Wall clock time and date at job start Tue Mar 31 2020 05:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46827 * 2 1 4 4 S 1.81401 * 109.47611 * 240.00214 * 2 1 3 5 5 C 1.76194 * 103.00073 * 67.49861 * 4 2 1 6 6 C 1.38979 * 120.08311 * 265.49445 * 5 4 2 7 7 C 1.38077 * 119.92149 * 179.76567 * 6 5 4 8 8 C 1.38305 * 120.08165 * 0.48946 * 7 6 5 9 9 C 1.38302 * 120.15447 * 359.76125 * 8 7 6 10 10 C 1.38080 * 120.08791 * 0.02562 * 9 8 7 11 11 C 1.50700 * 109.47262 * 119.99519 * 2 1 3 12 12 O 1.21306 * 119.99792 * 100.00403 * 11 2 1 13 13 N 1.34773 * 120.00355 * 280.00373 * 11 2 1 14 14 N 1.40104 * 120.00111 * 179.97438 * 13 11 2 15 15 C 1.28009 * 119.99690 * 180.02562 * 14 13 11 16 16 C 1.50708 * 119.99775 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.46722 * 0.02562 * 16 15 14 18 18 C 1.52992 * 109.47341 * 240.00046 * 16 15 14 19 19 C 1.52998 * 109.46956 * 119.99953 * 16 15 14 20 20 C 1.50699 * 109.47220 * 180.02562 * 19 16 15 21 21 H 1.08004 * 119.99637 * 359.97438 * 20 19 16 22 22 C 1.37868 * 120.00433 * 180.02562 * 20 19 16 23 23 N 1.31517 * 119.99949 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00282 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47272 * 59.99850 * 24 22 20 26 26 H 1.48504 * 109.47501 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46971 * 299.99757 * 24 22 20 28 28 H 1.09002 * 109.46266 * 174.79237 * 1 2 3 29 29 H 1.08999 * 109.47109 * 294.78760 * 1 2 3 30 30 H 1.08994 * 109.46977 * 54.79357 * 1 2 3 31 31 H 1.08004 * 120.03465 * 0.02562 * 6 5 4 32 32 H 1.08000 * 119.95988 * 180.23464 * 7 6 5 33 33 H 1.07994 * 119.92591 * 179.74698 * 8 7 6 34 34 H 1.08009 * 119.95771 * 179.97438 * 9 8 7 35 35 H 1.07996 * 120.04292 * 179.97438 * 10 9 8 36 36 H 0.96998 * 120.00016 * 359.97438 * 13 11 2 37 37 H 1.08000 * 120.00440 * 0.02562 * 15 14 13 38 38 H 1.08999 * 109.46720 * 179.97438 * 17 16 15 39 39 H 1.08992 * 109.47315 * 299.99759 * 17 16 15 40 40 H 1.09002 * 109.47292 * 60.00110 * 17 16 15 41 41 H 1.09004 * 109.46922 * 300.00657 * 18 16 15 42 42 H 1.09003 * 109.47498 * 59.99700 * 18 16 15 43 43 H 1.08999 * 109.47308 * 180.02562 * 18 16 15 44 44 H 1.09002 * 109.47287 * 300.00030 * 19 16 15 45 45 H 1.09000 * 109.47185 * 60.00268 * 19 16 15 46 46 H 0.97001 * 120.00391 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1348 -0.8551 -1.4811 5 6 1.6476 0.2222 -2.7875 6 6 0.4490 0.0071 -3.4574 7 6 0.0681 0.8562 -4.4774 8 6 0.8825 1.9139 -4.8395 9 6 2.0783 2.1279 -4.1785 10 6 2.4637 1.2855 -3.1545 11 6 2.0324 -0.7103 1.2305 12 8 2.4066 -1.8618 1.1558 13 7 2.0659 -0.0663 2.4139 14 7 2.5324 -0.7269 3.5580 15 6 2.5638 -0.1153 4.6821 16 6 3.0651 -0.8260 5.9129 17 6 3.4715 -2.2548 5.5466 18 6 1.9565 -0.8648 6.9665 19 6 4.2768 -0.0797 6.4747 20 6 4.7785 -0.7907 7.7051 21 1 4.2824 -1.6852 8.0518 22 6 5.8701 -0.2988 8.3886 23 7 6.4740 0.7907 7.9666 24 14 6.4916 -1.1798 9.9141 25 1 6.8860 -2.5667 9.5587 26 1 7.6678 -0.4556 10.4594 27 1 5.4154 -1.2178 10.9366 28 1 -0.3632 -1.0235 -0.0933 29 1 -0.3633 0.4308 0.9330 30 1 -0.3633 0.5924 -0.8396 31 1 -0.1856 -0.8208 -3.1776 32 1 -0.8649 0.6919 -4.9959 33 1 0.5840 2.5740 -5.6403 34 1 2.7120 2.9546 -4.4641 35 1 3.3978 1.4530 -2.6392 36 1 1.7670 0.8546 2.4736 37 1 2.2302 0.9098 4.7487 38 1 3.8346 -2.7687 6.4367 39 1 2.6086 -2.7867 5.1461 40 1 4.2615 -2.2268 4.7961 41 1 1.6673 0.1533 7.2272 42 1 1.0932 -1.3964 6.5663 43 1 2.3192 -1.3784 7.8569 44 1 5.0667 -0.0521 5.7240 45 1 3.9877 0.9383 6.7355 46 1 7.2422 1.1366 8.4473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005362334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:33 Heat of formation + Delta-G solvation = 19.317419 kcal Electronic energy + Delta-G solvation = -24936.817784 eV Core-core repulsion = 21339.380498 eV Total energy + Delta-G solvation = -3597.437286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.66473 -39.33389 -37.61106 -35.27616 -33.68032 -32.44210 -31.42144 -31.34714 -30.57810 -27.07128 -26.39437 -25.24168 -23.92904 -23.19341 -22.97913 -21.90781 -20.63212 -18.70873 -17.97492 -17.13409 -16.91769 -16.38226 -16.20765 -15.48652 -15.43611 -15.20523 -14.62117 -14.40176 -14.29131 -13.88739 -13.71025 -13.47613 -13.25688 -13.00397 -12.88726 -12.70032 -12.35839 -12.06201 -11.81277 -11.63586 -11.61526 -11.32540 -10.97988 -10.93031 -10.84028 -10.59025 -10.54703 -10.27499 -10.14011 -9.93363 -9.63992 -9.43962 -9.41144 -9.20911 -8.98888 -8.53080 -8.36315 -7.98120 -6.01289 -4.02394 0.42514 0.93071 1.32766 2.07583 2.26894 2.65130 2.95356 3.30301 3.33956 3.38751 3.41181 4.27997 4.42958 4.45792 4.48702 4.52629 4.63278 4.64084 4.98375 5.03924 5.11404 5.15305 5.26142 5.28198 5.29936 5.35660 5.54438 5.66863 5.86152 5.89410 5.91722 5.94094 6.00587 6.03550 6.36302 6.42764 6.53469 6.64315 6.79740 7.02619 7.08422 7.13917 7.24236 7.58364 7.63524 7.75097 7.96836 8.37158 8.55842 9.01421 9.60810 11.10205 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.025871 B = 0.001887 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.020197 B =14838.222547 C =15237.081675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.109 0.891 4 S -0.069 6.069 5 C -0.134 4.134 6 C -0.067 4.067 7 C -0.131 4.131 8 C -0.095 4.095 9 C -0.130 4.130 10 C -0.071 4.071 11 C 0.551 3.449 12 O -0.488 6.488 13 N -0.589 5.589 14 N -0.248 5.248 15 C 0.111 3.889 16 C -0.015 4.015 17 C -0.118 4.118 18 C -0.123 4.123 19 C 0.040 3.960 20 C -0.511 4.511 21 H 0.062 0.938 22 C 0.057 3.943 23 N -0.896 5.896 24 Si 0.891 3.109 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.277 1.277 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.378 0.622 37 H 0.101 0.899 38 H 0.064 0.936 39 H 0.038 0.962 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.035 0.965 43 H 0.076 0.924 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.270 5.125 -23.037 28.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.236 4.236 3 H 0.127 0.873 4 S 0.164 5.836 5 C -0.246 4.246 6 C -0.088 4.088 7 C -0.151 4.151 8 C -0.113 4.113 9 C -0.149 4.149 10 C -0.092 4.092 11 C 0.335 3.665 12 O -0.359 6.359 13 N -0.330 5.330 14 N -0.049 5.049 15 C -0.104 4.104 16 C -0.017 4.017 17 C -0.176 4.176 18 C -0.181 4.181 19 C 0.002 3.998 20 C -0.549 4.549 21 H 0.080 0.920 22 C -0.145 4.145 23 N -0.535 5.535 24 Si 0.719 3.281 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.202 1.202 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.215 0.785 37 H 0.118 0.882 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.095 0.905 44 H 0.038 0.962 45 H 0.037 0.963 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.133 2.579 -23.691 27.707 hybrid contribution -0.542 2.468 1.051 2.737 sum -14.675 5.047 -22.640 27.448 Atomic orbital electron populations 1.22021 0.90518 1.04310 1.03125 1.23515 1.01193 1.03496 0.95438 0.87307 1.86315 1.75442 1.28040 0.93820 1.22019 0.98672 1.01138 1.02742 1.21652 0.94567 0.98108 0.94473 1.21250 1.00289 0.95607 0.97938 1.21367 0.94193 0.97097 0.98680 1.21255 0.97153 0.99921 0.96608 1.21705 0.98676 0.92789 0.96029 1.19320 0.78428 0.86847 0.81954 1.90763 1.44389 1.16385 1.84367 1.47001 1.64630 1.14487 1.06871 1.74676 1.13299 1.23332 0.93570 1.26745 0.92925 0.97531 0.93193 1.19841 0.97648 0.96139 0.88116 1.21606 1.00151 0.94612 1.01220 1.21716 0.96028 1.01327 0.99030 1.19133 0.89966 0.94933 0.95788 1.21124 1.13059 1.10802 1.09915 0.91997 1.25001 0.96711 0.95054 0.97687 1.69950 1.21603 1.21787 1.40190 0.86669 0.78294 0.79827 0.83288 1.20210 1.21449 1.20245 0.90322 0.91277 0.91085 0.84949 0.85472 0.85661 0.85448 0.85021 0.78499 0.88161 0.91709 0.94327 0.92979 0.93171 0.94596 0.90530 0.96250 0.96264 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.05 37.16 0.34 -0.83 16 2 C -0.10 -1.11 3.13 -27.88 -0.09 -1.19 16 3 H 0.11 0.94 8.14 -51.92 -0.42 0.52 16 4 S -0.07 -0.82 20.33 -107.50 -2.19 -3.01 16 5 C -0.13 -1.26 5.32 -39.03 -0.21 -1.47 16 6 C -0.07 -0.53 9.38 -39.37 -0.37 -0.90 16 7 C -0.13 -0.84 10.04 -39.62 -0.40 -1.24 16 8 C -0.10 -0.58 10.04 -39.53 -0.40 -0.98 16 9 C -0.13 -0.88 10.04 -39.62 -0.40 -1.27 16 10 C -0.07 -0.60 9.79 -39.37 -0.39 -0.98 16 11 C 0.55 8.28 7.12 -10.99 -0.08 8.20 16 12 O -0.49 -9.57 16.38 5.54 0.09 -9.48 16 13 N -0.59 -8.54 6.25 31.22 0.20 -8.34 16 14 N -0.25 -4.47 9.70 32.67 0.32 -4.15 16 15 C 0.11 1.91 9.56 -13.87 -0.13 1.78 16 16 C -0.01 -0.29 0.75 -155.66 -0.12 -0.40 16 17 C -0.12 -2.38 7.45 37.16 0.28 -2.11 16 18 C -0.12 -2.13 8.20 37.15 0.30 -1.83 16 19 C 0.04 0.96 4.02 -27.88 -0.11 0.85 16 20 C -0.51 -13.43 7.65 -34.44 -0.26 -13.69 16 21 H 0.06 1.57 5.68 -52.48 -0.30 1.27 16 22 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 23 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 24 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.49 7.47 -51.93 -0.39 0.11 16 31 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 32 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 33 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 34 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.38 4.02 8.63 -182.60 -1.58 2.44 16 37 H 0.10 1.44 8.00 -52.49 -0.42 1.02 16 38 H 0.06 1.33 6.62 -51.93 -0.34 0.98 16 39 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 40 H 0.05 1.12 8.06 -51.93 -0.42 0.70 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 1.42 6.62 -51.93 -0.34 1.07 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 398.55 15.07 6.01 6.01 Total: -1.00 -33.16 398.55 -10.40 -43.56 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -8.42 Total: -0.74 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -2.12 Total: -14.60 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 1.25 Total: -37.81 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -0.82 SS G_CDS: -2.19 Total: -3.01 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.16 -10.40 -43.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005362334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.882 kcal (2) G-P(sol) polarization free energy of solvation -33.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds