Wall clock time and date at job start Tue Mar 31 2020 06:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36002 * 117.00366 * 2 1 4 4 C 1.38099 * 119.99463 * 359.97438 * 3 2 1 5 5 C 1.39828 * 119.84315 * 180.02562 * 4 3 2 6 6 C 1.47437 * 120.07883 * 180.02562 * 5 4 3 7 7 O 1.21517 * 119.99526 * 240.36740 * 6 5 4 8 8 N 1.34769 * 120.00194 * 60.09273 * 6 5 4 9 9 C 1.33307 * 120.00280 * 185.12350 * 8 6 5 10 10 H 1.08002 * 119.99250 * 327.12914 * 9 8 6 11 11 C 1.46788 * 120.00289 * 147.13947 * 9 8 6 12 12 N 1.29314 * 119.99818 * 159.42638 * 11 9 8 13 13 Si 1.86799 * 119.99701 * 339.42058 * 11 9 8 14 14 H 1.48504 * 109.46800 * 92.37609 * 13 11 9 15 15 H 1.48499 * 109.46732 * 212.37360 * 13 11 9 16 16 H 1.48497 * 109.47516 * 332.37512 * 13 11 9 17 17 C 1.46508 * 119.99900 * 5.11422 * 8 6 5 18 18 C 1.47206 * 109.46778 * 85.33632 * 17 8 6 19 19 N 6.28038 * 95.75524 * 38.50498 * 2 1 3 20 20 C 1.39822 * 119.84392 * 0.27305 * 5 4 3 21 21 N 1.48019 * 120.00263 * 179.70626 * 20 5 4 22 22 O 1.31700 * 120.00088 * 184.96496 * 21 20 5 23 23 O 1.31706 * 119.99621 * 4.96060 * 21 20 5 24 24 C 1.37736 * 119.99645 * 359.41972 * 20 5 4 25 25 C 1.38885 * 120.15365 * 0.58628 * 24 20 5 26 26 O 1.35773 * 119.92288 * 179.74062 * 25 24 20 27 27 C 1.42907 * 116.99675 * 359.97270 * 26 25 24 28 28 H 1.08997 * 109.46888 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47131 * 300.00183 * 1 2 3 30 30 H 1.09007 * 109.46678 * 60.00061 * 1 2 3 31 31 H 1.07997 * 120.07911 * 359.97202 * 4 3 2 32 32 H 0.97005 * 119.99733 * 179.97438 * 12 11 9 33 33 H 1.08993 * 109.46952 * 205.33603 * 17 8 6 34 34 H 1.08997 * 109.47068 * 325.34041 * 17 8 6 35 35 H 1.07998 * 119.92577 * 180.29698 * 24 20 5 36 36 H 1.08995 * 109.47258 * 60.00430 * 27 26 25 37 37 H 1.09003 * 109.46928 * 180.02562 * 27 26 25 38 38 H 1.08998 * 109.47373 * 300.00243 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2943 2.3699 -0.0005 5 6 1.9325 3.6141 -0.0011 6 6 1.1346 4.8539 -0.0011 7 8 1.2430 5.6461 -0.9161 8 7 0.2809 5.1058 1.0109 9 6 -0.5145 6.1744 0.9615 10 1 -0.1758 7.0776 0.4758 11 6 -1.8506 6.1236 1.5675 12 7 -2.4606 7.2199 1.8806 13 14 -2.6694 4.4751 1.8860 14 1 -2.3538 4.0240 3.2653 15 1 -4.1400 4.6157 1.7355 16 1 -2.1653 3.4752 0.9107 17 6 0.2269 4.2052 2.1652 18 6 1.2616 4.5921 3.1382 19 7 2.0588 4.8900 3.8903 20 6 3.3292 3.6797 -0.0069 21 7 4.0083 4.9948 -0.0140 22 8 5.3197 5.0582 -0.1182 23 8 3.3012 6.1016 0.0837 24 6 4.0730 2.5205 0.0001 25 6 3.4391 1.2847 0.0005 26 8 4.1769 0.1450 0.0021 27 6 5.5984 0.2924 0.0025 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 0.2158 2.3149 -0.0014 32 1 -3.3437 7.1863 2.2807 33 1 -0.7552 4.2726 2.6330 34 1 0.4029 3.1812 1.8356 35 1 5.1517 2.5725 0.0005 36 1 5.9064 0.8419 0.8921 37 1 6.0658 -0.6923 0.0033 38 1 5.9072 0.8401 -0.8878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000263434.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:33 Heat of formation + Delta-G solvation = 22.424632 kcal Electronic energy + Delta-G solvation = -29975.653468 eV Core-core repulsion = 25598.505950 eV Total energy + Delta-G solvation = -4377.147518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.104 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.35114 -39.55997 -39.00496 -38.38881 -36.66166 -36.27544 -34.87358 -33.84919 -32.73619 -31.30797 -31.03233 -28.20020 -28.07679 -27.64701 -26.42466 -24.93200 -22.97781 -22.23400 -20.25351 -19.05281 -18.83562 -18.08631 -18.01126 -17.11295 -16.91842 -16.63920 -16.59638 -16.06256 -15.78073 -15.65737 -15.40787 -14.98798 -14.57948 -14.19757 -14.06069 -13.66645 -13.42833 -13.11331 -13.02798 -12.79158 -12.70556 -12.44369 -12.16081 -12.00981 -11.91561 -11.70257 -11.60636 -11.41123 -11.22368 -10.85361 -10.66719 -10.50634 -10.23639 -10.11047 -9.54439 -9.36952 -8.95603 -8.44496 -8.38073 -6.87717 -4.06544 -0.46476 0.58348 1.19708 1.46845 2.62209 2.68329 2.75230 2.78353 2.83541 2.86221 2.94642 3.12309 3.42513 3.68836 3.92660 4.17992 4.24960 4.38552 4.45891 4.65424 4.72836 4.76163 4.85390 4.86102 4.89773 4.99939 5.09267 5.17979 5.20406 5.22327 5.36128 5.46500 5.61763 5.78700 6.19921 6.48660 6.85159 6.96725 7.21301 7.80830 7.88995 8.13047 8.54081 8.93341 9.44569 10.19319 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.011941 B = 0.005615 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.305638 B = 4985.112590 C = 6292.529479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.292 6.292 3 C 0.156 3.844 4 C -0.167 4.167 5 C -0.025 4.025 6 C 0.483 3.517 7 O -0.512 6.512 8 N -0.408 5.408 9 C -0.349 4.349 10 H 0.122 0.878 11 C 0.068 3.932 12 N -0.800 5.800 13 Si 0.863 3.137 14 H -0.263 1.263 15 H -0.273 1.273 16 H -0.252 1.252 17 C 0.162 3.838 18 C 0.199 3.801 19 N -0.427 5.427 20 C 0.024 3.976 21 N -0.023 5.023 22 O -0.220 6.220 23 O -0.101 6.101 24 C -0.118 4.118 25 C 0.105 3.895 26 O -0.294 6.294 27 C 0.019 3.981 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.167 0.833 32 H 0.288 0.712 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.166 0.834 36 H 0.060 0.940 37 H 0.107 0.893 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.533 -19.066 -1.718 19.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.204 6.204 3 C 0.109 3.891 4 C -0.187 4.187 5 C -0.031 4.031 6 C 0.272 3.728 7 O -0.391 6.391 8 N -0.127 5.127 9 C -0.478 4.478 10 H 0.139 0.861 11 C -0.149 4.149 12 N -0.429 5.429 13 Si 0.688 3.312 14 H -0.190 1.190 15 H -0.199 1.199 16 H -0.175 1.175 17 C 0.036 3.964 18 C -0.121 4.121 19 N -0.106 5.106 20 C -0.065 4.065 21 N 0.453 4.547 22 O -0.398 6.398 23 O -0.307 6.307 24 C -0.138 4.138 25 C 0.058 3.942 26 O -0.207 6.207 27 C -0.076 4.076 28 H 0.128 0.872 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.184 0.816 32 H 0.101 0.899 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.184 0.816 36 H 0.079 0.921 37 H 0.125 0.875 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.447 -19.090 -1.029 19.628 hybrid contribution -0.630 -0.117 0.084 0.646 sum 3.818 -19.207 -0.945 19.605 Atomic orbital electron populations 1.23345 0.77225 1.05024 1.02485 1.86224 1.22132 1.24643 1.87378 1.18340 0.89036 0.85570 0.96185 1.21268 1.01464 0.88889 1.07090 1.20187 0.91025 0.96787 0.95087 1.17336 0.84950 0.86098 0.84441 1.90737 1.66076 1.46408 1.35849 1.42246 1.34857 1.24227 1.11418 1.20110 0.93354 0.92951 1.41339 0.86052 1.27020 0.95854 0.97051 0.94981 1.68686 1.14326 1.29265 1.30644 0.87207 0.80282 0.84644 0.79045 1.19020 1.19891 1.17539 1.19906 0.94835 0.95966 0.85682 1.29824 0.94496 0.93629 0.94110 1.81057 1.10860 1.07973 1.10712 1.19795 0.90901 0.81581 1.14196 1.50181 1.02698 1.03974 0.97818 1.96188 0.89646 1.95844 1.58089 1.96452 1.63367 1.19881 1.50976 1.20722 1.02124 0.88806 1.02112 1.17874 0.88232 0.85455 1.02664 1.86168 1.19338 1.26572 1.88610 1.23244 0.77750 1.04593 1.02037 0.87228 0.91733 0.91583 0.81614 0.89899 0.86862 0.87649 0.81635 0.92097 0.87451 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 101.05 0.99 1.09 16 2 O -0.29 -3.15 10.28 -34.40 -0.35 -3.50 16 3 C 0.16 1.96 6.69 -39.18 -0.26 1.70 16 4 C -0.17 -2.31 6.66 -39.04 -0.26 -2.57 16 5 C -0.02 -0.45 4.81 -104.96 -0.50 -0.96 16 6 C 0.48 10.86 5.32 -12.52 -0.07 10.79 16 7 O -0.51 -13.52 14.72 -18.47 -0.27 -13.79 16 8 N -0.41 -9.08 2.22 -117.59 -0.26 -9.34 16 9 C -0.35 -8.88 9.73 -13.46 -0.13 -9.01 16 10 H 0.12 3.59 7.71 -52.49 -0.40 3.19 16 11 C 0.07 1.61 5.51 -15.16 -0.08 1.53 16 12 N -0.80 -20.00 13.88 56.00 0.78 -19.23 16 13 Si 0.86 15.84 24.98 -169.99 -4.25 11.60 16 14 H -0.26 -4.40 6.66 56.52 0.38 -4.03 16 15 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 16 H -0.25 -4.07 7.11 56.52 0.40 -3.67 16 17 C 0.16 2.95 4.35 -6.82 -0.03 2.92 16 18 C 0.20 3.98 15.71 -20.76 -0.33 3.65 16 19 N -0.43 -9.19 18.54 42.15 0.78 -8.41 16 20 C 0.02 0.43 6.90 -79.54 -0.55 -0.12 16 21 N -0.02 -0.49 4.98 34.16 0.17 -0.32 16 22 O -0.22 -4.59 19.16 -31.57 -0.60 -5.20 16 23 O -0.10 -2.56 15.71 -39.76 -0.62 -3.18 16 24 C -0.12 -1.67 8.55 -39.53 -0.34 -2.01 16 25 C 0.10 1.34 6.71 -38.89 -0.26 1.08 16 26 O -0.29 -3.29 10.26 -33.68 -0.35 -3.63 16 27 C 0.02 0.14 9.81 101.05 0.99 1.13 16 28 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 30 H 0.07 0.44 7.66 -51.93 -0.40 0.04 16 31 H 0.17 1.91 5.94 -52.49 -0.31 1.60 16 32 H 0.29 6.47 8.26 -40.82 -0.34 6.13 16 33 H 0.11 2.01 2.72 -51.93 -0.14 1.87 16 34 H 0.11 1.49 4.97 -51.93 -0.26 1.23 16 35 H 0.17 2.02 5.79 -52.49 -0.30 1.72 16 36 H 0.06 0.42 7.65 -51.93 -0.40 0.03 16 37 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 LS Contribution 338.46 15.07 5.10 5.10 Total: -1.00 -33.27 338.46 -3.72 -36.99 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -3.01 Total: 3.68 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -0.83 Total: 9.23 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 1.47 Total: -37.30 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -2.20 Total: -29.30 kcal Atomic # 14 Polarization: 15.84 SS G_CDS: -4.25 Total: 11.60 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.27 -3.72 -36.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000263434.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.417 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds