Wall clock time and date at job start Tue Mar 31 2020 05:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47208 * 187.24455 * 3 2 1 5 5 C 1.37095 * 120.00385 * 266.41718 * 4 3 2 6 6 H 1.08002 * 119.99990 * 141.41139 * 5 4 3 7 7 C 1.38949 * 119.99882 * 321.40743 * 5 4 3 8 8 N 1.31412 * 120.00046 * 162.10311 * 7 5 4 9 9 Si 1.86800 * 120.00056 * 342.10856 * 7 5 4 10 10 H 1.48502 * 109.47275 * 95.33569 * 9 7 5 11 11 H 1.48501 * 109.46924 * 215.33644 * 9 7 5 12 12 H 1.48503 * 109.47152 * 335.33081 * 9 7 5 13 13 C 1.34780 * 119.99642 * 86.41328 * 4 3 2 14 14 O 1.21291 * 120.00130 * 186.13346 * 13 4 3 15 15 C 1.50709 * 120.00125 * 6.13779 * 13 4 3 16 16 C 1.50453 * 109.26439 * 103.71235 * 15 13 4 17 17 C 1.38396 * 119.35429 * 282.29752 * 16 15 13 18 18 C 1.38156 * 120.23020 * 179.97438 * 17 16 15 19 19 C 1.38290 * 120.03031 * 359.97438 * 18 17 16 20 20 C 1.37886 * 119.99224 * 359.89292 * 19 18 17 21 21 C 1.38464 * 120.80924 * 102.26493 * 16 15 13 22 22 O 1.35459 * 120.99854 * 0.13209 * 21 16 15 23 23 C 1.35469 * 120.06898 * 20.43586 * 22 21 16 24 24 C 1.39057 * 119.23682 * 159.50399 * 23 22 21 25 25 C 1.38010 * 120.11902 * 180.02562 * 24 23 22 26 26 C 1.38295 * 120.00186 * 359.95237 * 25 24 23 27 27 C 1.38157 * 120.02276 * 359.97438 * 26 25 24 28 28 C 1.38394 * 120.23679 * 0.06825 * 27 26 25 29 29 H 1.09000 * 109.46845 * 67.25089 * 3 2 1 30 30 H 1.08999 * 109.46890 * 307.25057 * 3 2 1 31 31 H 0.96993 * 120.00256 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.25973 * 344.21504 * 15 13 4 33 33 H 1.07994 * 119.88660 * 359.96700 * 17 16 15 34 34 H 1.08006 * 119.98201 * 179.97438 * 18 17 16 35 35 H 1.08006 * 120.00167 * 180.02562 * 19 18 17 36 36 H 1.07997 * 119.91869 * 180.02562 * 20 19 18 37 37 H 1.07997 * 119.94035 * 359.97438 * 24 23 22 38 38 H 1.08000 * 119.99940 * 179.97438 * 25 24 23 39 39 H 1.07996 * 119.98771 * 180.02562 * 26 25 24 40 40 H 1.08001 * 119.87991 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3710 0.1742 5 6 3.3939 2.1372 -0.9229 6 1 3.1515 3.1897 -0.9285 7 6 4.0079 1.5597 -2.0275 8 7 3.9802 2.1724 -3.1897 9 14 4.8726 -0.0876 -1.8605 10 1 3.9451 -1.1764 -2.2601 11 1 6.0696 -0.1096 -2.7392 12 1 5.2908 -0.2864 -0.4495 13 6 3.2513 1.8785 1.4130 14 8 3.5476 3.0458 1.5574 15 6 3.0572 0.9956 2.6189 16 6 4.4011 0.6294 3.1875 17 6 5.1556 -0.3513 2.5675 18 6 6.3924 -0.7015 3.0739 19 6 6.8813 -0.0715 4.2037 20 6 6.1352 0.9082 4.8239 21 6 4.8886 1.2612 4.3190 22 8 4.1691 2.2228 4.9456 23 6 2.8307 2.3033 4.7527 24 6 2.0491 2.9754 5.6861 25 6 0.6837 3.0680 5.5079 26 6 0.0905 2.4927 4.3990 27 6 0.8643 1.8256 3.4690 28 6 2.2339 1.7287 3.6428 29 1 2.9715 -0.3966 -0.9477 30 1 2.9716 -0.6212 0.8180 31 1 4.4084 1.7691 -3.9609 32 1 2.5339 0.0877 2.3193 33 1 4.7762 -0.8447 1.6849 34 1 6.9776 -1.4677 2.5871 35 1 7.8485 -0.3453 4.5989 36 1 6.5184 1.3998 5.7059 37 1 2.5113 3.4249 6.5524 38 1 0.0785 3.5900 6.2342 39 1 -0.9779 2.5656 4.2595 40 1 0.3987 1.3775 2.6036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000030232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:19 Heat of formation + Delta-G solvation = 48.677283 kcal Electronic energy + Delta-G solvation = -28816.717888 eV Core-core repulsion = 24949.276695 eV Total energy + Delta-G solvation = -3867.441193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.110 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.62110 -39.16549 -38.68029 -37.26356 -36.40011 -34.86298 -33.79791 -32.19589 -31.20092 -30.36053 -29.59689 -27.97984 -27.09311 -24.79146 -23.75695 -23.08682 -21.80714 -20.62487 -19.11638 -18.91233 -18.54305 -17.06071 -16.92763 -16.62407 -15.96098 -15.81350 -15.44915 -15.17474 -14.91117 -14.69271 -14.08591 -13.98082 -13.75109 -13.66850 -13.32152 -13.18499 -12.83242 -12.77565 -12.69452 -12.53008 -12.32034 -12.08952 -12.02352 -11.78976 -11.59315 -11.42446 -11.09820 -10.85740 -10.72618 -10.43103 -10.08291 -9.47565 -9.20424 -8.97907 -8.90499 -8.51107 -8.15144 -7.76030 -6.54489 -4.20959 1.10398 1.23212 1.35016 1.63583 2.80163 2.87636 2.97457 2.98851 3.01989 3.14435 3.34706 3.71232 3.73060 3.94430 4.21291 4.33479 4.50384 4.63285 4.77215 4.80919 4.88724 5.03018 5.10634 5.16471 5.21408 5.26129 5.32841 5.37396 5.48513 5.49814 5.56241 5.58020 5.85655 5.90340 6.02429 6.10969 6.30584 6.40375 6.46251 6.49954 6.54070 6.68105 6.92626 7.29124 7.63104 7.82714 8.01727 8.23857 8.70708 9.05359 9.41219 10.56886 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.010809 B = 0.006059 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.897235 B = 4619.953721 C = 6166.137044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.202 3.798 3 C 0.174 3.826 4 N -0.461 5.461 5 C -0.323 4.323 6 H 0.111 0.889 7 C 0.063 3.937 8 N -0.856 5.856 9 Si 0.858 3.142 10 H -0.268 1.268 11 H -0.278 1.278 12 H -0.252 1.252 13 C 0.493 3.507 14 O -0.526 6.526 15 C -0.028 4.028 16 C -0.128 4.128 17 C -0.078 4.078 18 C -0.141 4.141 19 C -0.088 4.088 20 C -0.138 4.138 21 C 0.132 3.868 22 O -0.241 6.241 23 C 0.132 3.868 24 C -0.138 4.138 25 C -0.089 4.089 26 C -0.141 4.141 27 C -0.076 4.076 28 C -0.121 4.121 29 H 0.115 0.885 30 H 0.107 0.893 31 H 0.277 0.723 32 H 0.102 0.898 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.683 -8.219 15.616 17.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.117 4.117 3 C 0.047 3.953 4 N -0.185 5.185 5 C -0.449 4.449 6 H 0.129 0.871 7 C -0.144 4.144 8 N -0.491 5.491 9 Si 0.685 3.315 10 H -0.196 1.196 11 H -0.204 1.204 12 H -0.176 1.176 13 C 0.280 3.720 14 O -0.402 6.402 15 C -0.050 4.050 16 C -0.130 4.130 17 C -0.096 4.096 18 C -0.159 4.159 19 C -0.106 4.106 20 C -0.156 4.156 21 C 0.088 3.912 22 O -0.150 6.150 23 C 0.088 3.912 24 C -0.156 4.156 25 C -0.107 4.107 26 C -0.159 4.159 27 C -0.095 4.095 28 C -0.122 4.122 29 H 0.132 0.868 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.325 -7.413 15.580 17.257 hybrid contribution 0.829 -0.883 -0.640 1.370 sum 1.154 -8.296 14.940 17.128 Atomic orbital electron populations 1.81065 1.12944 1.08011 1.09081 1.29983 0.95747 0.93151 0.92860 1.19661 0.81439 0.89416 1.04821 1.43568 1.58090 1.11008 1.05810 1.19080 1.39396 0.95553 0.90905 0.87119 1.25381 0.95814 0.98409 0.94832 1.69688 1.40323 1.39668 0.99387 0.87224 0.80705 0.83531 0.80054 1.19563 1.20436 1.17554 1.19900 0.80766 0.88526 0.82858 1.90615 1.48237 1.16627 1.84764 1.19033 0.92842 0.99088 0.94020 1.19326 0.96974 1.00191 0.96467 1.20972 0.94409 0.95740 0.98522 1.21049 0.96057 1.01545 0.97262 1.20893 0.99210 0.95080 0.95379 1.20466 0.93089 0.99960 1.02084 1.18607 0.92101 0.88786 0.91717 1.83829 1.17721 1.48282 1.65209 1.18573 0.80785 0.97779 0.94017 1.20482 0.93090 1.02982 0.99047 1.20901 0.93484 0.98616 0.97743 1.21036 1.00100 0.99741 0.95002 1.20884 0.92011 0.97871 0.98703 1.19311 0.94670 1.03022 0.95187 0.86813 0.87518 0.91196 0.88015 0.85346 0.85380 0.85031 0.84849 0.84884 0.85088 0.85541 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.43 18.54 42.15 0.78 -7.65 16 2 C 0.20 3.75 15.47 -20.76 -0.32 3.42 16 3 C 0.17 3.12 4.15 -6.83 -0.03 3.10 16 4 N -0.46 -10.37 2.15 -117.94 -0.25 -10.62 16 5 C -0.32 -8.59 9.42 -14.93 -0.14 -8.73 16 6 H 0.11 3.40 7.88 -52.49 -0.41 2.98 16 7 C 0.06 1.61 5.35 -17.47 -0.09 1.52 16 8 N -0.86 -23.49 13.96 55.50 0.77 -22.71 16 9 Si 0.86 17.68 24.78 -169.99 -4.21 13.46 16 10 H -0.27 -5.02 6.73 56.52 0.38 -4.64 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.25 -4.71 6.58 56.52 0.37 -4.33 16 13 C 0.49 11.11 6.32 -10.98 -0.07 11.04 16 14 O -0.53 -14.16 16.51 5.55 0.09 -14.07 16 15 C -0.03 -0.51 1.97 -94.31 -0.19 -0.70 16 16 C -0.13 -2.18 5.04 -104.60 -0.53 -2.71 16 17 C -0.08 -1.16 9.63 -39.55 -0.38 -1.54 16 18 C -0.14 -1.75 10.04 -39.59 -0.40 -2.14 16 19 C -0.09 -1.01 10.03 -39.69 -0.40 -1.41 16 20 C -0.14 -1.83 9.96 -39.41 -0.39 -2.23 16 21 C 0.13 2.19 6.57 -39.19 -0.26 1.93 16 22 O -0.24 -4.19 9.84 -0.93 -0.01 -4.20 16 23 C 0.13 2.25 6.57 -39.18 -0.26 2.00 16 24 C -0.14 -1.92 9.96 -39.36 -0.39 -2.31 16 25 C -0.09 -1.11 10.04 -39.64 -0.40 -1.50 16 26 C -0.14 -1.91 10.04 -39.59 -0.40 -2.31 16 27 C -0.08 -1.25 9.64 -39.55 -0.38 -1.63 16 28 C -0.12 -2.14 4.70 -104.59 -0.49 -2.64 16 29 H 0.11 2.07 3.25 -51.93 -0.17 1.90 16 30 H 0.11 1.47 4.71 -51.93 -0.24 1.23 16 31 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.10 1.57 5.50 -51.93 -0.29 1.28 16 33 H 0.13 1.73 6.10 -52.49 -0.32 1.41 16 34 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 343.27 15.07 5.17 5.17 Total: -1.00 -32.77 343.27 -6.75 -39.51 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -3.58 Total: 7.95 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -5.51 Total: -6.84 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 1.30 Total: -40.98 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.08 Total: -18.27 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -4.21 Total: 13.46 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.77 -6.75 -39.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000030232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.192 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds