Wall clock time and date at job start Tue Mar 31 2020 05:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35734 * 117.00169 * 2 1 4 4 C 1.39114 * 119.83471 * 0.02562 * 3 2 1 5 5 C 1.36539 * 120.35678 * 180.02562 * 4 3 2 6 6 I 2.09495 * 119.99340 * 180.02562 * 5 4 3 7 7 C 1.40923 * 120.01284 * 359.97438 * 5 4 3 8 8 C 1.41166 * 120.16347 * 179.97438 * 7 5 4 9 9 H 1.07998 * 119.99946 * 25.96831 * 8 7 5 10 10 C 1.39873 * 120.00158 * 205.95933 * 8 7 5 11 11 N 1.30894 * 119.99840 * 15.30529 * 10 8 7 12 12 Si 1.86794 * 120.00076 * 195.30523 * 10 8 7 13 13 H 1.48499 * 109.47153 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47341 * 119.99933 * 12 10 8 15 15 H 1.48501 * 109.47403 * 240.00106 * 12 10 8 16 16 C 1.40798 * 119.67478 * 0.02562 * 7 5 4 17 17 C 1.37803 * 119.65004 * 359.97438 * 16 7 5 18 18 O 1.35965 * 120.01144 * 179.97438 * 17 16 7 19 19 C 1.42894 * 117.00172 * 0.02562 * 18 17 16 20 20 H 1.09002 * 109.47355 * 299.99753 * 1 2 3 21 21 H 1.09007 * 109.47444 * 60.00000 * 1 2 3 22 22 H 1.09002 * 109.47201 * 179.97438 * 1 2 3 23 23 H 1.07998 * 119.81494 * 0.02562 * 4 3 2 24 24 H 0.97004 * 120.00270 * 184.95751 * 11 10 8 25 25 H 1.07998 * 120.17898 * 179.72219 * 16 7 5 26 26 H 1.08998 * 109.47017 * 59.99767 * 19 18 17 27 27 H 1.08999 * 109.47169 * 179.97438 * 19 18 17 28 28 H 1.09002 * 109.47307 * 299.99538 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2842 2.3739 0.0005 5 6 1.8930 3.5961 0.0000 6 53 0.7359 5.3425 0.0017 7 6 3.2995 3.6829 -0.0005 8 6 3.9323 4.9448 -0.0016 9 1 3.4228 5.8047 0.4075 10 6 5.2192 5.0815 -0.5324 11 7 5.7190 4.1370 -1.2883 12 14 6.2244 6.6118 -0.1624 13 1 5.4387 7.5213 0.7097 14 1 7.4793 6.2242 0.5305 15 1 6.5547 7.3063 -1.4328 16 6 4.0707 2.5049 -0.0011 17 6 3.4420 1.2786 -0.0005 18 8 4.1795 0.1363 -0.0016 19 6 5.6010 0.2818 -0.0027 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 0.2061 2.3108 0.0014 24 1 6.6365 4.1977 -1.5974 25 1 5.1491 2.5619 -0.0060 26 1 5.9108 0.8297 0.8873 27 1 6.0671 -0.7035 -0.0030 28 1 5.9094 0.8303 -0.8927 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000398633.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:50 Heat of formation + Delta-G solvation = -59.853552 kcal Electronic energy + Delta-G solvation = -15187.984946 eV Core-core repulsion = 12449.258641 eV Total energy + Delta-G solvation = -2738.726306 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 333.985 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.00476 -39.07603 -37.96764 -35.23833 -32.16174 -31.14510 -29.07769 -28.13024 -27.87137 -25.98426 -22.70832 -22.05136 -19.69662 -18.56729 -17.60969 -17.13344 -16.72680 -16.53881 -15.93990 -15.25798 -15.10505 -14.75089 -14.05355 -13.70666 -13.37721 -12.97295 -12.84111 -12.73836 -12.39148 -12.14507 -11.96154 -11.81272 -11.65833 -11.31745 -10.99069 -10.42570 -10.23935 -9.28354 -8.80989 -8.47667 -6.34167 0.77921 0.82230 0.87270 1.40914 1.48406 1.54429 2.21049 2.61374 2.64527 2.80589 3.54076 4.20290 4.42835 4.44644 4.48158 4.49189 4.69802 4.75397 4.83960 4.91222 5.03197 5.22995 5.36537 5.48316 5.86955 6.03879 6.34506 6.52132 6.74192 6.85482 7.07273 8.29064 Molecular weight = 333.99amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.010033 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.580317 B = 2790.096195 C = 5260.932239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.337 6.337 3 C -0.033 4.033 4 C -0.101 4.101 5 C -0.208 4.208 6 I -0.062 7.062 7 C 0.114 3.886 8 C -0.472 4.472 9 H 0.093 0.907 10 C 0.044 3.956 11 N -0.817 5.817 12 Si 0.968 3.032 13 H -0.257 1.257 14 H -0.262 1.262 15 H -0.269 1.269 16 C -0.231 4.231 17 C 0.115 3.885 18 O -0.334 6.334 19 C 0.033 3.967 20 H 0.051 0.949 21 H 0.049 0.951 22 H 0.117 0.883 23 H 0.133 0.867 24 H 0.290 0.710 25 H 0.137 0.863 26 H 0.047 0.953 27 H 0.123 0.877 28 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.484 0.367 2.031 5.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.253 6.253 3 C -0.079 4.079 4 C -0.122 4.122 5 C -0.350 4.350 6 I 0.087 6.913 7 C 0.109 3.891 8 C -0.501 4.501 9 H 0.111 0.889 10 C -0.172 4.172 11 N -0.443 5.443 12 Si 0.789 3.211 13 H -0.180 1.180 14 H -0.187 1.187 15 H -0.194 1.194 16 C -0.253 4.253 17 C 0.069 3.931 18 O -0.249 6.249 19 C -0.062 4.062 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.135 0.865 23 H 0.151 0.849 24 H 0.101 0.899 25 H 0.154 0.846 26 H 0.065 0.935 27 H 0.141 0.859 28 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.094 1.170 1.832 6.470 hybrid contribution 1.296 -0.230 -0.049 1.317 sum -4.798 0.939 1.783 5.204 Atomic orbital electron populations 1.23102 0.78267 1.04523 1.00963 1.85915 1.21765 1.26319 1.91309 1.17955 0.88716 0.84776 1.16442 1.20317 0.98763 0.90228 1.02935 1.23635 0.94821 0.93704 1.22822 1.95994 1.64149 1.32076 1.99086 1.17484 0.89853 0.93903 0.87875 1.19944 1.00619 0.95118 1.34420 0.88941 1.26618 0.98522 1.00750 0.91336 1.69865 1.16063 1.34998 1.23361 0.85342 0.78340 0.78194 0.79207 1.18018 1.18699 1.19378 1.21345 1.00598 0.89790 1.13578 1.18531 0.88486 0.85900 1.00159 1.85972 1.19923 1.29473 1.89487 1.23067 0.77936 1.04154 1.01066 0.93011 0.93285 0.86478 0.84921 0.89920 0.84564 0.93456 0.85911 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 9.80 113.37 1.11 1.89 15 2 O -0.34 -14.01 10.26 -76.68 -0.79 -14.79 15 3 C -0.03 -1.52 6.73 22.87 0.15 -1.37 15 4 C -0.10 -4.39 8.65 22.08 0.19 -4.20 15 5 C -0.21 -9.62 6.22 22.53 0.14 -9.48 15 6 I -0.06 -2.36 38.34 -18.82 -0.72 -3.08 15 7 C 0.11 5.79 5.57 -21.28 -0.12 5.68 15 8 C -0.47 -23.50 8.37 23.39 0.20 -23.31 15 9 H 0.09 4.48 6.58 -2.91 -0.02 4.46 15 10 C 0.04 2.06 5.18 85.23 0.44 2.50 15 11 N -0.82 -39.70 10.88 21.82 0.24 -39.46 15 12 Si 0.97 36.32 29.59 68.60 2.03 38.35 15 13 H -0.26 -9.55 7.11 99.48 0.71 -8.85 15 14 H -0.26 -9.39 7.11 99.48 0.71 -8.69 15 15 H -0.27 -9.85 7.11 99.48 0.71 -9.15 15 16 C -0.23 -11.67 7.66 22.79 0.17 -11.50 15 17 C 0.11 5.57 6.70 22.56 0.15 5.72 15 18 O -0.33 -14.90 10.28 -79.26 -0.81 -15.72 15 19 C 0.03 1.15 9.81 113.37 1.11 2.26 15 20 H 0.05 1.42 7.65 -2.39 -0.02 1.40 15 21 H 0.05 1.37 7.65 -2.38 -0.02 1.36 15 22 H 0.12 2.62 8.14 -2.39 -0.02 2.60 15 23 H 0.13 4.99 6.25 -2.91 -0.02 4.97 15 24 H 0.29 12.69 8.30 -92.71 -0.77 11.92 15 25 H 0.14 6.88 4.38 -2.91 -0.01 6.87 15 26 H 0.05 1.64 7.66 -2.39 -0.02 1.62 15 27 H 0.12 3.27 8.14 -2.39 -0.02 3.25 15 28 H 0.05 1.72 7.65 -2.39 -0.02 1.70 15 Total: -1.00 -57.72 267.79 4.69 -53.03 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 1.19 Total: 13.47 kcal Atomic # 6 Polarization: -35.36 SS G_CDS: 3.55 Total: -31.81 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.24 Total: -39.46 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -1.60 Total: -30.51 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Atomic # 53 Polarization: -2.36 SS G_CDS: -0.72 Total: -3.08 kcal Total: -57.72 4.69 -53.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000398633.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.819 kcal (2) G-P(sol) polarization free energy of solvation -57.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds