Wall clock time and date at job start Tue Mar 31 2020 06:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86806 * 120.00017 * 2 1 4 4 H 1.48497 * 109.47179 * 240.00308 * 3 2 1 5 5 H 1.48493 * 109.47168 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46641 * 120.00223 * 3 2 1 7 7 C 1.38828 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00269 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00040 * 359.97438 * 7 2 1 10 10 C 1.34764 * 117.00215 * 180.02562 * 9 7 2 11 11 O 1.21544 * 119.99907 * 359.97438 * 10 9 7 12 12 C 1.47382 * 119.99748 * 180.02562 * 10 9 7 13 13 C 1.39565 * 120.24193 * 306.27041 * 12 10 9 14 14 C 1.37922 * 119.99091 * 180.29898 * 13 12 10 15 15 C 1.38603 * 120.47474 * 359.67639 * 14 13 12 16 16 C 1.37947 * 120.48392 * 0.02562 * 15 14 13 17 17 C 1.39505 * 120.00002 * 0.02562 * 16 15 14 18 18 C 1.47448 * 120.23659 * 180.02562 * 17 16 15 19 19 N 1.31455 * 125.59273 * 173.61161 * 18 17 16 20 20 C 1.33568 * 108.87740 * 179.72899 * 19 18 17 21 21 C 1.36211 * 107.70611 * 0.42881 * 20 19 18 22 22 C 1.47693 * 126.51135 * 179.84215 * 21 20 19 23 23 C 1.39648 * 120.15307 * 179.71732 * 22 21 20 24 24 C 1.37941 * 119.84323 * 179.97438 * 23 22 21 25 25 C 1.38367 * 120.15804 * 359.96982 * 24 23 22 26 26 C 1.38378 * 120.30420 * 0.02794 * 25 24 23 27 27 C 1.37937 * 120.14915 * 359.97438 * 26 25 24 28 28 O 1.34526 * 125.59529 * 353.60757 * 18 17 16 29 29 H 0.96997 * 119.99826 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.00440 * 359.97438 * 13 12 10 31 31 H 1.07999 * 119.76554 * 179.70044 * 14 13 12 32 32 H 1.08004 * 119.75275 * 180.02562 * 15 14 13 33 33 H 1.08000 * 119.99996 * 180.02562 * 16 15 14 34 34 H 1.08001 * 126.14975 * 180.27348 * 20 19 18 35 35 H 1.07991 * 120.08024 * 359.97438 * 23 22 21 36 36 H 1.08002 * 119.91985 * 179.97438 * 24 23 22 37 37 H 1.08001 * 119.85226 * 179.74811 * 25 24 23 38 38 H 1.07997 * 119.92450 * 179.97438 * 26 25 24 39 39 H 1.08002 * 120.07924 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1017 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0082 -1.2023 -0.0005 8 1 3.0882 -1.2023 -0.0010 9 8 1.3340 -2.3700 -0.0005 10 6 2.0680 -3.5002 -0.0005 11 8 3.2818 -3.4366 -0.0010 12 6 1.3988 -4.8134 -0.0011 13 6 0.4438 -5.1160 0.9705 14 6 -0.1747 -6.3488 0.9688 15 6 0.1398 -7.2917 0.0029 16 6 1.0763 -7.0110 -0.9703 17 6 1.7149 -5.7709 -0.9868 18 6 2.7164 -5.4651 -2.0249 19 7 3.2925 -4.2985 -2.2122 20 6 4.1454 -4.3971 -3.2354 21 6 4.0851 -5.6748 -3.7034 22 6 4.8563 -6.2347 -4.8317 23 6 4.6937 -7.5727 -5.1971 24 6 5.4168 -8.0889 -6.2523 25 6 6.3012 -7.2842 -6.9486 26 6 6.4672 -5.9575 -6.5920 27 6 5.7506 -5.4283 -5.5389 28 8 3.1904 -6.3343 -2.9358 29 1 -0.4850 0.8400 0.0004 30 1 0.1929 -4.3869 1.7268 31 1 -0.9097 -6.5809 1.7253 32 1 -0.3520 -8.2532 0.0123 33 1 1.3151 -7.7514 -1.7195 34 1 4.7688 -3.6052 -3.6237 35 1 4.0034 -8.2018 -4.6549 36 1 5.2923 -9.1236 -6.5357 37 1 6.8678 -7.6945 -7.7714 38 1 7.1595 -5.3350 -7.1394 39 1 5.8808 -4.3926 -5.2617 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007998244.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:51 Heat of formation + Delta-G solvation = -6.747160 kcal Electronic energy + Delta-G solvation = -27053.756965 eV Core-core repulsion = 23086.193726 eV Total energy + Delta-G solvation = -3967.563239 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.099 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.40787 -41.18719 -40.00156 -39.63067 -37.09923 -35.97997 -34.28370 -34.06784 -32.49522 -32.39600 -31.96864 -29.13444 -27.67814 -25.59834 -25.01539 -24.24220 -23.23589 -22.79787 -21.98776 -21.52902 -19.81463 -19.33792 -18.70014 -17.89668 -17.85102 -17.17209 -16.84833 -16.79830 -16.27033 -16.17824 -15.83532 -15.47709 -15.45181 -14.93293 -14.75676 -14.43177 -14.41559 -14.24377 -14.09651 -13.79617 -13.62235 -13.14689 -12.81406 -12.61643 -12.49560 -12.42782 -12.24655 -12.18271 -12.05387 -12.00560 -11.34761 -11.24280 -10.96641 -10.65786 -10.14272 -10.05082 -9.99081 -8.90244 -8.51763 -6.28019 -0.84191 -0.09148 0.13978 0.38226 1.00730 1.23774 1.30451 1.35130 1.46994 1.68145 1.79589 2.11535 2.60387 2.75460 2.81549 2.88827 3.02364 3.41318 3.70400 3.80158 3.91638 3.96638 4.03006 4.20870 4.24488 4.27304 4.33060 4.40346 4.43475 4.50278 4.71735 4.79340 4.88572 4.93376 5.02031 5.05196 5.16845 5.26681 5.30827 5.36373 5.43694 5.45092 5.49677 5.79458 5.87025 5.93120 6.60318 6.72850 6.92850 7.82211 8.69541 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.010300 B = 0.003637 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.915217 B = 7696.640060 C =10120.720054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.006 4.006 3 Si 1.016 2.984 4 H -0.266 1.266 5 H -0.256 1.256 6 H -0.260 1.260 7 C -0.408 4.408 8 H 0.075 0.925 9 O -0.241 6.241 10 C 0.446 3.554 11 O -0.542 6.542 12 C -0.080 4.080 13 C -0.093 4.093 14 C -0.086 4.086 15 C -0.085 4.085 16 C -0.088 4.088 17 C -0.010 4.010 18 C 0.204 3.796 19 N -0.471 5.471 20 C -0.042 4.042 21 C 0.001 3.999 22 C -0.037 4.037 23 C -0.112 4.112 24 C -0.117 4.117 25 C -0.104 4.104 26 C -0.116 4.116 27 C -0.106 4.106 28 O -0.185 6.185 29 H 0.278 0.722 30 H 0.132 0.868 31 H 0.180 0.820 32 H 0.190 0.810 33 H 0.161 0.839 34 H 0.199 0.801 35 H 0.128 0.872 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.417 -19.919 -10.886 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.205 4.205 3 Si 0.835 3.165 4 H -0.190 1.190 5 H -0.180 1.180 6 H -0.185 1.185 7 C -0.484 4.484 8 H 0.093 0.907 9 O -0.150 6.150 10 C 0.293 3.707 11 O -0.437 6.437 12 C -0.082 4.082 13 C -0.112 4.112 14 C -0.104 4.104 15 C -0.102 4.102 16 C -0.107 4.107 17 C -0.011 4.011 18 C 0.003 3.997 19 N -0.198 5.198 20 C -0.184 4.184 21 C -0.052 4.052 22 C -0.038 4.038 23 C -0.130 4.130 24 C -0.134 4.134 25 C -0.122 4.122 26 C -0.133 4.133 27 C -0.124 4.124 28 O -0.073 6.073 29 H 0.087 0.913 30 H 0.150 0.850 31 H 0.197 0.803 32 H 0.207 0.793 33 H 0.179 0.821 34 H 0.215 0.785 35 H 0.146 0.854 36 H 0.174 0.826 37 H 0.178 0.822 38 H 0.175 0.825 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.413 -19.247 -10.517 22.591 hybrid contribution 0.684 0.938 -0.133 1.169 sum 6.097 -18.309 -10.650 22.041 Atomic orbital electron populations 1.70062 1.07576 1.29235 1.47436 1.26512 0.96911 1.02087 0.95036 0.84726 0.77651 0.74496 0.79668 1.19040 1.17994 1.18452 1.21304 0.91933 0.81139 1.54043 0.90677 1.83969 1.39812 1.13859 1.77355 1.21353 0.86115 0.86124 0.77146 1.90601 1.16087 1.88033 1.49007 1.19277 0.99607 0.90736 0.98576 1.21473 0.93206 0.99345 0.97148 1.21772 0.98434 0.90801 0.99395 1.21779 0.95192 1.01290 0.91941 1.21499 0.95759 0.92992 1.00458 1.17430 0.95715 0.96520 0.91476 1.24009 0.99173 0.83192 0.93365 1.70968 1.09251 1.23600 1.16019 1.23783 1.01698 0.97520 0.95390 1.22054 0.95057 0.91716 0.96405 1.17788 0.97856 0.95428 0.92727 1.21460 0.99999 0.93325 0.98183 1.21452 0.95814 1.01628 0.94533 1.21782 0.97228 0.93510 0.99691 1.21437 0.99245 0.96550 0.96090 1.21344 0.95149 1.00085 0.95831 1.84382 1.45973 1.40164 1.36743 0.91287 0.85039 0.80285 0.79326 0.82120 0.78451 0.85367 0.82577 0.82219 0.82517 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.49 13.67 21.64 0.30 -56.20 16 2 C -0.01 -0.37 5.50 84.90 0.47 0.09 16 3 Si 1.02 46.46 29.55 68.60 2.03 48.49 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 7 C -0.41 -26.86 9.65 67.96 0.66 -26.21 16 8 H 0.08 5.06 6.86 -2.91 -0.02 5.04 16 9 O -0.24 -15.70 9.75 11.23 0.11 -15.59 16 10 C 0.45 25.96 6.09 70.23 0.43 26.39 16 11 O -0.54 -33.93 13.83 19.70 0.27 -33.66 16 12 C -0.08 -3.61 5.79 -19.87 -0.11 -3.73 16 13 C -0.09 -3.31 9.77 22.51 0.22 -3.09 16 14 C -0.09 -1.96 10.02 22.28 0.22 -1.74 16 15 C -0.08 -1.63 10.02 22.29 0.22 -1.41 16 16 C -0.09 -2.33 9.70 22.51 0.22 -2.11 16 17 C -0.01 -0.40 5.90 -19.87 -0.12 -0.51 16 18 C 0.20 8.92 7.67 87.18 0.67 9.59 16 19 N -0.47 -23.59 7.52 -304.23 -2.29 -25.87 16 20 C -0.04 -1.69 11.28 83.96 0.95 -0.74 16 21 C 0.00 0.04 7.07 24.30 0.17 0.21 16 22 C -0.04 -0.98 5.87 -20.10 -0.12 -1.10 16 23 C -0.11 -2.37 9.73 22.54 0.22 -2.15 16 24 C -0.12 -1.71 10.03 22.23 0.22 -1.49 16 25 C -0.10 -1.32 10.04 22.33 0.22 -1.09 16 26 C -0.12 -1.75 10.03 22.23 0.22 -1.53 16 27 C -0.11 -2.29 9.58 22.54 0.22 -2.07 16 28 O -0.19 -6.80 10.33 -12.49 -0.13 -6.93 16 29 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 30 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 31 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.19 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.16 3.28 7.90 -2.91 -0.02 3.26 16 34 H 0.20 6.86 7.29 -2.91 -0.02 6.84 16 35 H 0.13 2.59 7.94 -2.92 -0.02 2.57 16 36 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 37 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 38 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 39 H 0.13 2.69 7.03 -2.91 -0.02 2.67 16 Total: -1.00 -92.82 353.41 6.37 -86.45 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 1.10 Total: 16.01 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 4.98 Total: -12.69 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -1.99 Total: -82.07 kcal Atomic # 8 Polarization: -56.43 SS G_CDS: 0.25 Total: -56.18 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -92.82 6.37 -86.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007998244.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.699 kcal (2) G-P(sol) polarization free energy of solvation -92.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds