Wall clock time and date at job start Tue Mar 31 2020 05:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86792 * 119.99867 * 2 1 4 4 H 1.48495 * 109.47422 * 274.98674 * 3 2 1 5 5 H 1.48501 * 109.47110 * 34.98806 * 3 2 1 6 6 H 1.48508 * 109.47147 * 154.98727 * 3 2 1 7 7 C 1.40005 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99639 * 186.32208 * 7 2 1 9 9 C 1.39504 * 119.99972 * 6.31241 * 7 2 1 10 10 O 1.22124 * 120.00110 * 353.66334 * 9 7 2 11 11 N 1.34774 * 119.99686 * 173.66251 * 9 7 2 12 12 N 1.40094 * 119.99976 * 180.02562 * 11 9 7 13 13 C 1.31469 * 119.99767 * 180.02562 * 12 11 9 14 14 C 1.40715 * 119.99662 * 180.02562 * 13 12 11 15 15 C 1.39495 * 126.15844 * 179.97438 * 14 13 12 16 16 C 1.39420 * 106.51508 * 179.97438 * 15 14 13 17 17 C 1.36213 * 107.29590 * 0.02562 * 16 15 14 18 18 I 2.09506 * 125.44467 * 180.02562 * 17 16 15 19 19 O 1.34069 * 109.11352 * 359.76936 * 17 16 15 20 20 H 0.96991 * 120.00166 * 359.97438 * 1 2 3 21 21 H 0.97004 * 120.00126 * 0.28053 * 11 9 7 22 22 H 1.07992 * 120.00284 * 0.02562 * 13 12 11 23 23 H 1.08001 * 126.73731 * 359.93307 * 15 14 13 24 24 H 1.08000 * 126.35394 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3834 2.1073 -1.3947 5 1 1.4954 2.6199 0.8028 6 1 3.5876 1.4120 0.5920 7 6 2.0073 -1.2125 -0.0005 8 1 3.0823 -1.2154 0.1024 9 6 1.3161 -2.4169 -0.1339 10 8 0.0949 -2.4233 -0.1338 11 7 1.9961 -3.5733 -0.2629 12 7 1.3020 -4.7828 -0.3974 13 6 1.9654 -5.9109 -0.5227 14 6 1.2682 -7.1257 -0.6583 15 6 1.8387 -8.3908 -0.7994 16 6 0.7810 -9.2936 -0.8996 17 6 -0.3735 -8.5752 -0.8198 18 53 -2.3090 -9.3724 -0.9076 19 8 -0.0734 -7.2771 -0.6705 20 1 -0.4850 0.8400 0.0004 21 1 2.9661 -3.5687 -0.2589 22 1 3.0453 -5.9054 -0.5215 23 1 2.8927 -8.6247 -0.8264 24 1 0.8621 -10.3639 -1.0193 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000566225.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:44 Heat of formation + Delta-G solvation = 38.029250 kcal Electronic energy + Delta-G solvation = -13849.537592 eV Core-core repulsion = 11011.515460 eV Total energy + Delta-G solvation = -2838.022132 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 333.960 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.33875 -37.80107 -35.48586 -33.15281 -32.83160 -32.15622 -30.63282 -27.91291 -26.30205 -22.83700 -21.74900 -20.41897 -19.78193 -17.98602 -16.39800 -16.05089 -16.03898 -15.57748 -14.51203 -13.96432 -13.36509 -12.99640 -12.83578 -12.64899 -12.24644 -11.63155 -11.48536 -11.09309 -10.74703 -10.67572 -10.43097 -10.31975 -9.90174 -9.82663 -9.14536 -8.73520 -7.87115 -7.27868 -6.49804 -5.06998 0.52058 1.02672 2.23959 2.98957 3.05891 3.10718 3.22433 3.39140 3.58007 3.99936 4.34367 4.85035 5.10650 5.49272 5.61054 5.65195 5.69061 5.99585 6.27912 6.43994 7.07057 7.12181 7.72166 7.86471 8.41423 8.66156 9.14808 10.28639 10.52304 Molecular weight = 333.96amu Principal moments of inertia in cm(-1) A = 0.034906 B = 0.002774 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.972353 B =10092.567316 C =10880.304465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.087 3.913 3 Si 0.920 3.080 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.532 4.532 8 H 0.073 0.927 9 C 0.551 3.449 10 O -0.550 6.550 11 N -0.575 5.575 12 N -0.154 5.154 13 C 0.012 3.988 14 C 0.093 3.907 15 C -0.203 4.203 16 C -0.146 4.146 17 C -0.061 4.061 18 I 0.058 6.942 19 O -0.131 6.131 20 H 0.276 0.724 21 H 0.373 0.627 22 H 0.139 0.861 23 H 0.159 0.841 24 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 -20.685 -2.324 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.138 4.138 3 Si 0.743 3.257 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.568 4.568 8 H 0.091 0.909 9 C 0.361 3.639 10 O -0.429 6.429 11 N -0.322 5.322 12 N 0.030 4.970 13 C -0.193 4.193 14 C 0.036 3.964 15 C -0.228 4.228 16 C -0.169 4.169 17 C -0.251 4.251 18 I 0.202 6.798 19 O -0.023 6.023 20 H 0.087 0.913 21 H 0.209 0.791 22 H 0.156 0.844 23 H 0.177 0.823 24 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.061 -20.215 -2.274 20.572 hybrid contribution 3.083 0.911 0.010 3.215 sum 0.022 -19.304 -2.264 19.436 Atomic orbital electron populations 1.70079 1.07413 1.28298 1.30741 1.25775 0.94709 1.00859 0.92430 0.86152 0.80157 0.80306 0.79056 1.19386 1.20013 1.18525 1.19481 0.95254 0.89930 1.52146 0.90859 1.16601 0.87973 0.80277 0.79046 1.90798 1.13242 1.84507 1.54368 1.48340 1.07834 1.02540 1.73501 1.75388 1.27690 0.93019 1.00902 1.21869 0.96726 0.88839 1.11844 1.19754 0.79661 0.94079 1.02903 1.22128 1.00199 0.90096 1.10346 1.21504 0.90185 1.00566 1.04652 1.27497 0.97872 0.83852 1.15841 1.96720 1.06599 1.77840 1.98647 1.84342 1.24106 1.25521 1.68374 0.91286 0.79138 0.84375 0.82307 0.82737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.41 11.71 55.55 0.65 -20.75 14 2 C 0.09 2.31 5.48 -17.36 -0.10 2.22 14 3 Si 0.92 18.94 29.56 -169.99 -5.03 13.91 14 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 14 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 14 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 14 7 C -0.53 -14.41 9.18 -38.45 -0.35 -14.77 14 8 H 0.07 1.76 7.85 -52.49 -0.41 1.34 14 9 C 0.55 15.89 7.60 -15.79 -0.12 15.77 14 10 O -0.55 -18.45 15.19 4.81 0.07 -18.38 14 11 N -0.58 -13.50 6.26 28.69 0.18 -13.32 14 12 N -0.15 -3.52 11.04 30.91 0.34 -3.18 14 13 C 0.01 0.20 10.72 -16.77 -0.18 0.02 14 14 C 0.09 1.51 6.98 -38.18 -0.27 1.25 14 15 C -0.20 -2.52 10.93 -38.67 -0.42 -2.95 14 16 C -0.15 -1.77 10.80 -39.87 -0.43 -2.20 14 17 C -0.06 -0.89 7.78 30.00 0.23 -0.66 14 18 I 0.06 0.68 40.68 -73.02 -2.97 -2.29 14 19 O -0.13 -2.39 10.63 4.32 0.05 -2.34 14 20 H 0.28 7.14 8.29 -40.82 -0.34 6.80 14 21 H 0.37 7.09 8.62 -182.60 -1.57 5.51 14 22 H 0.14 1.78 8.04 -52.49 -0.42 1.36 14 23 H 0.16 1.44 8.06 -52.49 -0.42 1.01 14 24 H 0.15 1.40 8.06 -52.49 -0.42 0.98 14 LS Contribution 264.79 15.07 3.99 3.99 Total: -1.00 -34.83 264.79 -6.74 -41.57 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -2.39 Total: 2.11 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.63 Total: -1.31 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 1.17 Total: -37.26 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: 0.12 Total: -20.72 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Atomic # 53 Polarization: 0.68 SS G_CDS: -2.97 Total: -2.29 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -34.83 -6.74 -41.57 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000566225.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.600 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds