Wall clock time and date at job start Tue Mar 31 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86796 * 120.00447 * 2 1 4 4 H 1.48497 * 109.47155 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47248 * 299.99776 * 3 2 1 6 6 H 1.48506 * 109.47004 * 59.99963 * 3 2 1 7 7 C 1.39911 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00126 * 175.58394 * 7 2 1 9 9 C 1.41140 * 120.00373 * 355.58245 * 7 2 1 10 10 C 1.40874 * 120.16543 * 214.77488 * 9 7 2 11 11 C 1.36356 * 119.83508 * 180.02562 * 10 9 7 12 12 C 1.39513 * 120.16325 * 0.02639 * 11 10 9 13 13 N 1.39128 * 119.83755 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99729 * 35.29032 * 13 12 11 15 15 O 1.21563 * 120.00515 * 355.99138 * 14 13 12 16 16 C 1.47738 * 119.99574 * 175.70560 * 14 13 12 17 17 C 1.39662 * 120.12845 * 180.02562 * 16 14 13 18 18 C 1.37876 * 119.89384 * 180.02562 * 17 16 14 19 19 C 1.38511 * 120.14743 * 359.97438 * 18 17 16 20 20 Cl 1.73597 * 119.87163 * 180.02562 * 19 18 17 21 21 C 1.38602 * 120.25865 * 0.02562 * 19 18 17 22 22 Cl 1.73598 * 119.94704 * 180.02562 * 21 19 18 23 23 C 1.38032 * 120.10834 * 359.72952 * 21 19 18 24 24 C 1.39511 * 120.33000 * 0.24782 * 12 11 10 25 25 C 1.36364 * 120.16363 * 359.44291 * 24 12 11 26 26 H 0.97005 * 119.99684 * 0.02562 * 1 2 3 27 27 H 1.08006 * 120.08323 * 0.02562 * 10 9 7 28 28 H 1.07994 * 119.92030 * 179.97438 * 11 10 9 29 29 H 0.96996 * 120.00199 * 215.29571 * 13 12 11 30 30 H 1.08001 * 120.05062 * 0.02562 * 17 16 14 31 31 H 1.07994 * 119.92537 * 179.97438 * 18 17 16 32 32 H 1.08001 * 120.07267 * 180.29597 * 23 21 19 33 33 H 1.07996 * 119.92202 * 179.73038 * 24 12 11 34 34 H 1.07996 * 120.08625 * 180.25014 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.7027 1.3462 0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0081 -1.2117 0.0005 8 1 3.0858 -1.2132 -0.0715 9 6 1.3056 -2.4322 0.0952 10 6 1.8647 -3.5182 0.7970 11 6 1.1803 -4.6944 0.8838 12 6 -0.0704 -4.8239 0.2793 13 7 -0.7625 -6.0273 0.3717 14 6 -0.6811 -6.7669 1.4955 15 8 0.0536 -6.4200 2.3997 16 6 -1.4897 -7.9959 1.6310 17 6 -1.4079 -8.7641 2.7944 18 6 -2.1643 -9.9105 2.9155 19 6 -3.0049 -10.3013 1.8864 20 17 -3.9545 -11.7456 2.0467 21 6 -3.0909 -9.5435 0.7290 22 17 -4.1477 -10.0404 -0.5556 23 6 -2.3423 -8.3912 0.5985 24 6 -0.6280 -3.7547 -0.4222 25 6 0.0419 -2.5704 -0.5121 26 1 -0.4850 0.8401 -0.0004 27 1 2.8330 -3.4195 1.2651 28 1 1.6078 -5.5279 1.4211 29 1 -1.3036 -6.3340 -0.3726 30 1 -0.7532 -8.4607 3.5980 31 1 -2.1011 -10.5052 3.8148 32 1 -2.4133 -7.7987 -0.3016 33 1 -1.5946 -3.8636 -0.8913 34 1 -0.3927 -1.7422 -1.0521 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000037229.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:54 Heat of formation + Delta-G solvation = -0.712095 kcal Electronic energy + Delta-G solvation = -22089.648494 eV Core-core repulsion = 18424.790176 eV Total energy + Delta-G solvation = -3664.858318 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 335.022 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.48320 -39.00110 -37.36103 -36.91221 -36.67581 -34.63627 -33.13750 -31.51874 -31.09442 -29.64117 -28.84014 -25.47460 -23.94671 -23.18376 -21.67141 -20.92480 -19.91637 -18.40922 -17.38404 -16.80708 -16.73584 -15.86532 -15.47106 -15.18411 -14.96413 -14.44279 -14.22723 -14.09111 -13.89893 -13.10384 -12.85513 -12.61589 -12.26039 -12.21752 -12.19218 -11.79576 -11.65365 -11.48507 -11.40989 -11.24816 -11.20788 -11.02495 -10.79258 -10.12851 -9.60097 -9.54230 -9.43019 -9.27582 -9.08922 -8.98021 -7.61596 -6.94291 -6.67683 -4.39960 0.24650 0.66391 1.42608 1.78860 2.40527 2.78089 3.03530 3.06900 3.11179 3.14436 3.41364 3.63428 3.94164 4.15045 4.50999 4.64469 4.67529 4.82737 4.88090 5.19283 5.42349 5.57703 5.62836 5.86178 6.09600 6.13212 6.36957 6.63950 6.83070 7.00229 7.12356 7.22574 7.57371 7.64214 7.76961 7.99997 8.14120 8.24802 8.50812 8.61053 8.86903 8.92704 10.23207 Molecular weight = 335.02amu Principal moments of inertia in cm(-1) A = 0.030727 B = 0.002190 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.036251 B =12784.108607 C =13386.444212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.458 4.458 8 H 0.077 0.923 9 C 0.102 3.898 10 C -0.206 4.206 11 C -0.082 4.082 12 C -0.003 4.003 13 N -0.639 5.639 14 C 0.539 3.461 15 O -0.520 6.520 16 C -0.103 4.103 17 C -0.047 4.047 18 C -0.105 4.105 19 C -0.016 4.016 20 Cl -0.047 7.047 21 C -0.038 4.038 22 Cl -0.045 7.045 23 C -0.071 4.071 24 C -0.117 4.117 25 C -0.142 4.142 26 H 0.278 0.722 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.395 0.605 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.092 0.908 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.115 -18.115 0.974 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.147 4.147 3 Si 0.741 3.259 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.099 3.901 10 C -0.226 4.226 11 C -0.102 4.102 12 C -0.095 4.095 13 N -0.281 5.281 14 C 0.326 3.674 15 O -0.397 6.397 16 C -0.107 4.107 17 C -0.066 4.066 18 C -0.123 4.123 19 C -0.044 4.044 20 Cl -0.018 7.018 21 C -0.065 4.065 22 Cl -0.016 7.016 23 C -0.091 4.091 24 C -0.137 4.137 25 C -0.162 4.162 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.230 0.770 30 H 0.172 0.828 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.110 0.890 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.978 -17.861 1.510 19.620 hybrid contribution -0.317 0.444 -0.406 0.680 sum -8.295 -17.416 1.104 19.323 Atomic orbital electron populations 1.69766 1.07317 1.28735 1.37803 1.25905 0.94965 1.01276 0.92510 0.86132 0.80603 0.80733 0.78442 1.18540 1.19952 1.19943 1.19562 0.94839 0.90185 1.44271 0.90450 1.17757 0.92248 0.92034 0.88058 1.20809 1.01309 0.94908 1.05592 1.20389 0.92649 0.97859 0.99265 1.17226 0.94409 0.85586 1.12329 1.42881 1.48237 1.21235 1.15750 1.17991 0.83082 0.83435 0.82876 1.90789 1.38899 1.70294 1.39760 1.20235 0.98416 0.96862 0.95140 1.21407 0.96374 0.91791 0.97017 1.21053 0.95569 0.97452 0.98271 1.20999 0.97573 0.90880 0.94971 1.98399 1.70487 1.35223 1.97667 1.20611 0.98342 0.96865 0.90706 1.98403 1.63940 1.90857 1.48391 1.21244 0.94097 0.94300 0.99435 1.20314 0.98346 0.93074 1.01964 1.21201 0.97298 0.95558 1.02125 0.91102 0.88461 0.87416 0.77014 0.82814 0.83275 0.83550 0.88985 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.64 10.60 55.55 0.59 -20.05 16 2 C 0.07 1.71 5.42 -17.34 -0.09 1.61 16 3 Si 0.92 18.66 29.56 -169.99 -5.03 13.63 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.46 -11.96 9.02 -37.85 -0.34 -12.30 16 8 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 9 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 10 C -0.21 -5.08 9.74 -39.26 -0.38 -5.47 16 11 C -0.08 -1.89 8.61 -39.78 -0.34 -2.24 16 12 C 0.00 -0.07 6.30 -83.60 -0.53 -0.60 16 13 N -0.64 -10.70 5.25 -10.62 -0.06 -10.75 16 14 C 0.54 8.98 7.60 -12.38 -0.09 8.88 16 15 O -0.52 -10.57 13.77 5.31 0.07 -10.49 16 16 C -0.10 -1.28 5.87 -104.97 -0.62 -1.90 16 17 C -0.05 -0.50 9.59 -39.18 -0.38 -0.88 16 18 C -0.10 -0.93 9.81 -39.61 -0.39 -1.32 16 19 C -0.02 -0.16 6.33 -39.35 -0.25 -0.41 16 20 Cl -0.05 -0.42 27.94 -51.86 -1.45 -1.86 16 21 C -0.04 -0.38 6.32 -39.52 -0.25 -0.63 16 22 Cl -0.05 -0.43 27.94 -51.86 -1.45 -1.88 16 23 C -0.07 -0.75 9.32 -39.15 -0.36 -1.11 16 24 C -0.12 -2.57 9.90 -39.78 -0.39 -2.97 16 25 C -0.14 -3.55 8.61 -39.26 -0.34 -3.89 16 26 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 27 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 28 H 0.11 2.44 6.23 -52.49 -0.33 2.12 16 29 H 0.40 5.12 6.86 -40.82 -0.28 4.84 16 30 H 0.15 1.62 7.65 -52.49 -0.40 1.22 16 31 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.15 1.28 6.41 -52.49 -0.34 0.95 16 33 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.13 3.43 6.13 -52.49 -0.32 3.11 16 LS Contribution 327.96 15.07 4.94 4.94 Total: -1.00 -28.87 327.96 -10.21 -39.07 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -2.48 Total: 8.53 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -5.35 Total: -21.14 kcal Atomic # 7 Polarization: -31.34 SS G_CDS: 0.53 Total: -30.80 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.49 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -2.90 Total: -3.74 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.87 -10.21 -39.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000037229.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.359 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds