of formation + Delta-G solvation = -24.665364 kcal Electronic energy + Delta-G solvation = -22529.638215 eV Core-core repulsion = 18825.237630 eV Total energy + Delta-G solvation = -3704.400586 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 333.973 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.34338 -38.49204 -37.97778 -37.61835 -37.16034 -36.31394 -36.23474 -33.56350 -32.44957 -31.54166 -29.26516 -25.90881 -24.47594 -23.87473 -20.45141 -19.90296 -19.36334 -18.40631 -17.90697 -17.26927 -17.12641 -16.34976 -16.12735 -16.09460 -15.30091 -15.13858 -14.99071 -14.69264 -14.14744 -13.67192 -13.54990 -13.47429 -13.39501 -13.23410 -13.02274 -12.78660 -12.63210 -12.56707 -12.39833 -12.26246 -12.06552 -12.00720 -11.79366 -11.67333 -11.60047 -11.09869 -10.51169 -10.22108 -9.72744 -8.56637 -5.85762 -0.45442 -0.16783 -0.08738 0.83460 1.09520 1.51829 1.59449 1.70716 1.91639 2.18041 2.30123 2.40167 2.76463 2.82161 3.16449 3.52239 3.63602 3.79321 3.86841 4.16582 4.21992 4.46440 4.51861 4.69706 4.83216 4.85951 4.88333 5.18331 5.37366 5.39756 6.27498 6.60942 7.06884 7.11161 8.41050 Molecular weight = 333.97amu Principal moments of inertia in cm(-1) A = 0.016086 B = 0.005770 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.255490 B = 4851.445961 C = 5097.365809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.252 3.748 3 C 0.221 3.779 4 N -0.786 5.786 5 C -0.224 4.224 6 H 0.128 0.872 7 C 0.011 3.989 8 N -0.833 5.833 9 Si 0.981 3.019 10 H -0.258 1.258 11 H -0.260 1.260 12 H -0.280 1.280 13 S 2.495 3.505 14 O -1.009 7.009 15 O -0.989 6.989 16 C -0.666 4.666 17 C -0.033 4.033 18 C -0.063 4.063 19 Cl -0.053 7.053 20 C -0.060 4.060 21 C -0.123 4.123 22 C 0.034 3.966 23 Cl -0.036 7.036 24 H 0.145 0.855 25 H 0.125 0.875 26 H 0.289 0.711 27 H 0.147 0.853 28 H 0.178 0.822 29 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 -3.568 2.870 4.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.066 4.066 3 C 0.092 3.908 4 N -0.606 5.606 5 C -0.376 4.376 6 H 0.145 0.855 7 C -0.202 4.202 8 N -0.473 5.473 9 Si 0.803 3.197 10 H -0.182 1.182 11 H -0.184 1.184 12 H -0.206 1.206 13 S 2.596 3.404 14 O -0.998 6.998 15 O -0.979 6.979 16 C -0.743 4.743 17 C -0.053 4.053 18 C -0.090 4.090 19 Cl -0.024 7.024 20 C -0.078 4.078 21 C -0.143 4.143 22 C 0.006 3.994 23 Cl -0.006 7.006 24 H 0.162 0.838 25 H 0.143 0.857 26 H 0.100 0.900 27 H 0.164 0.836 28 H 0.196 0.804 29 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.934 -4.284 2.658 5.833 hybrid contribution -0.381 0.484 0.575 0.843 sum -3.315 -3.800 3.233 5.990 Atomic orbital electron populations 1.80864 1.14643 1.13263 1.09864 1.29830 0.95944 0.89421 0.91429 1.19321 0.80085 1.06336 0.85068 1.55924 1.70315 1.19353 1.15009 1.20692 1.27701 0.85793 1.03376 0.85512 1.26254 0.94706 1.01601 0.97596 1.69957 1.20081 1.25755 1.31518 0.85003 0.78687 0.77095 0.78882 1.18162 1.18432 1.20614 1.13934 0.79053 0.74633 0.72800 1.93291 1.86154 1.74900 1.45494 1.93351 1.62848 1.86262 1.55423 1.32310 1.28271 1.08718 1.04985 1.20859 0.93016 0.92669 0.98787 1.21223 0.96340 0.94863 0.96586 1.98354 1.79792 1.46541 1.77726 1.21510 0.99922 0.94346 0.92068 1.21481 0.93882 0.96784 1.02106 1.20857 0.94524 0.91422 0.92571 1.98442 1.79281 1.45173 1.77712 0.83774 0.85714 0.90008 0.83552 0.80448 0.81153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.15 18.54 20.01 0.37 -22.78 15 2 C 0.25 10.67 13.21 89.44 1.18 11.85 15 3 C 0.22 8.36 5.45 84.57 0.46 8.82 15 4 N -0.79 -32.86 2.88 -352.50 -1.02 -33.88 15 5 C -0.22 -9.44 7.27 84.03 0.61 -8.83 15 6 H 0.13 5.49 5.55 -2.91 -0.02 5.48 15 7 C 0.01 0.45 4.90 84.86 0.42 0.86 15 8 N -0.83 -34.57 8.99 21.65 0.19 -34.38 15 9 Si 0.98 32.70 29.62 68.60 2.03 34.73 15 10 H -0.26 -8.61 7.11 99.48 0.71 -7.90 15 11 H -0.26 -8.24 7.11 99.48 0.71 -7.54 15 12 H -0.28 -9.54 7.11 99.48 0.71 -8.83 15 13 S 2.49 108.96 5.18 -56.49 -0.29 108.67 15 14 O -1.01 -45.37 15.54 -128.00 -1.99 -47.36 15 15 O -0.99 -47.12 15.30 -128.00 -1.96 -49.08 15 16 C -0.67 -26.98 5.91 22.29 0.13 -26.85 15 17 C -0.03 -1.24 9.33 22.29 0.21 -1.03 15 18 C -0.06 -1.98 6.32 22.32 0.14 -1.84 15 19 Cl -0.05 -1.43 28.96 -2.72 -0.08 -1.50 15 20 C -0.06 -1.65 9.83 22.29 0.22 -1.43 15 21 C -0.12 -3.74 9.83 22.29 0.22 -3.52 15 22 C 0.03 1.30 6.30 22.33 0.14 1.45 15 23 Cl -0.04 -1.36 22.77 -2.72 -0.06 -1.43 15 24 H 0.14 5.09 6.55 -2.39 -0.02 5.07 15 25 H 0.13 4.17 6.95 -2.39 -0.02 4.15 15 26 H 0.29 11.38 8.31 -92.71 -0.77 10.61 15 27 H 0.15 5.35 7.33 -2.91 -0.02 5.33 15 28 H 0.18 3.43 8.06 -2.91 -0.02 3.41 15 29 H 0.17 4.02 8.06 -2.91 -0.02 3.99 15 Total: -1.00 -55.91 298.24 2.16 -53.75 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 1.23 Total: 13.77 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 3.73 Total: -20.52 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -0.45 Total: -91.03 kcal Atomic # 8 Polarization: -92.49 SS G_CDS: -3.95 Total: -96.44 kcal Atomic # 14 Polarization: 32.70 SS G_CDS: 2.03 Total: 34.73 kcal Atomic # 16 Polarization: 108.96 SS G_CDS: -0.29 Total: 108.67 kcal Atomic # 17 Polarization: -2.79 SS G_CDS: -0.14 Total: -2.93 kcal Total: -55.91 2.16 -53.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000029488.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.086 kcal (2) G-P(sol) polarization free energy of solvation -55.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds