Wall clock time and date at job start Tue Mar 31 2020 05:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86799 * 120.00127 * 2 1 4 4 H 1.48490 * 109.47086 * 269.99617 * 3 2 1 5 5 H 1.48495 * 109.47038 * 30.00155 * 3 2 1 6 6 H 1.48506 * 109.46815 * 149.99590 * 3 2 1 7 7 C 1.39906 * 119.99422 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99414 * 175.56138 * 7 2 1 9 9 C 1.41126 * 120.00088 * 355.55891 * 7 2 1 10 10 C 1.40886 * 120.15874 * 214.78252 * 9 7 2 11 11 C 1.36353 * 119.82996 * 180.02562 * 10 9 7 12 12 C 1.39518 * 120.16739 * 0.02562 * 11 10 9 13 13 N 1.39084 * 119.83868 * 179.97438 * 12 11 10 14 14 C 1.34784 * 119.99910 * 35.30966 * 13 12 11 15 15 O 1.21719 * 119.99786 * 355.71792 * 14 13 12 16 16 C 1.46491 * 120.00094 * 175.71362 * 14 13 12 17 17 C 1.36644 * 125.98443 * 180.02562 * 16 14 13 18 18 C 1.40251 * 106.73003 * 180.02562 * 17 16 14 19 19 C 1.35326 * 107.12502 * 359.97438 * 18 17 16 20 20 Br 1.89097 * 125.63099 * 179.97438 * 19 18 17 21 21 O 1.33965 * 108.74401 * 0.02562 * 19 18 17 22 22 C 1.39522 * 120.32663 * 0.26973 * 12 11 10 23 23 C 1.36352 * 120.16404 * 359.44738 * 22 12 11 24 24 H 0.97007 * 119.99727 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.08629 * 0.02562 * 10 9 7 26 26 H 1.08005 * 119.91609 * 179.97438 * 11 10 9 27 27 H 0.97001 * 120.00537 * 215.30670 * 13 12 11 28 28 H 1.08003 * 126.63238 * 0.02562 * 17 16 14 29 29 H 1.08003 * 126.43960 * 179.74407 * 18 17 16 30 30 H 1.08003 * 119.92044 * 179.73018 * 22 12 11 31 31 H 1.08000 * 120.08820 * 180.24699 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4904 2.0463 -1.4000 5 1 1.4403 2.6526 0.7000 6 1 3.5404 1.4400 0.7002 7 6 2.0082 -1.2117 0.0005 8 1 3.0858 -1.2131 -0.0718 9 6 1.3056 -2.4319 0.0957 10 6 1.8650 -3.5178 0.7978 11 6 1.1806 -4.6939 0.8851 12 6 -0.0703 -4.8237 0.2810 13 7 -0.7622 -6.0266 0.3739 14 6 -0.6809 -6.7658 1.4980 15 8 0.0586 -6.4206 2.4011 16 6 -1.4824 -7.9845 1.6329 17 6 -1.4957 -8.8212 2.7131 18 6 -2.3980 -9.8525 2.4139 19 6 -2.8917 -9.6041 1.1787 20 35 -4.1549 -10.6717 0.2620 21 8 -2.3370 -8.4775 0.7119 22 6 -0.6279 -3.7547 -0.4212 23 6 0.0422 -2.5707 -0.5121 24 1 -0.4850 0.8401 -0.0004 25 1 2.8334 -3.4190 1.2656 26 1 1.6083 -5.5274 1.4226 27 1 -1.3034 -6.3337 -0.3703 28 1 -0.9223 -8.7099 3.6216 29 1 -2.6486 -10.6898 3.0484 30 1 -1.5947 -3.8638 -0.8900 31 1 -0.3923 -1.7427 -1.0525 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000037327.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:27 Heat of formation + Delta-G solvation = 13.098388 kcal Electronic energy + Delta-G solvation = -19222.458522 eV Core-core repulsion = 15903.062221 eV Total energy + Delta-G solvation = -3319.396301 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 334.994 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.94360 -39.63590 -37.31206 -34.68215 -33.55646 -32.97704 -32.37375 -29.83488 -29.56027 -28.50859 -25.26725 -23.10421 -22.12844 -21.48685 -20.76684 -19.92974 -18.40569 -17.36073 -16.73400 -16.52478 -16.14878 -15.22516 -14.55076 -14.45250 -13.94143 -13.49248 -13.31866 -13.25004 -13.03719 -12.69744 -12.20644 -11.77915 -11.67352 -11.43974 -11.21109 -11.09385 -11.05526 -10.79786 -10.32125 -10.24294 -9.67381 -9.55125 -9.31765 -9.00884 -8.82183 -7.61670 -6.95061 -6.67651 -4.40100 0.46588 0.72667 1.94592 2.59436 2.80520 3.04064 3.06169 3.08025 3.13028 3.42346 3.60240 3.94200 4.53844 4.64413 4.81373 5.14276 5.35566 5.49260 5.59615 5.95501 6.13499 6.34821 6.37427 6.62668 6.84788 6.99685 7.11139 7.22351 7.57056 7.63594 7.74217 7.99525 8.12959 8.24376 8.45145 8.59732 8.86565 8.92278 10.23111 Molecular weight = 334.99amu Principal moments of inertia in cm(-1) A = 0.036435 B = 0.002245 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.298637 B =12471.312529 C =12994.823562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.069 3.931 3 Si 0.917 3.083 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.458 4.458 8 H 0.077 0.923 9 C 0.103 3.897 10 C -0.206 4.206 11 C -0.081 4.081 12 C -0.008 4.008 13 N -0.630 5.630 14 C 0.580 3.420 15 O -0.504 6.504 16 C -0.033 4.033 17 C -0.131 4.131 18 C -0.161 4.161 19 C -0.016 4.016 20 Br 0.055 6.945 21 O -0.148 6.148 22 C -0.114 4.114 23 C -0.142 4.142 24 H 0.279 0.721 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.401 0.599 28 H 0.170 0.830 29 H 0.166 0.834 30 H 0.093 0.907 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.343 -19.203 0.263 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.147 4.147 3 Si 0.742 3.258 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.488 4.488 8 H 0.095 0.905 9 C 0.100 3.900 10 C -0.226 4.226 11 C -0.101 4.101 12 C -0.100 4.100 13 N -0.272 5.272 14 C 0.366 3.634 15 O -0.382 6.382 16 C -0.088 4.088 17 C -0.152 4.152 18 C -0.183 4.183 19 C -0.146 4.146 20 Br 0.139 6.861 21 O -0.044 6.044 22 C -0.134 4.134 23 C -0.162 4.162 24 H 0.090 0.910 25 H 0.116 0.884 26 H 0.126 0.874 27 H 0.236 0.764 28 H 0.188 0.812 29 H 0.184 0.816 30 H 0.111 0.889 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.550 -19.019 0.267 21.284 hybrid contribution 0.116 0.693 0.024 0.703 sum -9.433 -18.326 0.290 20.613 Atomic orbital electron populations 1.69763 1.07328 1.28879 1.37551 1.25913 0.94970 1.01292 0.92485 0.86167 0.80247 0.80328 0.79097 1.19468 1.20253 1.18661 1.19529 0.94838 0.90194 1.44261 0.90453 1.17757 0.92222 0.92010 0.87961 1.20807 1.01334 0.94843 1.05621 1.20399 0.92588 0.97893 0.99239 1.17236 0.94514 0.85511 1.12704 1.42868 1.47766 1.21056 1.15476 1.16523 0.82286 0.81241 0.83393 1.90898 1.38177 1.68803 1.40309 1.22718 0.97159 0.98719 0.90209 1.21982 1.00160 0.93294 0.99811 1.21708 0.99588 1.01957 0.94999 1.24207 1.02658 0.91323 0.96416 1.96878 1.50860 1.60606 1.77805 1.84137 1.45839 1.32838 1.41613 1.20321 0.98365 0.92993 1.01722 1.21200 0.97307 0.95537 1.02151 0.91015 0.88368 0.87371 0.76429 0.81231 0.81602 0.88894 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.71 10.60 55.55 0.59 -20.13 16 2 C 0.07 1.72 5.42 -17.33 -0.09 1.62 16 3 Si 0.92 18.71 29.56 -169.99 -5.03 13.69 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.00 9.02 -37.86 -0.34 -12.35 16 8 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 9 C 0.10 2.72 5.55 -106.80 -0.59 2.13 16 10 C -0.21 -5.13 9.74 -39.26 -0.38 -5.51 16 11 C -0.08 -1.92 8.61 -39.78 -0.34 -2.26 16 12 C -0.01 -0.17 6.30 -83.61 -0.53 -0.69 16 13 N -0.63 -11.46 5.29 -10.97 -0.06 -11.52 16 14 C 0.58 10.50 7.61 -12.93 -0.10 10.40 16 15 O -0.50 -10.69 14.28 5.17 0.07 -10.61 16 16 C -0.03 -0.49 7.12 -36.83 -0.26 -0.75 16 17 C -0.13 -1.62 10.62 -39.40 -0.42 -2.04 16 18 C -0.16 -1.64 10.82 -39.86 -0.43 -2.07 16 19 C -0.02 -0.18 7.80 29.69 0.23 0.05 16 20 Br 0.05 0.47 34.09 -68.01 -2.32 -1.85 16 21 O -0.15 -1.98 10.41 4.75 0.05 -1.93 16 22 C -0.11 -2.58 9.90 -39.78 -0.39 -2.97 16 23 C -0.14 -3.60 8.61 -39.26 -0.34 -3.94 16 24 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 25 H 0.10 2.31 8.06 -52.48 -0.42 1.88 16 26 H 0.11 2.49 6.22 -52.48 -0.33 2.16 16 27 H 0.40 6.07 8.57 -40.82 -0.35 5.72 16 28 H 0.17 1.89 8.06 -52.48 -0.42 1.47 16 29 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 30 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 31 H 0.13 3.47 6.14 -52.49 -0.32 3.15 16 LS Contribution 301.98 15.07 4.55 4.55 Total: -1.00 -28.61 301.98 -8.37 -36.97 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -2.24 Total: 9.20 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -3.99 Total: -18.37 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.53 Total: -31.65 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.12 Total: -12.54 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.69 kcal Atomic # 35 Polarization: 0.47 SS G_CDS: -2.32 Total: -1.85 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.61 -8.37 -36.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000037327.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.073 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds