Wall clock time and date at job start Tue Mar 31 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35984 * 116.99457 * 2 1 4 4 C 1.39114 * 119.84922 * 0.27624 * 3 2 1 5 5 C 1.37665 * 120.44751 * 180.28268 * 4 3 2 6 6 C 1.39705 * 119.84536 * 359.44050 * 5 4 3 7 7 N 1.36029 * 133.29537 * 180.25490 * 6 5 4 8 8 C 1.30986 * 109.60998 * 180.02562 * 7 6 5 9 9 S 1.76201 * 125.07882 * 179.97438 * 8 7 6 10 10 C 1.80997 * 99.99832 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.46801 * 179.97438 * 10 9 8 12 12 O 1.21284 * 120.00108 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99972 * 179.97438 * 11 10 9 14 14 C 1.46495 * 119.99666 * 0.02562 * 13 11 10 15 15 C 1.46497 * 119.99929 * 179.97438 * 13 11 10 16 16 C 1.50703 * 109.47315 * 90.00076 * 15 13 11 17 17 H 1.08005 * 119.99667 * 0.02562 * 16 15 13 18 18 C 1.37874 * 120.00109 * 179.97438 * 16 15 13 19 19 N 1.31516 * 119.99613 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00148 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47091 * 89.99788 * 20 18 16 22 22 H 1.48501 * 109.47076 * 209.99663 * 20 18 16 23 23 H 1.48501 * 109.47122 * 329.99766 * 20 18 16 24 24 N 1.36703 * 109.84235 * 0.02562 * 8 7 6 25 25 H 0.97003 * 126.37920 * 180.02562 * 24 8 7 26 26 C 1.38529 * 107.24855 * 359.97438 * 24 8 7 27 27 C 1.38388 * 119.83791 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47229 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47435 * 299.99892 * 1 2 3 30 30 H 1.09004 * 109.47097 * 60.00382 * 1 2 3 31 31 H 1.08007 * 119.77989 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.08149 * 179.72142 * 5 4 3 33 33 H 1.09002 * 109.47117 * 299.99265 * 10 9 8 34 34 H 1.08996 * 109.47079 * 59.99951 * 10 9 8 35 35 H 1.09004 * 109.47055 * 90.00139 * 14 13 11 36 36 H 1.08997 * 109.47014 * 209.99596 * 14 13 11 37 37 H 1.08990 * 109.47627 * 329.99726 * 14 13 11 38 38 H 1.08998 * 109.46981 * 210.00315 * 15 13 11 39 39 H 1.09006 * 109.47586 * 330.00357 * 15 13 11 40 40 H 0.97001 * 119.99884 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.09658 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2117 0.0000 4 6 1.2854 2.3763 0.0058 5 6 1.8974 3.6094 0.0000 6 6 3.2919 3.6935 0.0001 7 7 4.1635 4.7379 -0.0003 8 6 5.3925 4.2849 -0.0006 9 16 6.8413 5.2877 -0.0018 10 6 6.0854 6.9322 -0.0016 11 6 7.1665 7.9820 -0.0019 12 8 8.3333 7.6509 -0.0027 13 7 6.8369 9.2889 -0.0023 14 6 5.4276 9.6887 -0.0019 15 6 7.8879 10.3094 -0.0020 16 6 8.2490 10.6591 -1.4227 17 1 7.7455 10.1703 -2.2438 18 6 9.2213 11.6037 -1.6744 19 7 9.5359 11.9092 -2.9143 20 14 10.0915 12.4496 -0.2544 21 1 11.2978 11.6695 0.1222 22 1 10.4956 13.8180 -0.6660 23 1 9.1731 12.5336 0.9096 24 7 5.3831 2.9179 -0.0010 25 1 6.1601 2.3372 -0.0009 26 6 4.0574 2.5162 -0.0004 27 6 3.4284 1.2803 0.0005 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.2072 2.3127 0.0107 32 1 1.3009 4.5098 0.0001 33 1 5.4662 7.0476 -0.8912 34 1 5.4674 7.0478 0.8888 35 1 5.0785 9.7883 1.0259 36 1 5.3208 10.6439 -0.5160 37 1 4.8349 8.9316 -0.5151 38 1 7.5284 11.2010 0.5115 39 1 8.7685 9.9241 0.5123 40 1 10.2202 12.5735 -3.0914 41 1 4.0157 0.3739 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004252331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:11 Heat of formation + Delta-G solvation = -12.913049 kcal Electronic energy + Delta-G solvation = -24823.264867 eV Core-core repulsion = 21023.170957 eV Total energy + Delta-G solvation = -3800.093909 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.00393 -40.73547 -40.43171 -36.94788 -36.73869 -34.74428 -34.24168 -31.98869 -31.25036 -30.09420 -29.52590 -27.85556 -27.35583 -24.79876 -24.27965 -23.15744 -22.57565 -20.47972 -19.64322 -19.15314 -19.06716 -18.05471 -17.89909 -17.28318 -16.93223 -16.72828 -16.69288 -16.61663 -16.21039 -15.89235 -14.97567 -14.90881 -14.77012 -14.51540 -14.45824 -14.04657 -13.91003 -13.66747 -13.61397 -13.22161 -13.21389 -13.11854 -12.81198 -12.44271 -12.12719 -12.03459 -12.02920 -11.78813 -11.73889 -11.61080 -11.19575 -10.93348 -10.82092 -9.86700 -9.49212 -9.28667 -8.40027 -8.33121 -6.38873 -0.18009 -0.15524 0.39878 0.83302 1.34760 1.38801 1.46965 1.50611 1.57390 1.84299 2.23848 2.32114 2.54591 2.74151 3.01234 3.34772 3.47758 3.85156 3.96441 3.99018 4.12191 4.23039 4.33410 4.42551 4.43308 4.46727 4.48364 4.65928 4.78652 4.79424 4.91364 4.92993 4.97530 5.07862 5.24673 5.32718 5.44303 5.52453 5.57339 6.12775 6.21331 6.36219 6.51244 6.59125 6.62992 7.12656 7.27931 8.83681 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.033457 B = 0.002028 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.696289 B =13806.610982 C =14200.247924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.143 3.857 4 C -0.194 4.194 5 C -0.031 4.031 6 C -0.007 4.007 7 N -0.505 5.505 8 C 0.242 3.758 9 S 0.057 5.943 10 C -0.119 4.119 11 C 0.516 3.484 12 O -0.577 6.577 13 N -0.596 5.596 14 C 0.072 3.928 15 C 0.223 3.777 16 C -0.538 4.538 17 H 0.029 0.971 18 C 0.010 3.990 19 N -0.945 5.945 20 Si 0.948 3.052 21 H -0.276 1.276 22 H -0.276 1.276 23 H -0.235 1.235 24 N -0.575 5.575 25 H 0.439 0.561 26 C 0.085 3.915 27 C -0.165 4.165 28 H 0.118 0.882 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.168 0.832 32 H 0.150 0.850 33 H 0.133 0.867 34 H 0.146 0.854 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.024 0.976 40 H 0.268 0.732 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.490 -22.261 10.072 32.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.096 3.904 4 C -0.215 4.215 5 C -0.051 4.051 6 C -0.126 4.126 7 N -0.230 5.230 8 C -0.134 4.134 9 S 0.287 5.713 10 C -0.270 4.270 11 C 0.302 3.698 12 O -0.458 6.458 13 N -0.327 5.327 14 C -0.070 4.070 15 C 0.101 3.899 16 C -0.577 4.577 17 H 0.048 0.952 18 C -0.188 4.188 19 N -0.585 5.585 20 Si 0.771 3.229 21 H -0.202 1.202 22 H -0.202 1.202 23 H -0.158 1.158 24 N -0.192 5.192 25 H 0.281 0.719 26 C -0.027 4.027 27 C -0.187 4.187 28 H 0.137 0.863 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.185 0.815 32 H 0.168 0.832 33 H 0.151 0.849 34 H 0.164 0.836 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.859 -21.883 9.970 31.187 hybrid contribution 0.003 -0.004 -0.209 0.209 sum -19.856 -21.886 9.761 31.121 Atomic orbital electron populations 1.23419 0.75951 1.05776 1.02693 1.86060 1.23771 1.26020 1.88490 1.18554 0.91105 0.85053 0.95724 1.21337 1.01671 0.90423 1.08049 1.20357 0.89839 0.98918 0.95991 1.19447 0.95181 0.88433 1.09524 1.70924 0.97581 1.30554 1.23983 1.25698 0.99101 0.85199 1.03375 1.86472 0.96183 0.96406 1.92255 1.23603 1.00637 0.92198 1.10573 1.20110 0.89041 0.83834 0.76779 1.90691 1.21642 1.81316 1.52107 1.47820 1.09197 1.04974 1.70700 1.22072 0.78932 1.02516 1.03436 1.19436 0.87570 0.87384 0.95518 1.21550 1.21440 1.22336 0.92377 0.95234 1.25865 0.97006 0.97245 0.98654 1.70054 1.32918 1.34151 1.21342 0.85708 0.79566 0.77749 0.79887 1.20191 1.20152 1.15801 1.42762 1.07276 1.05674 1.63447 0.71924 1.18609 0.83914 0.95902 1.04323 1.18961 0.92340 0.94895 1.12496 0.86338 0.91219 0.91342 0.81500 0.83221 0.84885 0.83579 0.89666 0.90957 0.89442 0.92534 0.95786 0.92271 0.83910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 113.37 1.11 1.20 16 2 O -0.33 -4.81 10.49 -93.37 -0.98 -5.79 16 3 C 0.14 2.43 6.68 22.52 0.15 2.58 16 4 C -0.19 -2.81 9.01 22.34 0.20 -2.61 16 5 C -0.03 -0.58 10.09 22.49 0.23 -0.35 16 6 C -0.01 -0.16 7.22 39.38 0.28 0.12 16 7 N -0.51 -13.96 10.57 -188.33 -1.99 -15.95 16 8 C 0.24 6.33 8.21 179.58 1.47 7.80 16 9 S 0.06 1.63 21.45 -56.49 -1.21 0.41 16 10 C -0.12 -3.43 4.19 71.24 0.30 -3.14 16 11 C 0.52 20.41 7.69 87.66 0.67 21.08 16 12 O -0.58 -28.02 15.44 -3.04 -0.05 -28.07 16 13 N -0.60 -23.52 2.86 -851.15 -2.43 -25.95 16 14 C 0.07 2.00 10.24 127.77 1.31 3.30 16 15 C 0.22 10.61 4.23 85.63 0.36 10.97 16 16 C -0.54 -31.38 9.94 25.60 0.25 -31.13 16 17 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 18 C 0.01 0.61 5.47 84.65 0.46 1.07 16 19 N -0.94 -59.61 13.96 21.45 0.30 -59.31 16 20 Si 0.95 43.91 27.47 68.60 1.88 45.80 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 23 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 24 N -0.58 -12.52 6.28 -187.36 -1.18 -13.69 16 25 H 0.44 6.91 8.96 -92.71 -0.83 6.07 16 26 C 0.09 1.93 7.29 38.72 0.28 2.21 16 27 C -0.16 -3.14 10.00 22.41 0.22 -2.91 16 28 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.07 0.25 7.64 -2.39 -0.02 0.24 16 30 H 0.07 0.27 7.66 -2.38 -0.02 0.25 16 31 H 0.17 1.26 6.26 -2.91 -0.02 1.24 16 32 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.13 3.60 7.40 -2.39 -0.02 3.59 16 34 H 0.15 3.47 8.11 -2.40 -0.02 3.45 16 35 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 37 H 0.09 1.99 6.44 -2.39 -0.02 1.98 16 38 H 0.06 2.43 7.13 -2.39 -0.02 2.42 16 39 H 0.02 1.22 6.85 -2.38 -0.02 1.20 16 40 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 41 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -81.15 362.62 1.86 -79.30 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.19 Total: 13.05 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 7.31 Total: 10.21 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -5.30 Total: -114.91 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -1.03 Total: -33.86 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.80 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -1.21 Total: 0.41 kcal Total: -81.15 1.86 -79.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004252331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.386 kcal (2) G-P(sol) polarization free energy of solvation -81.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds