Wall clock time and date at job start Tue Mar 31 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38228 * 120.00201 * 2 1 4 4 C 1.38238 * 120.00120 * 180.23979 * 3 2 1 5 5 C 1.38234 * 119.99675 * 359.47825 * 4 3 2 6 6 S 1.76201 * 120.00103 * 180.27958 * 5 4 3 7 7 O 1.42095 * 106.40682 * 203.54258 * 6 5 4 8 8 O 1.42098 * 106.40259 * 336.46585 * 6 5 4 9 9 N 1.65604 * 107.21824 * 90.00267 * 6 5 4 10 10 C 1.46502 * 120.00063 * 89.99979 * 9 6 5 11 11 C 1.50697 * 109.47240 * 95.00202 * 10 9 6 12 12 H 1.08000 * 119.99791 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00390 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99599 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00369 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47129 * 89.99758 * 15 13 11 17 17 H 1.48501 * 109.47412 * 209.99778 * 15 13 11 18 18 H 1.48498 * 109.46904 * 329.99690 * 15 13 11 19 19 C 1.46500 * 120.00130 * 270.00594 * 9 6 5 20 20 C 1.50700 * 109.47264 * 94.99628 * 19 9 6 21 21 C 1.34510 * 125.78948 * 89.71633 * 20 19 9 22 22 C 1.41381 * 106.84245 * 179.88743 * 21 20 19 23 23 C 1.34518 * 106.84070 * 0.37354 * 22 21 20 24 24 O 1.34304 * 125.78660 * 270.02229 * 20 19 9 25 25 C 1.38234 * 120.00240 * 0.26327 * 5 4 3 26 26 C 1.38234 * 119.99739 * 179.71804 * 2 1 3 27 27 H 1.09008 * 109.47424 * 270.28049 * 1 2 3 28 28 H 1.09002 * 109.47258 * 30.27549 * 1 2 3 29 29 H 1.08998 * 109.47359 * 150.27651 * 1 2 3 30 30 H 1.08004 * 120.00256 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.00519 * 179.76445 * 4 3 2 32 32 H 1.09003 * 109.47254 * 215.00578 * 10 9 6 33 33 H 1.09010 * 109.46823 * 335.00056 * 10 9 6 34 34 H 0.97002 * 119.99611 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.47235 * 214.99810 * 19 9 6 36 36 H 1.09004 * 109.46978 * 334.99386 * 19 9 6 37 37 H 1.08004 * 126.58116 * 0.02931 * 21 20 19 38 38 H 1.07996 * 126.58410 * 180.16574 * 22 21 20 39 39 H 1.07992 * 125.79098 * 179.75158 * 23 22 21 40 40 H 1.07997 * 120.00460 * 180.02562 * 25 5 4 41 41 H 1.08001 * 120.00310 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0050 5 6 4.2717 -0.0001 0.0009 6 16 6.0337 -0.0002 0.0019 7 8 6.4353 -1.2523 -0.5366 8 8 6.4353 1.2470 -0.5478 9 7 6.5229 0.0069 1.5840 10 6 6.7392 -1.2586 2.2896 11 6 8.1973 -1.6322 2.2156 12 1 8.8932 -0.9912 1.6947 13 6 8.6428 -2.7927 2.8119 14 7 7.7953 -3.5735 3.4458 15 14 10.4503 -3.2553 2.7208 16 1 11.1688 -2.6758 3.8840 17 1 10.5845 -4.7341 2.7428 18 1 11.0344 -2.7239 1.4632 19 6 6.7393 1.2788 2.2782 20 6 5.4929 1.6553 3.0370 21 6 5.2088 1.3078 4.3050 22 6 3.9499 1.8731 4.6124 23 6 3.5361 2.5253 3.5110 24 8 4.4748 2.3900 2.5600 25 6 3.5805 -1.1972 0.0063 26 6 2.1981 -1.1972 0.0059 27 1 -0.3634 0.0050 1.0277 28 1 -0.3634 0.8875 -0.5181 29 1 -0.3634 -0.8924 -0.5095 30 1 1.6582 2.1325 -0.0004 31 1 4.1206 2.1323 -0.0089 32 1 6.4451 -1.1477 3.3333 33 1 6.1396 -2.0411 1.8243 34 1 8.1088 -4.3898 3.8657 35 1 7.5714 1.1757 2.9746 36 1 6.9697 2.0559 1.5493 37 1 5.8253 0.7132 4.9630 38 1 3.4203 1.7935 5.5502 39 1 2.6068 3.0656 3.4088 40 1 4.1204 -2.1325 0.0113 41 1 1.6581 -2.1325 0.0101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003046261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:16 Heat of formation + Delta-G solvation = -50.119281 kcal Electronic energy + Delta-G solvation = -27603.028168 eV Core-core repulsion = 23769.028124 eV Total energy + Delta-G solvation = -3834.000044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.36831 -40.27244 -38.34970 -37.61822 -36.90874 -34.68131 -33.96623 -33.76433 -32.03596 -31.48302 -28.98465 -28.16163 -26.51787 -24.32250 -23.83347 -22.84610 -22.55321 -21.44043 -20.09833 -19.16690 -18.70335 -18.25934 -17.93840 -17.42550 -16.79310 -16.50081 -16.36314 -16.03552 -15.63887 -15.36473 -15.17458 -14.75169 -14.54127 -14.51825 -14.22342 -13.69244 -13.63518 -13.52090 -13.28402 -13.20860 -13.15632 -13.11482 -13.09064 -13.04239 -12.91958 -12.43680 -12.39226 -12.09850 -12.03582 -11.85070 -11.65752 -10.76008 -10.58258 -10.12735 -10.02439 -9.94900 -9.36412 -8.19455 -6.31025 -0.62700 -0.16577 0.32588 0.84150 1.40833 1.43308 1.53799 1.74261 2.06630 2.18870 2.42465 2.54041 2.82773 3.12332 3.30369 3.78165 3.79352 3.87406 3.94214 3.97352 4.22375 4.33545 4.34556 4.36306 4.57313 4.67261 4.69924 4.74397 4.83411 4.98103 5.00797 5.10658 5.11162 5.13152 5.19409 5.25744 5.27456 5.38383 5.48013 5.63866 5.68406 5.82522 5.91156 6.08838 6.29866 6.76866 7.37822 8.88690 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.004950 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.969718 B = 5654.684630 C = 6481.878185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.029 4.029 3 C -0.140 4.140 4 C -0.015 4.015 5 C -0.689 4.689 6 S 2.685 3.315 7 O -0.987 6.987 8 O -0.986 6.986 9 N -0.980 5.980 10 C 0.275 3.725 11 C -0.547 4.547 12 H 0.058 0.942 13 C 0.015 3.985 14 N -0.924 5.924 15 Si 0.956 3.044 16 H -0.265 1.265 17 H -0.281 1.281 18 H -0.273 1.273 19 C 0.195 3.805 20 C -0.048 4.048 21 C -0.202 4.202 22 C -0.228 4.228 23 C -0.031 4.031 24 O -0.181 6.181 25 C -0.037 4.037 26 C -0.150 4.150 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.165 0.835 31 H 0.139 0.861 32 H 0.032 0.968 33 H 0.014 0.986 34 H 0.267 0.733 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.139 0.861 38 H 0.166 0.834 39 H 0.242 0.758 40 H 0.121 0.879 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.777 12.167 -1.185 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.029 4.029 3 C -0.159 4.159 4 C -0.034 4.034 5 C -0.780 4.780 6 S 2.780 3.220 7 O -0.978 6.978 8 O -0.976 6.976 9 N -0.816 5.816 10 C 0.152 3.848 11 C -0.586 4.586 12 H 0.076 0.924 13 C -0.184 4.184 14 N -0.564 5.564 15 Si 0.781 3.219 16 H -0.190 1.190 17 H -0.206 1.206 18 H -0.198 1.198 19 C 0.070 3.930 20 C -0.100 4.100 21 C -0.222 4.222 22 C -0.247 4.247 23 C -0.099 4.099 24 O -0.077 6.077 25 C -0.057 4.057 26 C -0.168 4.168 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.183 0.817 31 H 0.157 0.843 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.076 0.924 35 H 0.139 0.861 36 H 0.126 0.874 37 H 0.157 0.843 38 H 0.183 0.817 39 H 0.258 0.742 40 H 0.139 0.861 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.201 12.098 -2.111 20.330 hybrid contribution 0.683 -1.003 0.691 1.396 sum -15.518 11.096 -1.420 19.129 Atomic orbital electron populations 1.21000 0.87574 1.04722 1.04066 1.20689 0.98409 0.92396 0.91408 1.21488 0.92964 0.99497 1.01950 1.21030 0.96001 0.95518 0.90854 1.30657 1.25705 1.00858 1.20742 1.01722 0.74950 0.72366 0.72929 1.93535 1.82111 1.44742 1.77411 1.93462 1.82459 1.44608 1.77072 1.57427 1.81262 1.12591 1.30350 1.18657 0.95468 0.78240 0.92462 1.21801 0.94799 1.07381 1.34643 0.92390 1.25707 1.02215 0.95855 0.94644 1.70024 1.36210 1.13941 1.36177 0.85586 0.80013 0.77502 0.78815 1.18999 1.20612 1.19784 1.19768 0.91308 0.84540 0.97409 1.22984 0.92368 0.99497 0.95169 1.21843 0.99324 1.04490 0.96549 1.22086 0.97058 1.03835 1.01719 1.24777 0.95008 1.03567 0.86527 1.84011 1.25713 1.57124 1.40847 1.21021 0.96269 0.96026 0.92366 1.21450 0.92887 0.99897 1.02609 0.89137 0.89152 0.90066 0.81712 0.84317 0.95041 0.96780 0.92418 0.86096 0.87422 0.84307 0.81664 0.74218 0.86111 0.83065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 10.01 71.24 0.71 -0.64 16 2 C -0.03 -0.59 5.88 -19.87 -0.12 -0.71 16 3 C -0.14 -3.04 9.70 22.27 0.22 -2.82 16 4 C -0.01 -0.42 8.34 22.27 0.19 -0.24 16 5 C -0.69 -24.59 5.97 22.27 0.13 -24.46 16 6 S 2.69 115.37 5.65 -56.49 -0.32 115.06 16 7 O -0.99 -50.38 16.25 -128.00 -2.08 -52.46 16 8 O -0.99 -42.28 15.84 -128.00 -2.03 -44.30 16 9 N -0.98 -42.26 2.75 -523.89 -1.44 -43.70 16 10 C 0.27 14.11 5.10 85.63 0.44 14.55 16 11 C -0.55 -30.77 9.38 25.60 0.24 -30.53 16 12 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 13 C 0.02 0.87 5.46 84.65 0.46 1.33 16 14 N -0.92 -54.11 13.29 21.45 0.28 -53.82 16 15 Si 0.96 44.49 29.54 68.60 2.03 46.51 16 16 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 18 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 19 C 0.20 7.03 6.21 85.63 0.53 7.56 16 20 C -0.05 -1.59 6.90 24.83 0.17 -1.41 16 21 C -0.20 -6.38 10.81 22.19 0.24 -6.14 16 22 C -0.23 -5.64 10.91 22.19 0.24 -5.40 16 23 C -0.03 -0.68 12.09 66.97 0.81 0.13 16 24 O -0.18 -5.11 9.17 -2.58 -0.02 -5.13 16 25 C -0.04 -1.27 9.52 22.27 0.21 -1.06 16 26 C -0.15 -3.86 9.70 22.27 0.22 -3.64 16 27 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.09 0.73 8.09 -2.39 -0.02 0.71 16 29 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 30 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 31 H 0.14 3.89 7.34 -2.91 -0.02 3.87 16 32 H 0.03 1.65 8.11 -2.39 -0.02 1.63 16 33 H 0.01 0.79 7.61 -2.38 -0.02 0.78 16 34 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 35 H 0.12 4.23 8.11 -2.39 -0.02 4.21 16 36 H 0.11 3.58 6.91 -2.39 -0.02 3.56 16 37 H 0.14 4.59 8.06 -2.91 -0.02 4.56 16 38 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 39 H 0.24 2.68 8.06 -2.91 -0.02 2.66 16 40 H 0.12 4.47 7.62 -2.91 -0.02 4.44 16 41 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -74.77 366.21 2.15 -72.62 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 1.04 Total: 18.70 kcal Atomic # 6 Polarization: -58.16 SS G_CDS: 4.69 Total: -53.47 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -1.16 Total: -97.52 kcal Atomic # 8 Polarization: -97.76 SS G_CDS: -4.13 Total: -101.89 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 115.37 SS G_CDS: -0.32 Total: 115.06 kcal Total: -74.77 2.15 -72.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003046261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.499 kcal (2) G-P(sol) polarization free energy of solvation -74.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds