Wall clock time and date at job start Tue Mar 31 2020 04:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30297 * 126.34429 * 2 1 4 4 N 1.28521 * 110.07788 * 179.97438 * 3 2 1 5 5 C 1.31285 * 109.85922 * 0.02562 * 4 3 2 6 6 S 1.76205 * 126.48461 * 180.02562 * 5 4 3 7 7 C 1.81000 * 99.99985 * 359.97357 * 6 5 4 8 8 C 1.50696 * 109.47173 * 180.02562 * 7 6 5 9 9 O 1.21284 * 120.00116 * 359.97438 * 8 7 6 10 10 N 1.34784 * 120.00067 * 180.02562 * 8 7 6 11 11 C 1.39237 * 119.99909 * 175.70393 * 10 8 7 12 12 C 1.39480 * 119.83259 * 215.01107 * 11 10 8 13 13 C 1.36381 * 120.16579 * 179.75947 * 12 11 10 14 14 C 1.40861 * 119.82793 * 0.51967 * 13 12 11 15 15 C 1.41160 * 120.16487 * 179.71676 * 14 13 12 16 16 H 1.08001 * 120.00069 * 214.80230 * 15 14 13 17 17 C 1.39897 * 119.99757 * 34.79881 * 15 14 13 18 18 N 1.30877 * 120.00348 * 355.56487 * 17 15 14 19 19 Si 1.86805 * 119.99882 * 175.56274 * 17 15 14 20 20 H 1.48494 * 109.47162 * 60.00121 * 19 17 15 21 21 H 1.48498 * 109.47177 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47015 * 299.99988 * 19 17 15 23 23 C 1.40878 * 119.67557 * 359.73597 * 14 13 12 24 24 C 1.36374 * 119.82272 * 0.02562 * 23 14 13 25 25 N 1.36535 * 107.03262 * 0.02562 * 5 4 3 26 26 N 1.36594 * 127.14727 * 180.02562 * 25 5 4 27 27 H 1.09003 * 109.47317 * 90.02090 * 1 2 3 28 28 H 1.08993 * 109.47642 * 210.02280 * 1 2 3 29 29 H 1.08998 * 109.46961 * 330.02644 * 1 2 3 30 30 H 1.09003 * 109.47272 * 300.00164 * 7 6 5 31 31 H 1.09001 * 109.47351 * 60.00074 * 7 6 5 32 32 H 0.96994 * 119.99824 * 355.70606 * 10 8 7 33 33 H 1.08002 * 119.91715 * 0.02886 * 12 11 10 34 34 H 1.08001 * 120.08174 * 180.25306 * 13 12 11 35 35 H 0.97000 * 119.99875 * 179.97438 * 18 17 15 36 36 H 1.07998 * 120.08378 * 179.97438 * 23 14 13 37 37 H 1.08000 * 119.91336 * 179.97438 * 24 23 14 38 38 H 1.00907 * 111.00211 * 89.97071 * 26 25 5 39 39 H 1.00896 * 111.00680 * 213.93254 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5129 0.6895 0.0005 5 6 3.5952 -0.6208 0.0004 6 16 5.0748 -1.5776 0.0016 7 6 6.3067 -0.2516 0.0021 8 6 7.6895 -0.8505 0.0026 9 8 7.8285 -2.0554 0.0030 10 7 8.7719 -0.0473 0.0036 11 6 10.0475 -0.5981 0.0943 12 6 11.0465 0.0771 0.7953 13 6 12.2970 -0.4585 0.8926 14 6 12.5812 -1.6915 0.2736 15 6 13.8746 -2.2495 0.3648 16 1 14.2818 -2.8074 -0.4655 17 6 14.6291 -2.0797 1.5306 18 7 14.1724 -1.3315 2.5025 19 14 16.2884 -2.9208 1.7001 20 1 17.1919 -2.4559 0.6172 21 1 16.8817 -2.5840 3.0191 22 1 16.1104 -4.3916 1.5990 23 6 11.5683 -2.3649 -0.4372 24 6 10.3214 -1.8191 -0.5217 25 7 2.3174 -1.1017 -0.0009 26 7 1.9289 -2.4113 -0.0010 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5141 29 1 -0.3633 0.8902 0.5134 30 1 6.1782 0.3642 -0.8881 31 1 6.1770 0.3646 0.8919 32 1 8.6622 0.9144 -0.0589 33 1 10.8282 1.0244 1.2659 34 1 13.0685 0.0635 1.4392 35 1 14.6954 -1.2142 3.3109 36 1 11.7791 -3.3104 -0.9147 37 1 9.5439 -2.3339 -1.0666 38 1 1.8255 -2.7579 0.9410 39 1 1.0774 -2.5359 -0.5277 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001424670.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:53 Heat of formation + Delta-G solvation = 93.755098 kcal Electronic energy + Delta-G solvation = -24129.605785 eV Core-core repulsion = 20393.741583 eV Total energy + Delta-G solvation = -3735.864202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.29772 -39.72955 -37.29591 -36.90601 -34.51199 -33.02684 -32.87650 -30.54298 -30.18420 -29.56716 -28.58585 -27.98392 -24.83051 -23.13976 -22.04737 -21.71027 -20.88490 -19.83220 -18.86979 -17.91990 -17.43882 -17.29588 -16.56466 -16.50817 -15.71311 -15.36625 -15.19037 -14.84932 -14.01800 -13.97394 -13.71968 -13.67438 -13.35115 -13.23636 -12.65601 -12.61530 -12.33894 -12.12902 -11.71828 -11.69534 -11.37640 -11.15096 -11.12896 -11.02532 -10.74736 -10.54390 -10.26039 -10.10272 -9.96308 -9.53924 -9.49430 -9.21460 -8.93074 -7.78079 -7.56294 -6.89707 -6.62881 -4.35737 0.76022 1.20094 1.80601 1.85641 2.38492 2.46135 2.97328 3.08034 3.09528 3.11906 3.27680 3.57639 3.60758 3.97549 4.03200 4.57441 4.68354 4.78814 4.83232 4.93340 4.95906 5.15507 5.25489 5.26346 5.53290 5.63991 5.93787 6.18208 6.42145 6.70075 6.87407 6.93946 7.04792 7.17327 7.27242 7.62175 7.68930 7.80887 8.04141 8.19758 8.22478 8.29568 8.55620 8.65625 8.91470 8.97560 10.28069 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.040048 B = 0.001921 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.997288 B =14569.645736 C =14884.729649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.142 3.858 3 N -0.270 5.270 4 N -0.294 5.294 5 C 0.172 3.828 6 S 0.114 5.886 7 C -0.154 4.154 8 C 0.517 3.483 9 O -0.518 6.518 10 N -0.640 5.640 11 C -0.001 4.001 12 C -0.117 4.117 13 C -0.142 4.142 14 C 0.101 3.899 15 C -0.460 4.460 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.811 5.811 19 Si 0.916 3.084 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.206 4.206 24 C -0.084 4.084 25 N -0.310 5.310 26 N -0.584 5.584 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.399 0.601 33 H 0.092 0.908 34 H 0.133 0.867 35 H 0.279 0.721 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.367 0.633 39 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.011 1.752 -2.543 24.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.129 4.129 3 N -0.111 5.111 4 N -0.140 5.140 5 C -0.202 4.202 6 S 0.341 5.659 7 C -0.306 4.306 8 C 0.302 3.698 9 O -0.395 6.395 10 N -0.283 5.283 11 C -0.093 4.093 12 C -0.138 4.138 13 C -0.162 4.162 14 C 0.098 3.902 15 C -0.491 4.491 16 H 0.094 0.906 17 C -0.146 4.146 18 N -0.438 5.438 19 Si 0.741 3.259 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.226 4.226 24 C -0.103 4.103 25 N -0.094 5.094 26 N -0.215 5.215 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.233 0.767 33 H 0.110 0.890 34 H 0.150 0.850 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.186 0.814 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -22.593 1.102 -2.648 22.775 hybrid contribution -1.006 0.361 0.751 1.306 sum -23.600 1.463 -1.897 23.721 Atomic orbital electron populations 1.20213 0.83335 1.04674 1.04304 1.25533 0.97168 0.83140 1.07036 1.73936 0.96577 1.23339 1.17288 1.74833 1.11744 1.05803 1.21578 1.27335 0.91066 0.95286 1.06513 1.86606 0.85515 1.02240 1.91517 1.23799 0.95225 1.02328 1.09239 1.19488 0.84742 0.87347 0.78269 1.90740 1.85758 1.13957 1.49072 1.42816 1.04666 1.09499 1.71334 1.17242 0.83299 0.99262 1.09472 1.20319 0.94301 0.99374 0.99767 1.21195 0.95563 0.96055 1.03370 1.17743 0.92648 0.90106 0.89658 1.19480 0.99182 1.29938 1.00471 0.90584 1.25888 0.99209 0.94091 0.95393 1.69752 1.37369 1.31043 1.05625 0.86238 0.81167 0.80401 0.78078 1.19033 1.20430 1.19086 1.20808 0.92879 1.00288 1.08582 1.20401 0.96516 0.94829 0.98603 1.44992 1.05214 1.02229 1.56932 1.59590 1.42912 0.97145 1.21891 0.89245 0.90880 0.88075 0.85895 0.85865 0.76652 0.88951 0.84971 0.91044 0.88511 0.87374 0.81410 0.80630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.19 36.01 0.37 0.09 16 2 C 0.14 1.36 8.13 -153.99 -1.25 0.11 16 3 N -0.27 -3.61 12.17 33.00 0.40 -3.21 16 4 N -0.29 -4.20 11.60 30.68 0.36 -3.84 16 5 C 0.17 2.19 8.20 -88.34 -0.72 1.47 16 6 S 0.11 1.49 21.40 -107.50 -2.30 -0.81 16 7 C -0.15 -1.96 5.72 36.00 0.21 -1.76 16 8 C 0.52 8.73 7.68 -10.98 -0.08 8.64 16 9 O -0.52 -10.74 13.28 5.55 0.07 -10.66 16 10 N -0.64 -10.92 5.30 -9.74 -0.05 -10.97 16 11 C 0.00 -0.01 6.30 -83.57 -0.53 -0.54 16 12 C -0.12 -2.64 9.90 -39.79 -0.39 -3.04 16 13 C -0.14 -3.61 8.62 -39.26 -0.34 -3.95 16 14 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 15 C -0.46 -12.21 9.02 -37.85 -0.34 -12.55 16 16 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 17 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 18 N -0.81 -21.00 10.60 55.55 0.59 -20.42 16 19 Si 0.92 18.95 29.56 -169.99 -5.03 13.92 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 23 C -0.21 -5.17 9.74 -39.25 -0.38 -5.55 16 24 C -0.08 -1.98 8.61 -39.79 -0.34 -2.32 16 25 N -0.31 -3.02 3.81 -9.93 -0.04 -3.06 16 26 N -0.58 -3.47 10.41 60.35 0.63 -2.84 16 27 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.12 8.14 -51.93 -0.42 -0.31 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.12 1.37 8.14 -51.91 -0.42 0.95 16 31 H 0.12 1.41 8.14 -51.92 -0.42 0.99 16 32 H 0.40 5.28 8.82 -40.82 -0.36 4.92 16 33 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 34 H 0.13 3.48 6.13 -52.49 -0.32 3.16 16 35 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 36 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 37 H 0.11 2.51 6.22 -52.49 -0.33 2.18 16 38 H 0.37 1.44 9.21 -181.36 -1.67 -0.23 16 39 H 0.38 1.03 8.85 -181.37 -1.60 -0.58 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -34.21 354.73 -11.31 -45.52 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.79 Total: 6.66 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -4.50 Total: -15.64 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 1.88 Total: -44.34 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.30 Total: -0.81 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.21 -11.31 -45.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001424670.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.276 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds