Wall clock time and date at job start Tue Mar 31 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35984 * 116.99457 * 2 1 4 4 C 1.39114 * 119.84922 * 0.27624 * 3 2 1 5 5 C 1.37665 * 120.44751 * 180.28268 * 4 3 2 6 6 C 1.39705 * 119.84536 * 359.44050 * 5 4 3 7 7 N 1.36029 * 133.29537 * 180.25490 * 6 5 4 8 8 C 1.30986 * 109.60998 * 180.02562 * 7 6 5 9 9 S 1.76201 * 125.07882 * 179.97438 * 8 7 6 10 10 C 1.80997 * 99.99832 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.46801 * 179.97438 * 10 9 8 12 12 O 1.21284 * 120.00108 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99972 * 179.97438 * 11 10 9 14 14 C 1.46495 * 119.99666 * 0.02562 * 13 11 10 15 15 C 1.46497 * 119.99929 * 179.97438 * 13 11 10 16 16 C 1.50703 * 109.47315 * 90.00076 * 15 13 11 17 17 H 1.08005 * 119.99667 * 0.02562 * 16 15 13 18 18 C 1.37874 * 120.00109 * 179.97438 * 16 15 13 19 19 N 1.31516 * 119.99613 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00148 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47091 * 89.99788 * 20 18 16 22 22 H 1.48501 * 109.47076 * 209.99663 * 20 18 16 23 23 H 1.48501 * 109.47122 * 329.99766 * 20 18 16 24 24 N 1.36703 * 109.84235 * 0.02562 * 8 7 6 25 25 H 0.97003 * 126.37920 * 180.02562 * 24 8 7 26 26 C 1.38529 * 107.24855 * 359.97438 * 24 8 7 27 27 C 1.38388 * 119.83791 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47229 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47435 * 299.99892 * 1 2 3 30 30 H 1.09004 * 109.47097 * 60.00382 * 1 2 3 31 31 H 1.08007 * 119.77989 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.08149 * 179.72142 * 5 4 3 33 33 H 1.09002 * 109.47117 * 299.99265 * 10 9 8 34 34 H 1.08996 * 109.47079 * 59.99951 * 10 9 8 35 35 H 1.09004 * 109.47055 * 90.00139 * 14 13 11 36 36 H 1.08997 * 109.47014 * 209.99596 * 14 13 11 37 37 H 1.08990 * 109.47627 * 329.99726 * 14 13 11 38 38 H 1.08998 * 109.46981 * 210.00315 * 15 13 11 39 39 H 1.09006 * 109.47586 * 330.00357 * 15 13 11 40 40 H 0.97001 * 119.99884 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.09658 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2117 0.0000 4 6 1.2854 2.3763 0.0058 5 6 1.8974 3.6094 0.0000 6 6 3.2919 3.6935 0.0001 7 7 4.1635 4.7379 -0.0003 8 6 5.3925 4.2849 -0.0006 9 16 6.8413 5.2877 -0.0018 10 6 6.0854 6.9322 -0.0016 11 6 7.1665 7.9820 -0.0019 12 8 8.3333 7.6509 -0.0027 13 7 6.8369 9.2889 -0.0023 14 6 5.4276 9.6887 -0.0019 15 6 7.8879 10.3094 -0.0020 16 6 8.2490 10.6591 -1.4227 17 1 7.7455 10.1703 -2.2438 18 6 9.2213 11.6037 -1.6744 19 7 9.5359 11.9092 -2.9143 20 14 10.0915 12.4496 -0.2544 21 1 11.2978 11.6695 0.1222 22 1 10.4956 13.8180 -0.6660 23 1 9.1731 12.5336 0.9096 24 7 5.3831 2.9179 -0.0010 25 1 6.1601 2.3372 -0.0009 26 6 4.0574 2.5162 -0.0004 27 6 3.4284 1.2803 0.0005 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.2072 2.3127 0.0107 32 1 1.3009 4.5098 0.0001 33 1 5.4662 7.0476 -0.8912 34 1 5.4674 7.0478 0.8888 35 1 5.0785 9.7883 1.0259 36 1 5.3208 10.6439 -0.5160 37 1 4.8349 8.9316 -0.5151 38 1 7.5284 11.2010 0.5115 39 1 8.7685 9.9241 0.5123 40 1 10.2202 12.5735 -3.0914 41 1 4.0157 0.3739 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004252331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:13 Heat of formation + Delta-G solvation = 12.038748 kcal Electronic energy + Delta-G solvation = -24822.182876 eV Core-core repulsion = 21023.170957 eV Total energy + Delta-G solvation = -3799.011918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.14891 -39.78407 -39.14676 -36.22302 -35.07953 -33.37259 -32.63236 -30.64998 -30.30510 -29.22977 -27.94080 -27.34585 -25.89713 -23.87921 -22.55703 -22.22395 -21.72867 -19.14632 -18.79410 -18.07345 -17.12513 -17.01445 -16.56956 -16.17213 -16.12570 -15.98432 -15.58133 -15.21263 -15.15069 -14.21513 -14.10412 -13.99764 -13.52648 -13.22604 -13.17157 -12.88882 -12.70388 -12.57122 -12.37316 -12.17444 -12.06954 -11.55793 -11.51162 -11.28722 -10.97621 -10.82004 -10.70949 -10.53780 -10.28442 -10.18586 -9.60042 -9.30129 -9.00468 -8.61725 -8.46882 -7.84230 -7.43870 -6.11285 -4.10915 0.63297 0.91467 1.16996 1.93638 2.40563 2.58463 3.10138 3.18456 3.27606 3.33435 3.35345 3.53926 3.71916 4.16987 4.37055 4.51434 4.63971 4.75826 4.77681 4.83473 4.88154 5.06775 5.11215 5.11869 5.20032 5.21910 5.39324 5.60074 5.61321 5.80848 5.81816 5.99018 6.07687 6.13235 6.36037 6.59832 6.85984 6.90676 6.98466 7.18791 7.48201 7.55716 8.04519 8.41117 8.71963 8.92054 9.47966 11.01910 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.033457 B = 0.002028 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.696289 B =13806.610982 C =14200.247924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.140 3.860 4 C -0.205 4.205 5 C -0.025 4.025 6 C 0.028 3.972 7 N -0.490 5.490 8 C 0.252 3.748 9 S 0.073 5.927 10 C -0.135 4.135 11 C 0.523 3.477 12 O -0.528 6.528 13 N -0.588 5.588 14 C 0.079 3.921 15 C 0.216 3.784 16 C -0.532 4.532 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.266 1.266 24 N -0.584 5.584 25 H 0.428 0.572 26 C 0.093 3.907 27 C -0.152 4.152 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.039 0.961 40 H 0.265 0.735 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.922 -21.375 8.133 29.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.093 3.907 4 C -0.226 4.226 5 C -0.045 4.045 6 C -0.092 4.092 7 N -0.215 5.215 8 C -0.123 4.123 9 S 0.303 5.697 10 C -0.287 4.287 11 C 0.307 3.693 12 O -0.406 6.406 13 N -0.319 5.319 14 C -0.065 4.065 15 C 0.096 3.904 16 C -0.570 4.570 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.190 1.190 24 N -0.199 5.199 25 H 0.268 0.732 26 C -0.020 4.020 27 C -0.174 4.174 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.224 -20.972 8.020 28.299 hybrid contribution -0.593 -0.085 0.480 0.768 sum -17.817 -21.057 8.501 28.864 Atomic orbital electron populations 1.23077 0.78123 1.03991 1.01553 1.86059 1.21508 1.26552 1.88899 1.18370 0.91096 0.84224 0.97006 1.21010 1.00130 0.91480 1.09931 1.20070 0.90637 0.97573 0.96232 1.19019 0.94018 0.88373 1.07783 1.71027 0.97123 1.29498 1.23810 1.26051 0.99761 0.84544 1.01945 1.86430 0.95281 0.96417 1.91562 1.23804 1.02433 0.93445 1.09003 1.19383 0.88583 0.83182 0.78118 1.90722 1.19309 1.80429 1.50105 1.47731 1.07854 1.05335 1.71003 1.21768 0.81631 1.02214 1.00914 1.19746 0.86465 0.85610 0.98627 1.21306 1.21742 1.22843 0.91140 0.90645 1.24856 0.96159 0.96341 0.95617 1.69895 1.31816 1.32979 1.18660 0.86847 0.80828 0.79127 0.82864 1.19853 1.21020 1.19044 1.42826 1.06764 1.06228 1.64083 0.73244 1.18409 0.83967 0.95522 1.04092 1.18758 0.91581 0.94995 1.12083 0.88219 0.92485 0.92464 0.84661 0.84688 0.85826 0.86086 0.93188 0.90155 0.91774 0.94841 0.94315 0.92498 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.71 10.49 -19.69 -0.21 -2.92 16 3 C 0.14 1.34 6.68 -39.20 -0.26 1.08 16 4 C -0.20 -1.77 9.01 -39.47 -0.36 -2.12 16 5 C -0.02 -0.26 10.09 -39.24 -0.40 -0.65 16 6 C 0.03 0.36 7.22 -84.63 -0.61 -0.25 16 7 N -0.49 -6.97 10.57 -10.88 -0.11 -7.09 16 8 C 0.25 3.34 8.21 -88.43 -0.73 2.62 16 9 S 0.07 1.04 21.45 -107.50 -2.31 -1.27 16 10 C -0.13 -2.00 4.19 36.01 0.15 -1.85 16 11 C 0.52 10.32 7.69 -10.98 -0.08 10.24 16 12 O -0.53 -12.50 15.44 5.55 0.09 -12.41 16 13 N -0.59 -11.76 2.86 -182.96 -0.52 -12.28 16 14 C 0.08 1.16 10.24 59.84 0.61 1.78 16 15 C 0.22 5.17 4.23 -5.19 -0.02 5.14 16 16 C -0.53 -15.08 9.94 -34.44 -0.34 -15.42 16 17 H 0.08 2.35 8.06 -52.48 -0.42 1.92 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 19 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 20 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 24 N -0.58 -6.46 6.28 -10.57 -0.07 -6.53 16 25 H 0.43 3.41 8.96 -40.82 -0.37 3.04 16 26 C 0.09 1.09 7.29 -83.85 -0.61 0.48 16 27 C -0.15 -1.55 10.00 -39.37 -0.39 -1.94 16 28 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.21 7.64 -51.93 -0.40 -0.19 16 30 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 31 H 0.14 0.78 6.26 -52.48 -0.33 0.45 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.12 1.74 7.40 -51.92 -0.38 1.35 16 34 H 0.12 1.56 8.11 -51.92 -0.42 1.14 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 37 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 38 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 39 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 362.62 15.07 5.46 5.46 Total: -1.00 -35.87 362.62 -8.76 -44.63 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.05 Total: 0.18 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -2.15 Total: 2.22 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.07 Total: -52.52 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.12 Total: -15.33 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.31 Total: -1.27 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.87 -8.76 -44.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004252331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.670 kcal (2) G-P(sol) polarization free energy of solvation -35.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds