Wall clock time and date at job start Tue Mar 31 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86799 * 120.00260 * 2 1 4 4 H 1.48495 * 109.47559 * 270.00434 * 3 2 1 5 5 H 1.48504 * 109.46815 * 30.00600 * 3 2 1 6 6 H 1.48498 * 109.47067 * 149.99915 * 3 2 1 7 7 C 1.39914 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00110 * 196.69756 * 7 2 1 9 9 C 1.41134 * 120.00027 * 16.68743 * 7 2 1 10 10 C 1.40891 * 120.16012 * 25.53813 * 9 7 2 11 11 C 1.36353 * 119.83002 * 180.22745 * 10 9 7 12 12 C 1.39519 * 120.16323 * 359.47839 * 11 10 9 13 13 N 1.39114 * 119.83351 * 180.27661 * 12 11 10 14 14 C 1.34777 * 120.00139 * 34.37898 * 13 12 11 15 15 O 1.21637 * 119.99860 * 5.10825 * 14 13 12 16 16 C 1.47206 * 120.00283 * 185.10775 * 14 13 12 17 17 C 1.38451 * 120.59931 * 359.72513 * 16 14 13 18 18 C 1.41776 * 118.71017 * 179.76245 * 17 16 14 19 19 C 1.40318 * 120.20540 * 180.27059 * 18 17 16 20 20 C 1.36482 * 119.87901 * 180.23034 * 19 18 17 21 21 C 1.38816 * 120.47234 * 359.97438 * 20 19 18 22 22 C 1.37862 * 120.63401 * 359.97438 * 21 20 19 23 23 C 1.39069 * 119.99539 * 0.02825 * 22 21 20 24 24 O 1.35019 * 119.87389 * 179.97438 * 23 22 21 25 25 C 1.34343 * 121.43657 * 179.97438 * 24 23 22 26 26 O 1.21677 * 119.92594 * 180.02562 * 25 24 23 27 27 C 1.39513 * 120.33270 * 0.25592 * 12 11 10 28 28 C 1.36358 * 120.16301 * 359.97438 * 27 12 11 29 29 H 0.96998 * 119.99876 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.08170 * 359.97438 * 10 9 7 31 31 H 1.07999 * 119.91658 * 179.75448 * 11 10 9 32 32 H 0.96997 * 120.00065 * 214.38628 * 13 12 11 33 33 H 1.08003 * 120.64218 * 359.97438 * 17 16 14 34 34 H 1.08006 * 120.05785 * 0.20376 * 19 18 17 35 35 H 1.08002 * 119.76904 * 180.02562 * 20 19 18 36 36 H 1.08003 * 119.68693 * 180.02562 * 21 20 19 37 37 H 1.08005 * 120.00440 * 180.02562 * 22 21 20 38 38 H 1.07993 * 119.92238 * 180.02562 * 27 12 11 39 39 H 1.08001 * 120.08212 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4902 2.0465 -1.4000 5 1 1.4402 2.6526 0.7002 6 1 3.5403 1.4400 0.7000 7 6 2.0083 -1.2117 -0.0005 8 1 3.0541 -1.2315 0.2682 9 6 1.3472 -2.4081 -0.3520 10 6 0.2144 -2.3713 -1.1889 11 6 -0.4219 -3.5308 -1.5205 12 6 0.0527 -4.7524 -1.0420 13 7 -0.5984 -5.9317 -1.3893 14 6 -1.1631 -6.0564 -2.6067 15 8 -1.0243 -5.1761 -3.4345 16 6 -1.9478 -7.2580 -2.9345 17 6 -2.1090 -8.2701 -2.0036 18 6 -2.8771 -9.4072 -2.3601 19 6 -3.0654 -10.4489 -1.4390 20 6 -3.8021 -11.5426 -1.7908 21 6 -4.3684 -11.6331 -3.0550 22 6 -4.1972 -10.6211 -3.9754 23 6 -3.4508 -9.4963 -3.6413 24 8 -3.2843 -8.5069 -4.5448 25 6 -2.5700 -7.4065 -4.2553 26 8 -2.4380 -6.5314 -5.0903 27 6 1.1772 -4.7973 -0.2174 28 6 1.8210 -3.6455 0.1264 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1515 -1.4267 -1.5635 31 1 -1.2927 -3.5038 -2.1587 32 1 -0.6460 -6.6642 -0.7553 33 1 -1.6613 -8.1932 -1.0238 34 1 -2.6278 -10.3854 -0.4536 35 1 -3.9463 -12.3432 -1.0803 36 1 -4.9493 -12.5042 -3.3198 37 1 -4.6427 -10.7019 -4.9560 38 1 1.5391 -5.7466 0.1488 39 1 2.6916 -3.6818 0.7645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008125746.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:36 Heat of formation + Delta-G solvation = -52.522984 kcal Electronic energy + Delta-G solvation = -26600.842697 eV Core-core repulsion = 22631.294469 eV Total energy + Delta-G solvation = -3969.548228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.099 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.02134 -41.21363 -40.00461 -39.07751 -38.27680 -36.31137 -35.88723 -34.62413 -31.99038 -31.51415 -31.30717 -30.53513 -27.19936 -26.09031 -25.36731 -24.08049 -23.40022 -22.94376 -21.74512 -20.46134 -19.65157 -19.23564 -18.71790 -18.03013 -17.97517 -17.41661 -17.06663 -16.45095 -16.22880 -16.08397 -15.80685 -15.74922 -15.17732 -14.91751 -14.67032 -14.61192 -14.47897 -14.26173 -13.95284 -13.67628 -13.36783 -13.25329 -12.92432 -12.85222 -12.80650 -12.42157 -12.41379 -11.78314 -11.74983 -11.60792 -11.49659 -11.21930 -10.91383 -10.67886 -9.85167 -9.54998 -9.47521 -8.88233 -8.61408 -6.28851 -1.22543 0.01373 0.50204 0.77293 1.08253 1.13423 1.25355 1.37634 1.51227 1.52293 2.14126 2.17300 2.20532 2.68632 2.76227 2.82188 3.21848 3.28765 3.71377 3.72678 3.95235 4.18272 4.23072 4.33721 4.39623 4.42738 4.44596 4.53859 4.90091 4.93890 5.00110 5.08194 5.15216 5.26743 5.27943 5.37971 5.39164 5.64209 5.66779 5.83806 5.99924 6.04843 6.08774 6.24537 6.31445 6.63637 6.66587 6.90767 6.98679 7.32309 8.31988 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.027673 B = 0.002292 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.582175 B =12211.986970 C =12861.222904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.029 3.971 3 Si 0.985 3.015 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.251 1.251 7 C -0.491 4.491 8 H 0.084 0.916 9 C 0.074 3.926 10 C -0.182 4.182 11 C -0.101 4.101 12 C 0.006 3.994 13 N -0.629 5.629 14 C 0.550 3.450 15 O -0.562 6.562 16 C -0.296 4.296 17 C 0.095 3.905 18 C -0.187 4.187 19 C -0.029 4.029 20 C -0.141 4.141 21 C -0.030 4.030 22 C -0.156 4.156 23 C 0.127 3.873 24 O -0.277 6.277 25 C 0.517 3.483 26 O -0.486 6.486 27 C -0.091 4.091 28 C -0.221 4.221 29 H 0.287 0.713 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.418 0.582 33 H 0.200 0.800 34 H 0.181 0.819 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.151 0.849 38 H 0.144 0.856 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.163 -28.770 3.379 30.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.186 4.186 3 Si 0.805 3.195 4 H -0.194 1.194 5 H -0.192 1.192 6 H -0.174 1.174 7 C -0.520 4.520 8 H 0.102 0.898 9 C 0.072 3.928 10 C -0.202 4.202 11 C -0.121 4.121 12 C -0.088 4.088 13 N -0.275 5.275 14 C 0.339 3.661 15 O -0.441 6.441 16 C -0.301 4.301 17 C 0.076 3.924 18 C -0.188 4.188 19 C -0.046 4.046 20 C -0.159 4.159 21 C -0.048 4.048 22 C -0.174 4.174 23 C 0.083 3.917 24 O -0.188 6.188 25 C 0.365 3.635 26 O -0.373 6.373 27 C -0.110 4.110 28 C -0.241 4.241 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.257 0.743 33 H 0.216 0.784 34 H 0.198 0.802 35 H 0.193 0.807 36 H 0.195 0.805 37 H 0.169 0.831 38 H 0.162 0.838 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.317 -27.599 2.223 29.214 hybrid contribution 0.104 1.349 -0.418 1.416 sum -9.213 -26.250 1.805 27.879 Atomic orbital electron populations 1.69916 1.09215 1.30527 1.35605 1.26869 0.95505 1.04904 0.91322 0.85160 0.79292 0.75734 0.79267 1.19357 1.19220 1.17412 1.19845 0.98133 0.92160 1.41845 0.89805 1.18029 0.91741 0.93939 0.89133 1.20857 1.00698 0.96330 1.02328 1.20437 0.99075 0.92756 0.99856 1.17146 0.98549 0.84552 1.08506 1.42496 1.54422 1.16240 1.14389 1.17906 0.80043 0.86092 0.82064 1.90873 1.60885 1.43281 1.49012 1.21806 1.11806 1.00045 0.96442 1.22904 0.84692 0.86610 0.98229 1.18342 1.06174 0.99178 0.95132 1.21624 0.94117 0.89925 0.98945 1.21497 0.97560 0.99333 0.97471 1.21844 0.94177 0.96945 0.91840 1.21000 1.01307 0.91619 1.03493 1.19985 0.96720 0.87471 0.87523 1.83655 1.62995 1.27300 1.44879 1.20299 0.76339 0.79101 0.87782 1.91017 1.57871 1.36652 1.51751 1.20408 0.92932 0.98666 0.99044 1.20855 1.04119 0.92369 1.06785 0.90251 0.88852 0.90020 0.74262 0.78357 0.80188 0.80721 0.80542 0.83095 0.83831 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.72 10.95 21.82 0.24 -45.48 16 2 C 0.03 1.50 5.15 85.24 0.44 1.94 16 3 Si 0.98 39.79 29.59 68.60 2.03 41.82 16 4 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 6 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 7 C -0.49 -27.06 9.04 23.39 0.21 -26.85 16 8 H 0.08 4.35 7.90 -2.91 -0.02 4.33 16 9 C 0.07 4.15 5.57 -21.27 -0.12 4.04 16 10 C -0.18 -10.64 8.63 22.48 0.19 -10.44 16 11 C -0.10 -5.49 8.57 22.14 0.19 -5.30 16 12 C 0.01 0.26 6.27 38.60 0.24 0.50 16 13 N -0.63 -21.65 5.25 -306.24 -1.61 -23.25 16 14 C 0.55 22.03 7.48 86.60 0.65 22.68 16 15 O -0.56 -29.97 13.17 15.76 0.21 -29.76 16 16 C -0.30 -9.00 6.05 -18.64 -0.11 -9.11 16 17 C 0.09 1.54 9.36 23.20 0.22 1.76 16 18 C -0.19 -2.50 5.74 -21.31 -0.12 -2.62 16 19 C -0.03 -0.12 9.72 22.37 0.22 0.10 16 20 C -0.14 -0.18 9.97 22.00 0.22 0.04 16 21 C -0.03 -0.10 10.02 22.32 0.22 0.13 16 22 C -0.16 -1.69 9.98 22.38 0.22 -1.46 16 23 C 0.13 2.34 6.75 23.06 0.16 2.49 16 24 O -0.28 -7.87 9.80 13.51 0.13 -7.74 16 25 C 0.52 18.76 8.13 70.05 0.57 19.33 16 26 O -0.49 -23.00 16.30 25.99 0.42 -22.57 16 27 C -0.09 -3.74 9.90 22.14 0.22 -3.52 16 28 C -0.22 -10.57 9.74 22.48 0.22 -10.35 16 29 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 30 H 0.09 5.82 6.18 -2.91 -0.02 5.80 16 31 H 0.08 4.68 6.46 -2.91 -0.02 4.66 16 32 H 0.42 9.10 6.90 -92.71 -0.64 8.46 16 33 H 0.20 1.28 6.47 -2.91 -0.02 1.26 16 34 H 0.18 -0.56 8.06 -2.91 -0.02 -0.59 16 35 H 0.18 -0.94 8.06 -2.91 -0.02 -0.96 16 36 H 0.18 -0.64 8.06 -2.91 -0.02 -0.66 16 37 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 39 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -91.25 343.00 5.75 -85.50 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.49 Total: 18.14 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 3.83 Total: -16.66 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: -1.37 Total: -68.73 kcal Atomic # 8 Polarization: -60.83 SS G_CDS: 0.76 Total: -60.07 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -91.25 5.75 -85.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008125746.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.977 kcal (2) G-P(sol) polarization free energy of solvation -91.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds