Wall clock time and date at job start Tue Mar 31 2020 05:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35997 * 116.99966 * 2 1 4 4 C 1.38569 * 120.07439 * 359.97438 * 3 2 1 5 5 C 1.38243 * 119.99986 * 179.97438 * 4 3 2 6 6 C 1.38246 * 120.14508 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.92546 * 179.97438 * 6 5 4 8 8 C 1.53001 * 110.01526 * 5.61390 * 7 6 5 9 9 N 1.46504 * 109.47251 * 64.22203 * 8 7 6 10 10 C 1.34767 * 120.00151 * 175.04207 * 9 8 7 11 11 O 1.21695 * 120.00115 * 359.97438 * 10 9 8 12 12 C 1.46377 * 120.00174 * 179.97438 * 10 9 8 13 13 H 1.08000 * 120.00086 * 359.97438 * 12 10 9 14 14 C 1.40047 * 120.00008 * 179.97438 * 12 10 9 15 15 N 1.30676 * 120.00299 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99879 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47151 * 60.00675 * 16 14 12 18 18 H 1.48505 * 109.46931 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47367 * 300.00124 * 16 14 12 20 20 C 1.53874 * 110.07139 * 127.02899 * 7 6 5 21 21 C 1.54266 * 106.59866 * 119.30997 * 20 7 6 22 22 C 1.54893 * 104.19629 * 23.60776 * 21 20 7 23 23 C 1.54264 * 110.03588 * 244.22014 * 7 6 5 24 24 C 1.38237 * 120.15107 * 0.23514 * 6 5 4 25 25 C 1.38574 * 119.99813 * 359.48676 * 24 6 5 26 26 O 1.35992 * 120.07653 * 180.25691 * 25 24 6 27 27 C 1.42904 * 116.99692 * 0.27708 * 26 25 24 28 28 H 1.08995 * 109.46947 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46828 * 300.00548 * 1 2 3 30 30 H 1.09002 * 109.46553 * 60.00094 * 1 2 3 31 31 H 1.08000 * 119.99622 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.92377 * 180.02562 * 5 4 3 33 33 H 1.08994 * 109.46885 * 304.22108 * 8 7 6 34 34 H 1.08996 * 109.46852 * 184.21770 * 8 7 6 35 35 H 0.97003 * 119.99931 * 355.03434 * 9 8 7 36 36 H 0.96993 * 120.00384 * 179.97438 * 15 14 12 37 37 H 1.09007 * 110.03231 * 238.59358 * 20 7 6 38 38 H 1.09000 * 110.03492 * 0.02562 * 20 7 6 39 39 H 1.08998 * 110.48616 * 264.93053 * 21 20 7 40 40 H 1.09004 * 110.48947 * 142.28851 * 21 20 7 41 41 H 1.08993 * 110.75750 * 203.74297 * 22 21 20 42 42 H 1.09006 * 110.91351 * 80.44433 * 22 21 20 43 43 H 1.09000 * 110.48298 * 335.73870 * 23 7 6 44 44 H 1.08997 * 110.48472 * 98.24331 * 23 7 6 45 45 H 1.08009 * 120.00411 * 179.74666 * 24 6 5 46 46 H 1.09000 * 109.47362 * 299.99879 * 27 26 25 47 47 H 1.08998 * 109.47260 * 60.00192 * 27 26 25 48 48 H 1.09004 * 109.47017 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3749 -0.0005 5 6 1.9224 3.6058 0.0000 6 6 3.3029 3.6799 0.0005 7 6 3.9837 5.0244 0.0005 8 6 2.9438 6.1379 0.1405 9 7 2.2824 6.0275 1.4431 10 6 1.3955 6.9655 1.8302 11 8 1.1444 7.9045 1.0979 12 6 0.7343 6.8549 3.1314 13 1 0.9568 6.0214 3.7811 14 6 -0.1869 7.8300 3.5338 15 7 -0.4566 8.8383 2.7475 16 14 -1.0313 7.6885 5.1941 17 1 -0.0092 7.6944 6.2714 18 1 -1.9536 8.8375 5.3799 19 1 -1.8028 6.4209 5.2506 20 6 4.9983 5.1026 1.1547 21 6 6.3810 5.3339 0.5111 22 6 6.0586 5.9739 -0.8621 23 6 4.7853 5.2109 -1.3042 24 6 4.0603 2.5234 -0.0044 25 6 3.4360 1.2863 0.0009 26 8 4.1795 0.1477 0.0014 27 6 5.6003 0.3007 0.0024 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 0.2146 2.3197 -0.0005 32 1 1.3342 4.5115 0.0000 33 1 2.2021 6.0441 -0.6527 34 1 3.4368 7.1070 0.0644 35 1 2.4828 5.2792 2.0269 36 1 -1.0949 9.5134 3.0261 37 1 4.7498 5.9339 1.8146 38 1 4.9991 4.1677 1.7152 39 1 6.9028 4.3863 0.3772 40 1 6.9759 6.0153 1.1194 41 1 6.8731 5.8072 -1.5668 42 1 5.8533 7.0392 -0.7562 43 1 5.0493 4.2434 -1.7313 44 1 4.2145 5.8005 -2.0216 45 1 5.1387 2.5841 -0.0081 46 1 5.9072 0.8505 -0.8873 47 1 5.9059 0.8504 0.8926 48 1 6.0716 -0.6822 0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000341169.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:55 Heat of formation + Delta-G solvation = -95.433772 kcal Electronic energy + Delta-G solvation = -29809.496275 eV Core-core repulsion = 25829.756044 eV Total energy + Delta-G solvation = -3979.740231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.79518 -39.27113 -38.38551 -36.86933 -36.18190 -33.27928 -32.28468 -30.83552 -30.17415 -28.91637 -28.41270 -27.28148 -26.76697 -26.19798 -24.09924 -22.10559 -21.77922 -20.69808 -19.61573 -19.14749 -18.24805 -17.31358 -16.69303 -16.47002 -16.04327 -15.74380 -15.29688 -15.24677 -15.05349 -14.75670 -14.40928 -14.18197 -13.94651 -13.66345 -13.19780 -13.14812 -12.68982 -12.64605 -12.40281 -12.15504 -12.07353 -11.64095 -11.47165 -11.39698 -11.20279 -11.19082 -11.06393 -10.98258 -10.95846 -10.92731 -10.57831 -10.43890 -10.38115 -10.33869 -10.23882 -10.09667 -8.82696 -8.54947 -7.65759 -7.58383 -7.41828 -6.16403 -4.61406 1.40073 1.59126 3.16419 3.21473 3.23253 3.27606 3.31984 3.81810 4.12073 4.56632 4.61474 4.68581 4.75566 4.88827 4.97277 5.04873 5.06733 5.09415 5.16836 5.18318 5.26400 5.37406 5.38885 5.46919 5.51482 5.56750 5.57848 5.63101 5.72896 5.77914 5.80977 5.88821 5.98603 6.02070 6.11783 6.16808 6.30789 6.34630 6.45684 6.48604 6.58132 6.71286 6.84142 6.85779 7.07462 7.45369 7.63848 7.96741 8.13563 8.36092 9.04980 9.57556 10.62592 10.81823 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009962 B = 0.004095 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.990951 B = 6835.246155 C = 8722.470746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.090 3.910 4 C -0.169 4.169 5 C -0.101 4.101 6 C -0.062 4.062 7 C -0.030 4.030 8 C 0.145 3.855 9 N -0.764 5.764 10 C 0.555 3.445 11 O -0.582 6.582 12 C -0.545 4.545 13 H 0.065 0.935 14 C 0.089 3.911 15 N -0.769 5.769 16 Si 0.905 3.095 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.269 1.269 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.108 4.108 24 C -0.166 4.166 25 C 0.090 3.910 26 O -0.310 6.310 27 C 0.028 3.972 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.133 0.867 32 H 0.145 0.855 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.381 0.619 36 H 0.268 0.732 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.132 0.868 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.532 -15.308 -6.183 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.045 3.955 4 C -0.187 4.187 5 C -0.119 4.119 6 C -0.062 4.062 7 C -0.030 4.030 8 C 0.020 3.980 9 N -0.420 5.420 10 C 0.359 3.641 11 O -0.465 6.465 12 C -0.582 4.582 13 H 0.084 0.916 14 C -0.130 4.130 15 N -0.398 5.398 16 Si 0.730 3.270 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.193 1.193 20 C -0.153 4.153 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.146 4.146 24 C -0.184 4.184 25 C 0.045 3.955 26 O -0.224 6.224 27 C -0.067 4.067 28 H 0.114 0.886 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.162 0.838 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.213 0.787 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.150 0.850 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.253 -14.816 -6.767 19.247 hybrid contribution -0.423 -0.161 1.169 1.254 sum 9.830 -14.977 -5.598 18.769 Atomic orbital electron populations 1.23035 0.78802 1.03551 1.01462 1.86119 1.20828 1.26239 1.89373 1.18247 0.89067 0.85092 1.03077 1.21122 0.99982 0.91426 1.06200 1.21284 0.94330 0.97904 0.98395 1.19522 0.93142 0.93688 0.99882 1.20409 0.95191 0.91626 0.95782 1.20945 0.92942 0.95881 0.88218 1.46213 1.47958 1.29612 1.18196 1.18177 0.77944 0.80554 0.87438 1.90604 1.65852 1.33724 1.56328 1.20849 1.25384 1.10167 1.01835 0.91640 1.25677 0.95550 0.94194 0.97629 1.70009 1.26553 1.08392 1.34796 0.86487 0.79439 0.78310 0.82813 1.19327 1.20606 1.19344 1.22347 0.93201 1.02678 0.97094 1.22350 0.97031 1.00070 0.96501 1.22504 0.97081 1.00112 0.96506 1.22443 0.95743 1.00402 0.96031 1.20820 1.00038 0.90427 1.07164 1.18129 0.88076 0.85850 1.03408 1.86141 1.18278 1.28515 1.89480 1.23003 0.79166 1.03400 1.01158 0.88559 0.92568 0.92802 0.84901 0.83787 0.93467 0.92643 0.78717 0.92143 0.90236 0.91710 0.92247 0.91756 0.91874 0.91121 0.91448 0.91112 0.85034 0.92947 0.92828 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.44 10.28 -34.23 -0.35 -4.80 16 3 C 0.09 1.35 6.70 -39.12 -0.26 1.09 16 4 C -0.17 -2.48 9.04 -39.46 -0.36 -2.84 16 5 C -0.10 -1.60 8.30 -39.58 -0.33 -1.93 16 6 C -0.06 -0.89 4.35 -104.62 -0.46 -1.35 16 7 C -0.03 -0.42 0.51 -154.54 -0.08 -0.50 16 8 C 0.15 2.70 3.56 -4.04 -0.01 2.68 16 9 N -0.76 -16.48 3.52 -61.72 -0.22 -16.70 16 10 C 0.56 15.45 7.75 -12.99 -0.10 15.35 16 11 O -0.58 -18.57 15.02 5.19 0.08 -18.50 16 12 C -0.55 -15.26 9.54 -35.63 -0.34 -15.60 16 13 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 14 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 15 N -0.77 -22.96 11.83 55.55 0.66 -22.30 16 16 Si 0.90 20.16 29.56 -169.99 -5.02 15.13 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 C -0.12 -1.53 5.14 -25.61 -0.13 -1.66 16 21 C -0.12 -1.32 6.83 -25.07 -0.17 -1.49 16 22 C -0.12 -1.36 6.91 -24.74 -0.17 -1.53 16 23 C -0.11 -1.31 5.83 -25.08 -0.15 -1.45 16 24 C -0.17 -2.18 7.02 -39.46 -0.28 -2.46 16 25 C 0.09 1.30 6.70 -39.12 -0.26 1.04 16 26 O -0.31 -4.21 10.28 -34.22 -0.35 -4.56 16 27 C 0.03 0.25 9.81 101.05 0.99 1.24 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 30 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 31 H 0.13 1.74 6.30 -52.49 -0.33 1.41 16 32 H 0.14 2.60 5.38 -52.49 -0.28 2.32 16 33 H 0.05 0.93 7.00 -51.93 -0.36 0.56 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.38 7.59 7.41 -40.82 -0.30 7.29 16 36 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 37 H 0.08 1.23 7.27 -51.93 -0.38 0.85 16 38 H 0.06 0.83 7.06 -51.93 -0.37 0.46 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.75 7.30 -51.93 -0.38 0.37 16 44 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 45 H 0.13 1.45 6.11 -52.48 -0.32 1.13 16 46 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 47 H 0.05 0.44 7.68 -51.93 -0.40 0.04 16 48 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 380.56 15.07 5.73 5.73 Total: -1.00 -34.81 380.56 -7.91 -42.72 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -7.23 Total: 9.02 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -1.21 Total: -5.77 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.44 Total: -39.00 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.63 Total: -27.85 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.81 -7.91 -42.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000341169.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.712 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds