Wall clock time and date at job start Tue Mar 31 2020 05:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46827 * 2 1 4 4 S 1.81401 * 109.47611 * 240.00214 * 2 1 3 5 5 C 1.76194 * 103.00073 * 67.49861 * 4 2 1 6 6 C 1.38979 * 120.08311 * 265.49445 * 5 4 2 7 7 C 1.38077 * 119.92149 * 179.76567 * 6 5 4 8 8 C 1.38305 * 120.08165 * 0.48946 * 7 6 5 9 9 C 1.38302 * 120.15447 * 359.76125 * 8 7 6 10 10 C 1.38080 * 120.08791 * 0.02562 * 9 8 7 11 11 C 1.50700 * 109.47262 * 119.99519 * 2 1 3 12 12 O 1.21306 * 119.99792 * 100.00403 * 11 2 1 13 13 N 1.34773 * 120.00355 * 280.00373 * 11 2 1 14 14 N 1.40104 * 120.00111 * 179.97438 * 13 11 2 15 15 C 1.28009 * 119.99690 * 180.02562 * 14 13 11 16 16 C 1.50708 * 119.99775 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.46722 * 0.02562 * 16 15 14 18 18 C 1.52992 * 109.47341 * 240.00046 * 16 15 14 19 19 C 1.52998 * 109.46956 * 119.99953 * 16 15 14 20 20 C 1.50699 * 109.47220 * 180.02562 * 19 16 15 21 21 H 1.08004 * 119.99637 * 359.97438 * 20 19 16 22 22 C 1.37868 * 120.00433 * 180.02562 * 20 19 16 23 23 N 1.31517 * 119.99949 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00282 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47272 * 59.99850 * 24 22 20 26 26 H 1.48504 * 109.47501 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46971 * 299.99757 * 24 22 20 28 28 H 1.09002 * 109.46266 * 174.79237 * 1 2 3 29 29 H 1.08999 * 109.47109 * 294.78760 * 1 2 3 30 30 H 1.08994 * 109.46977 * 54.79357 * 1 2 3 31 31 H 1.08004 * 120.03465 * 0.02562 * 6 5 4 32 32 H 1.08000 * 119.95988 * 180.23464 * 7 6 5 33 33 H 1.07994 * 119.92591 * 179.74698 * 8 7 6 34 34 H 1.08009 * 119.95771 * 179.97438 * 9 8 7 35 35 H 1.07996 * 120.04292 * 179.97438 * 10 9 8 36 36 H 0.96998 * 120.00016 * 359.97438 * 13 11 2 37 37 H 1.08000 * 120.00440 * 0.02562 * 15 14 13 38 38 H 1.08999 * 109.46720 * 179.97438 * 17 16 15 39 39 H 1.08992 * 109.47315 * 299.99759 * 17 16 15 40 40 H 1.09002 * 109.47292 * 60.00110 * 17 16 15 41 41 H 1.09004 * 109.46922 * 300.00657 * 18 16 15 42 42 H 1.09003 * 109.47498 * 59.99700 * 18 16 15 43 43 H 1.08999 * 109.47308 * 180.02562 * 18 16 15 44 44 H 1.09002 * 109.47287 * 300.00030 * 19 16 15 45 45 H 1.09000 * 109.47185 * 60.00268 * 19 16 15 46 46 H 0.97001 * 120.00391 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1348 -0.8551 -1.4811 5 6 1.6476 0.2222 -2.7875 6 6 0.4490 0.0071 -3.4574 7 6 0.0681 0.8562 -4.4774 8 6 0.8825 1.9139 -4.8395 9 6 2.0783 2.1279 -4.1785 10 6 2.4637 1.2855 -3.1545 11 6 2.0324 -0.7103 1.2305 12 8 2.4066 -1.8618 1.1558 13 7 2.0659 -0.0663 2.4139 14 7 2.5324 -0.7269 3.5580 15 6 2.5638 -0.1153 4.6821 16 6 3.0651 -0.8260 5.9129 17 6 3.4715 -2.2548 5.5466 18 6 1.9565 -0.8648 6.9665 19 6 4.2768 -0.0797 6.4747 20 6 4.7785 -0.7907 7.7051 21 1 4.2824 -1.6852 8.0518 22 6 5.8701 -0.2988 8.3886 23 7 6.4740 0.7907 7.9666 24 14 6.4916 -1.1798 9.9141 25 1 6.8860 -2.5667 9.5587 26 1 7.6678 -0.4556 10.4594 27 1 5.4154 -1.2178 10.9366 28 1 -0.3632 -1.0235 -0.0933 29 1 -0.3633 0.4308 0.9330 30 1 -0.3633 0.5924 -0.8396 31 1 -0.1856 -0.8208 -3.1776 32 1 -0.8649 0.6919 -4.9959 33 1 0.5840 2.5740 -5.6403 34 1 2.7120 2.9546 -4.4641 35 1 3.3978 1.4530 -2.6392 36 1 1.7670 0.8546 2.4736 37 1 2.2302 0.9098 4.7487 38 1 3.8346 -2.7687 6.4367 39 1 2.6086 -2.7867 5.1461 40 1 4.2615 -2.2268 4.7961 41 1 1.6673 0.1533 7.2272 42 1 1.0932 -1.3964 6.5663 43 1 2.3192 -1.3784 7.8569 44 1 5.0667 -0.0521 5.7240 45 1 3.9877 0.9383 6.7355 46 1 7.2422 1.1366 8.4473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005362334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:30 Heat of formation + Delta-G solvation = 0.907395 kcal Electronic energy + Delta-G solvation = -24937.616102 eV Core-core repulsion = 21339.380498 eV Total energy + Delta-G solvation = -3598.235604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -40.90621 -39.86112 -39.12026 -36.76337 -34.75916 -34.28977 -32.08508 -31.93734 -31.71950 -28.98856 -27.95032 -26.31382 -25.52055 -23.81290 -23.53148 -23.37044 -21.83277 -19.98020 -18.89417 -18.39720 -18.25449 -17.98659 -17.09362 -16.59435 -16.48860 -16.07914 -15.89220 -15.55512 -15.38067 -14.99597 -14.85599 -14.53427 -14.38180 -14.11902 -13.97617 -13.75930 -13.43495 -13.29170 -13.07412 -12.92198 -12.73160 -12.70279 -12.58989 -12.29814 -12.22709 -12.11113 -12.08739 -11.70023 -11.35704 -11.23133 -11.18709 -11.10238 -10.77638 -10.47491 -9.94141 -9.90378 -9.81780 -8.88615 -8.11985 -6.18576 -0.22730 0.40529 0.56702 0.80586 1.45493 1.47698 1.48819 1.51805 1.54703 1.73426 2.47398 2.76105 3.23000 3.27047 3.69616 3.78997 3.84136 3.93731 4.01282 4.06303 4.20942 4.34261 4.39905 4.50239 4.51940 4.52918 4.57439 4.60726 4.77086 4.89960 5.00837 5.01422 5.06309 5.15057 5.16445 5.37214 5.40687 5.41595 5.50917 5.51529 5.52519 5.56220 5.77050 5.90680 5.93560 6.01145 6.31992 6.44837 6.94534 7.35728 7.48520 8.99912 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.025871 B = 0.001887 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.020197 B =14838.222547 C =15237.081675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 H 0.132 0.868 4 S -0.130 6.130 5 C -0.139 4.139 6 C -0.077 4.077 7 C -0.130 4.130 8 C -0.092 4.092 9 C -0.131 4.131 10 C -0.087 4.087 11 C 0.548 3.452 12 O -0.541 6.541 13 N -0.578 5.578 14 N -0.279 5.279 15 C 0.112 3.888 16 C -0.012 4.012 17 C -0.109 4.109 18 C -0.116 4.116 19 C 0.048 3.952 20 C -0.516 4.516 21 H 0.071 0.929 22 C -0.001 4.001 23 N -0.935 5.935 24 Si 0.955 3.045 25 H -0.273 1.273 26 H -0.290 1.290 27 H -0.263 1.263 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.136 0.864 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.129 0.871 36 H 0.400 0.600 37 H 0.133 0.867 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.027 0.973 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.063 0.937 44 H -0.018 1.018 45 H 0.007 0.993 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.559 6.390 -23.992 30.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.218 4.218 3 H 0.150 0.850 4 S 0.103 5.897 5 C -0.251 4.251 6 C -0.098 4.098 7 C -0.149 4.149 8 C -0.110 4.110 9 C -0.151 4.151 10 C -0.108 4.108 11 C 0.334 3.666 12 O -0.415 6.415 13 N -0.321 5.321 14 N -0.081 5.081 15 C -0.102 4.102 16 C -0.015 4.015 17 C -0.167 4.167 18 C -0.175 4.175 19 C 0.010 3.990 20 C -0.554 4.554 21 H 0.089 0.911 22 C -0.198 4.198 23 N -0.576 5.576 24 Si 0.781 3.219 25 H -0.199 1.199 26 H -0.216 1.216 27 H -0.188 1.188 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.154 0.846 32 H 0.170 0.830 33 H 0.171 0.829 34 H 0.165 0.835 35 H 0.147 0.853 36 H 0.241 0.759 37 H 0.149 0.851 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.000 1.000 45 H 0.025 0.975 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.450 3.862 -24.631 29.870 hybrid contribution 0.152 2.108 1.196 2.429 sum -16.298 5.971 -23.435 29.163 Atomic orbital electron populations 1.22009 0.88411 1.04172 1.04718 1.23447 1.02570 1.03434 0.92367 0.84984 1.86521 1.76438 1.30407 0.96329 1.21859 0.99801 1.01235 1.02170 1.21770 0.94201 0.98752 0.95034 1.21560 1.01184 0.94997 0.97171 1.21751 0.93501 0.97044 0.98742 1.21524 0.97775 0.99955 0.95849 1.21787 0.98744 0.93191 0.97048 1.20149 0.77161 0.86422 0.82885 1.90738 1.46688 1.18855 1.85238 1.46836 1.64041 1.15426 1.05771 1.74542 1.13473 1.25430 0.94639 1.26529 0.93021 0.98610 0.92066 1.19645 0.96746 0.95087 0.90031 1.21495 0.99774 0.95389 1.00026 1.21639 0.95789 1.02357 0.97665 1.18943 0.90883 0.94799 0.94346 1.21543 1.12784 1.10830 1.10233 0.91121 1.25863 0.97247 0.95834 1.00881 1.70086 1.22273 1.23505 1.41734 0.85640 0.77853 0.78499 0.79894 1.19860 1.21619 1.18782 0.91447 0.89714 0.89228 0.84604 0.83036 0.82890 0.83492 0.85324 0.75914 0.85053 0.92534 0.93097 0.95414 0.91934 0.92186 0.91843 1.00012 0.97464 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.05 71.98 0.65 -1.36 16 2 C -0.09 -1.77 3.13 29.85 0.09 -1.67 16 3 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 4 S -0.13 -3.16 20.33 -56.49 -1.15 -4.31 16 5 C -0.14 -2.51 5.32 22.62 0.12 -2.39 16 6 C -0.08 -1.10 9.38 22.41 0.21 -0.89 16 7 C -0.13 -1.29 10.04 22.25 0.22 -1.07 16 8 C -0.09 -0.82 10.04 22.30 0.22 -0.60 16 9 C -0.13 -1.47 10.04 22.25 0.22 -1.25 16 10 C -0.09 -1.37 9.79 22.41 0.22 -1.15 16 11 C 0.55 16.43 7.12 87.66 0.62 17.06 16 12 O -0.54 -21.91 16.38 -3.11 -0.05 -21.96 16 13 N -0.58 -16.20 6.25 -173.52 -1.08 -17.28 16 14 N -0.28 -9.97 9.70 -50.46 -0.49 -10.46 16 15 C 0.11 3.76 9.56 88.67 0.85 4.60 16 16 C -0.01 -0.48 0.75 -52.93 -0.04 -0.52 16 17 C -0.11 -4.45 7.45 71.98 0.54 -3.91 16 18 C -0.12 -3.85 8.20 71.98 0.59 -3.26 16 19 C 0.05 2.39 4.02 29.85 0.12 2.51 16 20 C -0.52 -27.37 7.65 25.60 0.20 -27.17 16 21 H 0.07 3.56 5.68 -2.91 -0.02 3.54 16 22 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 23 N -0.93 -55.49 13.29 21.44 0.28 -55.21 16 24 Si 0.96 43.42 29.54 68.60 2.03 45.44 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 26 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 27 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.04 7.47 -2.39 -0.02 1.02 16 31 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 32 H 0.15 0.74 8.06 -2.91 -0.02 0.71 16 33 H 0.15 0.51 8.06 -2.91 -0.02 0.49 16 34 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 35 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.40 7.68 8.63 -213.32 -1.84 5.84 16 37 H 0.13 3.49 8.00 -2.91 -0.02 3.46 16 38 H 0.06 2.34 6.62 -2.39 -0.02 2.32 16 39 H 0.05 1.91 8.06 -2.39 -0.02 1.89 16 40 H 0.03 1.22 8.06 -2.39 -0.02 1.20 16 41 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.06 2.26 6.62 -2.39 -0.02 2.24 16 44 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 45 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -74.58 398.55 3.97 -70.62 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -0.87 Total: 13.83 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 5.30 Total: -20.67 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -1.29 Total: -82.95 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.05 Total: -21.96 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -1.15 Total: -4.31 kcal Total: -74.58 3.97 -70.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005362334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.522 kcal (2) G-P(sol) polarization free energy of solvation -74.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds