Wall clock time and date at job start Tue Mar 31 2020 05:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30798 * 1 3 3 Si 1.86796 * 119.99872 * 2 1 4 4 H 1.48500 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47142 * 299.99948 * 3 2 1 6 6 H 1.48492 * 109.47322 * 59.99896 * 3 2 1 7 7 C 1.40034 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00002 * 198.00997 * 7 2 1 9 9 C 1.40782 * 119.99750 * 18.00652 * 7 2 1 10 10 C 1.41078 * 120.07427 * 24.80732 * 9 7 2 11 11 C 1.36024 * 119.91876 * 180.02562 * 10 9 7 12 12 C 1.40432 * 120.07914 * 0.02562 * 11 10 9 13 13 N 1.35968 * 119.92507 * 179.97438 * 12 11 10 14 14 C 1.30821 * 119.99972 * 134.99481 * 13 12 11 15 15 C 1.46761 * 119.99836 * 179.97438 * 14 13 12 16 16 C 1.40056 * 120.20932 * 180.02562 * 15 14 13 17 17 C 1.37806 * 119.88064 * 180.02562 * 16 15 14 18 18 Cl 1.73601 * 119.84409 * 179.72506 * 17 16 15 19 19 C 1.38710 * 120.31653 * 359.97438 * 17 16 15 20 20 C 1.38224 * 120.42830 * 0.02562 * 19 17 16 21 21 Cl 1.73604 * 119.94462 * 179.97438 * 20 19 17 22 22 C 1.38685 * 120.11130 * 359.97438 * 20 19 17 23 23 O 1.35722 * 120.15565 * 180.02562 * 22 20 19 24 24 C 1.40440 * 120.15483 * 0.26537 * 12 11 10 25 25 C 1.36023 * 120.07335 * 359.45006 * 24 12 11 26 26 H 0.96994 * 120.00244 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.04641 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.96154 * 179.97438 * 11 10 9 29 29 H 1.07994 * 120.00108 * 0.02562 * 14 13 12 30 30 H 1.08000 * 120.06092 * 0.02562 * 16 15 14 31 31 H 1.08004 * 119.78632 * 179.97438 * 19 17 16 32 32 H 0.96704 * 113.99810 * 269.97645 * 23 22 20 33 33 H 1.08002 * 119.96408 * 179.72827 * 24 12 11 34 34 H 1.08004 * 120.03809 * 180.25104 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.7019 1.3464 -0.0006 5 1 1.8832 2.3964 -1.2125 6 1 1.8832 2.3964 1.2124 7 6 2.0082 -1.2127 0.0005 8 1 3.0484 -1.2355 0.2897 9 6 1.3560 -2.4022 -0.3758 10 6 0.2293 -2.3530 -1.2235 11 6 -0.3987 -3.5042 -1.5848 12 6 0.0727 -4.7406 -1.1145 13 7 -0.5578 -5.8894 -1.4771 14 6 0.1416 -6.9270 -1.8587 15 6 -0.5390 -8.1671 -2.2496 16 6 0.2055 -9.2808 -2.6583 17 6 -0.4406 -10.4417 -3.0244 18 17 0.4828 -11.8192 -3.5377 19 6 -1.8254 -10.5131 -2.9897 20 6 -2.5728 -9.4218 -2.5884 21 17 -4.3054 -9.5249 -2.5502 22 6 -1.9410 -8.2447 -2.2162 23 8 -2.6740 -7.1728 -1.8215 24 6 1.1903 -4.7929 -0.2655 25 6 1.8266 -3.6460 0.0950 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1346 -1.4024 -1.5846 28 1 -1.2615 -3.4673 -2.2334 29 1 1.2198 -6.8713 -1.8853 30 1 1.2839 -9.2299 -2.6866 31 1 -2.3229 -11.4271 -3.2788 32 1 -2.9217 -6.5785 -2.5431 33 1 1.5476 -5.7451 0.0978 34 1 2.6885 -3.6872 0.7446 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000067102.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:51 Heat of formation + Delta-G solvation = -1.797470 kcal Electronic energy + Delta-G solvation = -22001.075723 eV Core-core repulsion = 18336.170339 eV Total energy + Delta-G solvation = -3664.905384 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 335.022 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.00874 -39.84927 -38.16968 -37.66949 -37.12644 -36.83582 -35.13336 -32.65064 -31.60295 -30.90626 -30.25203 -27.29604 -25.09765 -23.76823 -23.24805 -22.49030 -21.04082 -19.40271 -19.25488 -18.13348 -17.80508 -17.16050 -16.53491 -16.48220 -15.81343 -15.72301 -15.56788 -14.98229 -14.67067 -14.57613 -14.04259 -13.93803 -13.74769 -13.52318 -13.41173 -13.23230 -12.98139 -12.81044 -12.55665 -12.36024 -12.23242 -11.95977 -11.81950 -11.73807 -11.64825 -11.37425 -10.99326 -10.46474 -9.81619 -9.60907 -9.56650 -8.90116 -8.71983 -6.34901 -0.55072 -0.13534 0.58258 0.77647 1.09279 1.23395 1.33862 1.39020 1.53922 1.73919 2.16039 2.41761 2.72472 3.10045 3.30023 3.64914 3.84916 3.91244 3.97184 4.27429 4.28855 4.36775 4.47802 4.69853 4.85045 4.91075 5.01092 5.01376 5.11148 5.22686 5.26036 5.38463 5.58856 5.82034 5.94862 6.01049 6.21786 6.54052 6.76576 6.78452 6.84410 7.32169 8.18467 Molecular weight = 335.02amu Principal moments of inertia in cm(-1) A = 0.020843 B = 0.002335 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.029391 B =11990.826358 C =13139.977499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.033 3.967 3 Si 0.987 3.013 4 H -0.255 1.255 5 H -0.262 1.262 6 H -0.265 1.265 7 C -0.476 4.476 8 H 0.085 0.915 9 C 0.086 3.914 10 C -0.185 4.185 11 C -0.070 4.070 12 C -0.080 4.080 13 N -0.423 5.423 14 C 0.117 3.883 15 C -0.064 4.064 16 C -0.063 4.063 17 C -0.039 4.039 18 Cl -0.046 7.046 19 C -0.077 4.077 20 C -0.067 4.067 21 Cl -0.047 7.047 22 C 0.147 3.853 23 O -0.474 6.474 24 C -0.097 4.097 25 C -0.235 4.235 26 H 0.294 0.706 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.402 0.598 33 H 0.113 0.887 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.980 -17.330 -8.115 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.184 4.184 3 Si 0.807 3.193 4 H -0.178 1.178 5 H -0.187 1.187 6 H -0.189 1.189 7 C -0.504 4.504 8 H 0.103 0.897 9 C 0.083 3.917 10 C -0.205 4.205 11 C -0.090 4.090 12 C -0.183 4.183 13 N -0.127 5.127 14 C -0.084 4.084 15 C -0.066 4.066 16 C -0.084 4.084 17 C -0.066 4.066 18 Cl -0.017 7.017 19 C -0.097 4.097 20 C -0.095 4.095 21 Cl -0.018 7.018 22 C 0.098 3.902 23 O -0.286 6.286 24 C -0.117 4.117 25 C -0.255 4.255 26 H 0.105 0.895 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.184 0.816 31 H 0.184 0.816 32 H 0.262 0.738 33 H 0.131 0.869 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.083 -17.139 -7.419 18.928 hybrid contribution 0.775 1.014 -0.101 1.280 sum -2.308 -16.124 -7.520 17.941 Atomic orbital electron populations 1.69855 1.09292 1.31302 1.32815 1.26931 0.95507 1.04978 0.90988 0.85071 0.79506 0.75563 0.79131 1.17800 1.18657 1.18939 1.19962 0.98755 0.92330 1.39316 0.89708 1.18078 0.91673 0.93199 0.88760 1.20928 1.00432 0.96953 1.02141 1.20440 0.98140 0.91056 0.99325 1.18351 0.98915 0.91047 1.09997 1.68407 1.38961 0.98942 1.06426 1.24110 0.96257 0.91563 0.96430 1.19069 0.91698 0.93671 1.02126 1.21334 1.01866 0.89273 0.95881 1.20489 0.91475 0.90243 1.04411 1.98393 1.72930 1.41203 1.89157 1.21075 0.91681 0.98513 0.98399 1.21183 0.86173 0.95840 1.06299 1.98381 1.08130 1.98217 1.97082 1.18640 0.89121 0.87804 0.94650 1.84777 1.71175 1.35372 1.37228 1.21063 0.93843 0.97638 0.99194 1.20782 1.04458 0.92927 1.07338 0.89484 0.87352 0.87492 0.86883 0.81578 0.81633 0.73788 0.86922 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.52 10.96 21.84 0.24 -40.28 16 2 C 0.03 1.60 5.12 85.28 0.44 2.04 16 3 Si 0.99 35.84 29.60 68.60 2.03 37.88 16 4 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 5 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 6 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 7 C -0.48 -24.46 9.02 23.33 0.21 -24.25 16 8 H 0.08 4.15 7.91 -2.91 -0.02 4.13 16 9 C 0.09 4.52 5.57 -21.26 -0.12 4.40 16 10 C -0.18 -9.57 8.62 22.45 0.19 -9.38 16 11 C -0.07 -3.33 9.93 22.29 0.22 -3.11 16 12 C -0.08 -3.59 6.19 39.57 0.24 -3.35 16 13 N -0.42 -16.27 8.23 -181.99 -1.50 -17.76 16 14 C 0.12 3.63 9.83 87.07 0.86 4.48 16 15 C -0.06 -1.61 5.88 -20.07 -0.12 -1.73 16 16 C -0.06 -1.21 9.57 22.61 0.22 -0.99 16 17 C -0.04 -0.68 6.31 22.28 0.14 -0.54 16 18 Cl -0.05 -0.69 28.94 -2.72 -0.08 -0.77 16 19 C -0.08 -1.35 9.59 22.38 0.21 -1.13 16 20 C -0.07 -1.46 6.33 22.37 0.14 -1.32 16 21 Cl -0.05 -0.98 28.50 -2.72 -0.08 -1.06 16 22 C 0.15 3.80 6.72 22.92 0.15 3.96 16 23 O -0.47 -13.79 10.82 -90.45 -0.98 -14.77 16 24 C -0.10 -4.32 9.10 22.29 0.20 -4.12 16 25 C -0.23 -11.34 9.72 22.45 0.22 -11.12 16 26 H 0.29 13.15 8.29 -92.71 -0.77 12.38 16 27 H 0.11 5.79 6.16 -2.91 -0.02 5.77 16 28 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 29 H 0.11 3.23 7.52 -2.91 -0.02 3.20 16 30 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.40 9.62 9.06 -74.05 -0.67 8.95 16 33 H 0.11 4.37 7.67 -2.91 -0.02 4.35 16 34 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -58.86 334.72 3.35 -55.50 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 0.50 Total: 27.43 kcal Atomic # 6 Polarization: -49.38 SS G_CDS: 3.22 Total: -46.17 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -1.26 Total: -58.05 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.98 Total: -14.77 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.88 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.16 Total: -1.83 kcal Total: -58.86 3.35 -55.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000067102.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.706 kcal (2) G-P(sol) polarization free energy of solvation -58.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds