Wall clock time and date at job start Tue Mar 31 2020 04:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30774 * 1 3 3 Si 1.86799 * 120.00206 * 2 1 4 4 H 1.48507 * 109.46919 * 239.99666 * 3 2 1 5 5 H 1.48498 * 109.47181 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47279 * 119.99658 * 3 2 1 7 7 C 1.39911 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00911 * 180.02562 * 7 2 1 9 9 C 1.39325 * 119.99753 * 0.02562 * 7 2 1 10 10 O 1.22146 * 120.00092 * 359.97438 * 9 7 2 11 11 N 1.34774 * 120.00243 * 179.97438 * 9 7 2 12 12 N 1.40101 * 120.00148 * 179.97438 * 11 9 7 13 13 C 1.31347 * 120.00186 * 180.02562 * 12 11 9 14 14 C 1.41019 * 120.00174 * 180.02562 * 13 12 11 15 15 C 1.47203 * 126.98169 * 0.02562 * 14 13 12 16 16 C 1.39525 * 133.54228 * 359.97347 * 15 14 13 17 17 C 1.37845 * 119.68067 * 180.02562 * 16 15 14 18 18 C 1.38660 * 120.24654 * 0.02562 * 17 16 15 19 19 C 1.38038 * 120.65499 * 359.97438 * 18 17 16 20 20 C 1.38995 * 120.03640 * 0.03628 * 19 18 17 21 21 N 1.38358 * 132.51589 * 179.97438 * 20 19 18 22 22 H 0.97003 * 124.72502 * 0.02562 * 21 20 19 23 23 C 1.36198 * 110.55003 * 180.02562 * 21 20 19 24 24 C 1.46991 * 125.57186 * 180.02562 * 23 21 20 25 25 C 1.40112 * 120.18393 * 224.69787 * 24 23 21 26 26 C 1.37801 * 119.80166 * 179.67583 * 25 24 23 27 27 C 1.38500 * 120.18782 * 0.62137 * 26 25 24 28 28 C 1.38502 * 120.39057 * 359.67570 * 27 26 25 29 29 C 1.37789 * 120.18962 * 359.97438 * 28 27 26 30 30 H 0.97000 * 119.99847 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99973 * 0.02562 * 11 9 7 32 32 H 1.08001 * 119.99694 * 0.02562 * 13 12 11 33 33 H 1.07996 * 120.16242 * 0.05276 * 16 15 14 34 34 H 1.08007 * 119.88053 * 179.72670 * 17 16 15 35 35 H 1.07992 * 119.67080 * 179.97438 * 18 17 16 36 36 H 1.08003 * 119.98303 * 179.97438 * 19 18 17 37 37 H 1.07999 * 120.10040 * 359.97438 * 25 24 23 38 38 H 1.07999 * 119.90134 * 180.33878 * 26 25 24 39 39 H 1.08010 * 119.80759 * 179.69087 * 27 26 25 40 40 H 1.08000 * 119.90533 * 180.02562 * 28 27 26 41 41 H 1.08001 * 120.10108 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 3.0956 1.6962 -1.2125 5 1 1.2769 2.7464 -0.0006 6 1 3.0955 1.6964 1.2125 7 6 2.0073 -1.2116 0.0005 8 1 3.0873 -1.2118 0.0010 9 6 1.3107 -2.4182 0.0005 10 8 0.0893 -2.4182 0.0005 11 7 1.9845 -3.5854 0.0005 12 7 1.2840 -4.7987 0.0011 13 6 1.9407 -5.9363 0.0016 14 6 1.2356 -7.1575 0.0016 15 6 -0.2256 -7.3364 0.0005 16 6 -1.3025 -6.4493 -0.0002 17 6 -2.5908 -6.9398 -0.0006 18 6 -2.8174 -8.3077 0.0003 19 6 -1.7608 -9.1961 0.0010 20 6 -0.4539 -8.7229 0.0017 21 7 0.7724 -9.3635 0.0029 22 1 0.8931 -10.3260 0.0033 23 6 1.7866 -8.4545 0.0037 24 6 3.2214 -8.7741 0.0045 25 6 4.0956 -8.0870 0.8570 26 6 5.4382 -8.3976 0.8562 27 6 5.9259 -9.3768 0.0067 28 6 5.0698 -10.0566 -0.8437 29 6 3.7234 -9.7637 -0.8508 30 1 -0.4850 0.8401 -0.0004 31 1 2.9545 -3.5855 0.0009 32 1 3.0207 -5.9363 0.0020 33 1 -1.1277 -5.3836 -0.0009 34 1 -3.4268 -6.2560 0.0033 35 1 -3.8304 -8.6818 0.0004 36 1 -1.9498 -10.2595 0.0021 37 1 3.7177 -7.3196 1.5163 38 1 6.1126 -7.8729 1.5166 39 1 6.9801 -9.6118 0.0075 40 1 5.4585 -10.8189 -1.5026 41 1 3.0570 -10.2950 -1.5142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000494089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:17 Heat of formation + Delta-G solvation = 85.509753 kcal Electronic energy + Delta-G solvation = -26388.180126 eV Core-core repulsion = 22620.054771 eV Total energy + Delta-G solvation = -3768.125355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.122 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.08215 -39.02968 -37.53144 -36.61554 -35.25581 -32.81154 -32.24773 -31.64461 -31.13901 -30.16169 -28.94927 -27.96656 -26.47184 -23.79295 -23.02857 -22.63966 -21.74484 -20.86438 -19.89221 -19.02366 -17.90696 -17.08352 -16.91669 -16.35942 -15.92231 -15.52953 -15.18957 -14.99381 -14.45184 -14.34396 -14.11308 -13.81057 -13.63335 -13.44938 -13.12746 -13.07152 -12.76948 -12.69285 -12.51469 -11.57626 -11.53115 -11.41153 -11.39732 -11.33226 -11.14358 -10.92449 -10.69985 -10.58301 -10.37048 -9.53224 -9.32884 -9.14827 -9.09855 -8.90799 -7.99754 -7.90936 -7.69130 -6.64226 -6.35275 -4.92590 0.62114 1.19771 1.43995 1.80954 2.17938 3.03806 3.08046 3.12952 3.15291 3.46126 3.70159 3.86015 4.17695 4.25193 4.48612 4.50321 4.70084 4.74132 4.92477 4.93945 5.09748 5.20282 5.31665 5.37352 5.41330 5.53428 5.68203 5.78010 5.82404 5.84826 5.90930 5.91561 6.20755 6.27610 6.30251 6.42356 6.46943 6.57165 6.72235 6.79529 6.84353 7.06551 7.10500 7.23509 7.39982 7.55010 7.93508 8.03477 8.78458 8.81874 9.39040 10.42589 10.72830 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.009584 B = 0.003400 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.749823 B = 8232.235435 C =10998.341879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.088 3.912 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.535 4.535 8 H 0.069 0.931 9 C 0.559 3.441 10 O -0.556 6.556 11 N -0.590 5.590 12 N -0.187 5.187 13 C 0.044 3.956 14 C -0.077 4.077 15 C -0.079 4.079 16 C -0.046 4.046 17 C -0.153 4.153 18 C -0.096 4.096 19 C -0.144 4.144 20 C 0.095 3.905 21 N -0.577 5.577 22 H 0.413 0.587 23 C 0.113 3.887 24 C -0.023 4.023 25 C -0.094 4.094 26 C -0.116 4.116 27 C -0.118 4.118 28 C -0.119 4.119 29 C -0.109 4.109 30 H 0.274 0.726 31 H 0.366 0.634 32 H 0.103 0.897 33 H 0.146 0.854 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.055 -20.917 0.192 22.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.572 4.572 8 H 0.087 0.913 9 C 0.368 3.632 10 O -0.436 6.436 11 N -0.335 5.335 12 N 0.001 4.999 13 C -0.162 4.162 14 C -0.086 4.086 15 C -0.084 4.084 16 C -0.064 4.064 17 C -0.172 4.172 18 C -0.116 4.116 19 C -0.165 4.165 20 C -0.011 4.011 21 N -0.179 5.179 22 H 0.250 0.750 23 C -0.002 4.002 24 C -0.024 4.024 25 C -0.112 4.112 26 C -0.134 4.134 27 C -0.136 4.136 28 C -0.137 4.137 29 C -0.128 4.128 30 H 0.085 0.915 31 H 0.201 0.799 32 H 0.120 0.880 33 H 0.164 0.836 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.152 -20.237 0.190 20.884 hybrid contribution 1.995 0.011 -0.081 1.996 sum 7.147 -20.226 0.109 21.452 Atomic orbital electron populations 1.70096 1.07247 1.28010 1.31549 1.25721 0.94682 1.00651 0.92498 0.86287 0.79804 0.80221 0.79681 1.19022 1.20260 1.19014 1.19398 0.94569 0.90097 1.53121 0.91303 1.16365 0.87913 0.80349 0.78565 1.90763 1.13252 1.85419 1.54206 1.48062 1.07276 1.02164 1.76020 1.75172 1.26846 0.92462 1.05394 1.21986 0.96231 0.90254 1.07749 1.17875 0.90638 0.89520 1.10608 1.18937 0.92572 0.91505 1.05431 1.21130 0.90442 1.01030 0.93843 1.21000 0.96856 0.95081 1.04304 1.20814 0.97713 0.93160 0.99883 1.19924 0.89038 0.99171 1.08346 1.18226 0.86045 0.91850 1.04992 1.41341 1.03571 1.08005 1.64947 0.75049 1.18941 0.86576 0.87874 1.06771 1.18122 0.89271 0.97437 0.97564 1.21447 0.93051 0.98984 0.97751 1.21127 0.95253 0.97816 0.99225 1.21317 0.99767 0.96377 0.96126 1.21030 0.93241 1.00139 0.99312 1.21295 0.95824 0.97430 0.98263 0.91509 0.79865 0.87977 0.83608 0.85899 0.86101 0.86733 0.85020 0.85514 0.85985 0.85871 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.80 11.68 55.54 0.65 -21.15 16 2 C 0.09 2.41 5.49 -17.38 -0.10 2.31 16 3 Si 0.92 19.48 29.56 -169.99 -5.02 14.45 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.54 -14.92 9.18 -38.55 -0.35 -15.28 16 8 H 0.07 1.72 7.84 -52.49 -0.41 1.30 16 9 C 0.56 16.40 7.61 -15.86 -0.12 16.28 16 10 O -0.56 -18.58 15.16 4.78 0.07 -18.51 16 11 N -0.59 -14.41 6.26 28.65 0.18 -14.23 16 12 N -0.19 -4.35 9.62 30.95 0.30 -4.05 16 13 C 0.04 0.82 9.91 -16.71 -0.17 0.66 16 14 C -0.08 -1.33 6.15 -104.19 -0.64 -1.97 16 15 C -0.08 -1.42 6.21 -104.92 -0.65 -2.07 16 16 C -0.05 -0.87 9.75 -39.25 -0.38 -1.25 16 17 C -0.15 -2.40 10.03 -39.57 -0.40 -2.80 16 18 C -0.10 -1.26 10.02 -39.50 -0.40 -1.65 16 19 C -0.14 -1.82 10.07 -39.37 -0.40 -2.22 16 20 C 0.09 1.38 7.22 -83.78 -0.60 0.77 16 21 N -0.58 -6.91 6.02 -6.56 -0.04 -6.95 16 22 H 0.41 3.48 8.96 -40.82 -0.37 3.11 16 23 C 0.11 1.54 6.64 -81.37 -0.54 1.00 16 24 C -0.02 -0.27 5.70 -104.95 -0.60 -0.86 16 25 C -0.09 -1.03 8.42 -39.04 -0.33 -1.36 16 26 C -0.12 -1.07 10.03 -39.64 -0.40 -1.47 16 27 C -0.12 -0.97 10.05 -39.39 -0.40 -1.37 16 28 C -0.12 -0.99 10.03 -39.65 -0.40 -1.39 16 29 C -0.11 -1.05 9.81 -39.04 -0.38 -1.43 16 30 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 31 H 0.37 7.59 8.62 -182.60 -1.57 6.02 16 32 H 0.10 1.65 6.55 -52.49 -0.34 1.30 16 33 H 0.15 3.27 7.09 -52.49 -0.37 2.90 16 34 H 0.12 1.75 8.06 -52.48 -0.42 1.32 16 35 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.11 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.13 1.50 7.27 -52.49 -0.38 1.12 16 38 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -36.28 362.94 -11.18 -47.47 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -5.54 Total: 11.62 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -7.24 Total: -14.10 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 1.09 Total: -46.39 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.07 Total: -18.51 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.28 -11.18 -47.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000494089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.975 kcal (2) G-P(sol) polarization free energy of solvation -36.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds