Wall clock time and date at job start Tue Mar 31 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30798 * 1 3 3 Si 1.86796 * 119.99872 * 2 1 4 4 H 1.48500 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47142 * 299.99948 * 3 2 1 6 6 H 1.48492 * 109.47322 * 59.99896 * 3 2 1 7 7 C 1.40034 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00002 * 198.00997 * 7 2 1 9 9 C 1.40782 * 119.99750 * 18.00652 * 7 2 1 10 10 C 1.41078 * 120.07427 * 24.80732 * 9 7 2 11 11 C 1.36024 * 119.91876 * 180.02562 * 10 9 7 12 12 C 1.40432 * 120.07914 * 0.02562 * 11 10 9 13 13 N 1.35968 * 119.92507 * 179.97438 * 12 11 10 14 14 C 1.30821 * 119.99972 * 134.99481 * 13 12 11 15 15 C 1.46761 * 119.99836 * 179.97438 * 14 13 12 16 16 C 1.40056 * 120.20932 * 180.02562 * 15 14 13 17 17 C 1.37806 * 119.88064 * 180.02562 * 16 15 14 18 18 Cl 1.73601 * 119.84409 * 179.72506 * 17 16 15 19 19 C 1.38710 * 120.31653 * 359.97438 * 17 16 15 20 20 C 1.38224 * 120.42830 * 0.02562 * 19 17 16 21 21 Cl 1.73604 * 119.94462 * 179.97438 * 20 19 17 22 22 C 1.38685 * 120.11130 * 359.97438 * 20 19 17 23 23 O 1.35722 * 120.15565 * 180.02562 * 22 20 19 24 24 C 1.40440 * 120.15483 * 0.26537 * 12 11 10 25 25 C 1.36023 * 120.07335 * 359.45006 * 24 12 11 26 26 H 0.96994 * 120.00244 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.04641 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.96154 * 179.97438 * 11 10 9 29 29 H 1.07994 * 120.00108 * 0.02562 * 14 13 12 30 30 H 1.08000 * 120.06092 * 0.02562 * 16 15 14 31 31 H 1.08004 * 119.78632 * 179.97438 * 19 17 16 32 32 H 0.96704 * 113.99810 * 269.97645 * 23 22 20 33 33 H 1.08002 * 119.96408 * 179.72827 * 24 12 11 34 34 H 1.08004 * 120.03809 * 180.25104 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.7019 1.3464 -0.0006 5 1 1.8832 2.3964 -1.2125 6 1 1.8832 2.3964 1.2124 7 6 2.0082 -1.2127 0.0005 8 1 3.0484 -1.2355 0.2897 9 6 1.3560 -2.4022 -0.3758 10 6 0.2293 -2.3530 -1.2235 11 6 -0.3987 -3.5042 -1.5848 12 6 0.0727 -4.7406 -1.1145 13 7 -0.5578 -5.8894 -1.4771 14 6 0.1416 -6.9270 -1.8587 15 6 -0.5390 -8.1671 -2.2496 16 6 0.2055 -9.2808 -2.6583 17 6 -0.4406 -10.4417 -3.0244 18 17 0.4828 -11.8192 -3.5377 19 6 -1.8254 -10.5131 -2.9897 20 6 -2.5728 -9.4218 -2.5884 21 17 -4.3054 -9.5249 -2.5502 22 6 -1.9410 -8.2447 -2.2162 23 8 -2.6740 -7.1728 -1.8215 24 6 1.1903 -4.7929 -0.2655 25 6 1.8266 -3.6460 0.0950 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1346 -1.4024 -1.5846 28 1 -1.2615 -3.4673 -2.2334 29 1 1.2198 -6.8713 -1.8853 30 1 1.2839 -9.2299 -2.6866 31 1 -2.3229 -11.4271 -3.2788 32 1 -2.9217 -6.5785 -2.5431 33 1 1.5476 -5.7451 0.0978 34 1 2.6885 -3.6872 0.7446 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000067102.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:52 Heat of formation + Delta-G solvation = 10.844958 kcal Electronic energy + Delta-G solvation = -22000.527506 eV Core-core repulsion = 18336.170339 eV Total energy + Delta-G solvation = -3664.357167 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 335.022 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.93315 -38.18692 -37.20973 -36.66349 -36.01464 -35.45245 -33.52394 -31.41464 -29.92921 -29.65768 -28.79665 -25.77669 -23.69227 -22.75377 -21.71055 -20.85308 -19.59771 -18.19371 -17.62636 -16.91599 -16.64851 -15.60792 -15.45652 -15.16529 -14.65533 -14.23379 -14.10166 -13.61249 -13.56981 -13.02978 -12.69383 -12.58161 -12.33965 -12.31472 -12.25733 -11.84385 -11.45082 -11.34260 -11.28612 -11.20512 -11.09536 -10.79355 -10.50828 -10.45142 -10.08801 -9.77498 -9.43957 -9.00148 -8.68664 -8.42756 -7.82844 -7.22734 -7.05551 -4.56232 0.55986 0.83809 1.68298 2.03779 2.15329 2.76095 2.90194 2.92645 2.95981 3.12498 3.65156 3.69496 4.12605 4.38654 4.52205 4.79455 4.95028 5.06286 5.33085 5.45402 5.66388 5.68429 5.85747 5.98687 6.11907 6.15155 6.24796 6.54403 6.71196 6.73665 6.95921 7.03903 7.33987 7.53789 7.71299 7.78815 7.79723 7.96823 8.30603 8.53363 8.56624 8.89185 9.80595 Molecular weight = 335.02amu Principal moments of inertia in cm(-1) A = 0.020843 B = 0.002335 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.029391 B =11990.826358 C =13139.977499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.071 3.929 3 Si 0.915 3.085 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.433 4.433 8 H 0.086 0.914 9 C 0.117 3.883 10 C -0.168 4.168 11 C -0.054 4.054 12 C -0.091 4.091 13 N -0.382 5.382 14 C 0.066 3.934 15 C -0.030 4.030 16 C -0.085 4.085 17 C -0.035 4.035 18 Cl -0.065 7.065 19 C -0.099 4.099 20 C -0.057 4.057 21 Cl -0.053 7.053 22 C 0.149 3.851 23 O -0.455 6.455 24 C -0.085 4.085 25 C -0.223 4.223 26 H 0.288 0.712 27 H 0.123 0.877 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.393 0.607 33 H 0.091 0.909 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.270 -14.247 -7.046 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.151 4.151 3 Si 0.738 3.262 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.104 0.896 9 C 0.114 3.886 10 C -0.188 4.188 11 C -0.074 4.074 12 C -0.196 4.196 13 N -0.087 5.087 14 C -0.132 4.132 15 C -0.032 4.032 16 C -0.106 4.106 17 C -0.062 4.062 18 Cl -0.036 7.036 19 C -0.120 4.120 20 C -0.085 4.085 21 Cl -0.024 7.024 22 C 0.100 3.900 23 O -0.265 6.265 24 C -0.105 4.105 25 C -0.243 4.243 26 H 0.099 0.901 27 H 0.141 0.859 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.252 0.748 33 H 0.109 0.891 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.368 -14.072 -6.355 15.804 hybrid contribution 1.022 0.742 -0.205 1.280 sum -2.346 -13.330 -6.559 15.041 Atomic orbital electron populations 1.69812 1.07888 1.30163 1.31183 1.26119 0.94860 1.02036 0.92055 0.86141 0.81035 0.80067 0.78972 1.18034 1.19289 1.19583 1.19802 0.98471 0.91286 1.36539 0.89616 1.17781 0.90892 0.92123 0.87792 1.20969 0.99697 0.96894 1.01271 1.20283 0.97601 0.90788 0.98730 1.18167 0.99724 0.90245 1.11462 1.68335 1.39198 0.98787 1.02379 1.23576 0.95350 0.92350 1.01891 1.19151 0.91452 0.93702 0.98895 1.21122 1.00853 0.90127 0.98484 1.20441 0.91268 0.89809 1.04676 1.98373 1.73403 1.42361 1.89430 1.20746 0.91593 0.98423 1.01226 1.21172 0.85611 0.95970 1.05733 1.98373 1.08680 1.98267 1.97085 1.18432 0.88960 0.87550 0.95102 1.84813 1.70880 1.34665 1.36152 1.20852 0.93532 0.97146 0.98998 1.20604 1.03809 0.92825 1.07054 0.90110 0.85949 0.88513 0.88225 0.83780 0.83979 0.74831 0.89089 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.25 10.96 55.55 0.61 -17.64 16 2 C 0.07 1.62 5.12 -17.32 -0.09 1.53 16 3 Si 0.91 16.93 29.60 -169.99 -5.03 11.90 16 4 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 5 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 6 H -0.27 -4.96 7.11 56.52 0.40 -4.55 16 7 C -0.43 -10.55 9.02 -37.95 -0.34 -10.89 16 8 H 0.09 1.98 7.91 -52.49 -0.42 1.57 16 9 C 0.12 2.93 5.57 -106.78 -0.60 2.34 16 10 C -0.17 -4.12 8.62 -39.30 -0.34 -4.46 16 11 C -0.05 -1.25 9.93 -39.55 -0.39 -1.64 16 12 C -0.09 -2.02 6.19 -84.38 -0.52 -2.54 16 13 N -0.38 -7.53 8.23 -8.88 -0.07 -7.60 16 14 C 0.07 1.10 9.83 -14.54 -0.14 0.95 16 15 C -0.03 -0.42 5.88 -104.94 -0.62 -1.04 16 16 C -0.08 -0.99 9.57 -39.06 -0.37 -1.36 16 17 C -0.03 -0.38 6.31 -39.57 -0.25 -0.63 16 18 Cl -0.06 -0.62 28.94 -51.86 -1.50 -2.12 16 19 C -0.10 -1.08 9.59 -39.41 -0.38 -1.46 16 20 C -0.06 -0.70 6.33 -39.42 -0.25 -0.95 16 21 Cl -0.05 -0.61 28.50 -51.86 -1.48 -2.09 16 22 C 0.15 2.10 6.72 -38.58 -0.26 1.84 16 23 O -0.45 -6.88 10.82 -18.87 -0.20 -7.09 16 24 C -0.09 -1.88 9.10 -39.55 -0.36 -2.24 16 25 C -0.22 -5.20 9.72 -39.30 -0.38 -5.58 16 26 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 27 H 0.12 3.04 6.16 -52.49 -0.32 2.72 16 28 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 29 H 0.10 1.58 7.52 -52.49 -0.39 1.19 16 30 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 32 H 0.39 4.81 9.06 45.56 0.41 5.22 16 33 H 0.09 1.82 7.67 -52.49 -0.40 1.42 16 34 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 334.72 15.07 5.04 5.04 Total: -1.00 -26.18 334.72 -9.87 -36.05 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -1.95 Total: 9.69 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -5.29 Total: -26.13 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.54 Total: -25.25 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.20 Total: -7.09 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -2.98 Total: -4.21 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.18 -9.87 -36.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000067102.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.898 kcal (2) G-P(sol) polarization free energy of solvation -26.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds