Wall clock time and date at job start Tue Mar 31 2020 05:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.38571 * 119.97032 * 2 1 4 4 N 1.33398 * 133.64539 * 359.97438 * 3 2 1 5 5 C 1.31762 * 109.96555 * 180.02562 * 4 3 2 6 6 N 1.37601 * 125.30321 * 179.97438 * 5 4 3 7 7 C 1.47845 * 110.99881 * 239.17989 * 6 5 4 8 8 C 1.54908 * 104.79717 * 146.36170 * 7 6 5 9 9 C 1.55147 * 101.65049 * 322.93105 * 8 7 6 10 10 C 1.47439 * 110.99748 * 0.02562 * 6 5 4 11 11 N 1.35935 * 109.39423 * 0.23820 * 5 4 3 12 12 C 1.46494 * 126.63098 * 179.75437 * 11 5 4 13 13 C 1.50702 * 109.47058 * 90.00264 * 12 11 5 14 14 H 1.08002 * 119.99484 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99866 * 179.97438 * 13 12 11 16 16 N 1.31506 * 120.00363 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99711 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47073 * 60.00279 * 17 15 13 19 19 H 1.48498 * 109.47027 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47273 * 300.00142 * 17 15 13 21 21 C 1.38848 * 106.73093 * 359.62284 * 11 5 4 22 22 C 1.40604 * 134.41778 * 180.02562 * 21 11 5 23 23 O 1.21869 * 120.35456 * 0.31954 * 22 21 11 24 24 N 1.34913 * 119.30025 * 180.32257 * 22 21 11 25 25 C 1.46506 * 119.50342 * 180.02562 * 24 22 21 26 26 C 1.34421 * 120.99766 * 0.02562 * 24 22 21 27 27 O 1.21602 * 119.18997 * 179.97438 * 26 24 22 28 28 H 1.09002 * 109.47650 * 89.99837 * 1 2 3 29 29 H 1.09005 * 109.47041 * 209.99871 * 1 2 3 30 30 H 1.08998 * 109.47371 * 329.99771 * 1 2 3 31 31 H 1.09005 * 110.37246 * 27.53127 * 7 6 5 32 32 H 1.08998 * 110.37354 * 265.19364 * 7 6 5 33 33 H 1.08996 * 110.99351 * 204.83721 * 8 7 6 34 34 H 1.09002 * 110.98650 * 81.01419 * 8 7 6 35 35 H 1.09000 * 110.70281 * 154.03642 * 9 8 7 36 36 H 1.09000 * 110.70143 * 277.26807 * 9 8 7 37 37 H 1.09003 * 109.88723 * 117.34088 * 10 6 5 38 38 H 1.08999 * 109.89041 * 356.15478 * 10 6 5 39 39 H 1.09002 * 109.47240 * 210.00290 * 12 11 5 40 40 H 1.09001 * 109.47264 * 330.00564 * 12 11 5 41 41 H 0.96999 * 120.00561 * 180.02562 * 16 15 13 42 42 H 1.08987 * 109.47117 * 179.97438 * 25 24 22 43 43 H 1.09001 * 109.46906 * 299.97860 * 25 24 22 44 44 H 1.09006 * 109.47037 * 59.97245 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1572 1.2004 0.0000 4 7 1.7809 2.4802 -0.0004 5 6 2.8421 3.2612 -0.0007 6 7 2.8170 4.6370 -0.0017 7 6 3.5146 5.1788 -1.1873 8 6 2.7388 6.4704 -1.5469 9 6 1.2769 6.0549 -1.2350 10 6 1.4311 5.1401 -0.0018 11 7 3.9657 2.4960 -0.0059 12 6 5.3498 2.9757 -0.0129 13 6 5.8315 3.1409 1.4055 14 1 5.1724 2.9111 2.2297 15 6 7.1137 3.5844 1.6508 16 7 7.9162 3.8637 0.6472 17 14 7.7109 3.7885 3.4090 18 1 7.6433 2.4808 4.1097 19 1 9.1144 4.2736 3.4019 20 1 6.8500 4.7724 4.1132 21 6 3.5476 1.1720 0.0000 22 6 4.2089 -0.0688 -0.0007 23 8 5.4266 -0.1176 -0.0017 24 7 3.4812 -1.2048 -0.0001 25 6 4.1658 -2.5001 -0.0002 26 6 2.1376 -1.1663 0.0004 27 8 1.5143 -2.2104 0.0004 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 3.4700 4.4673 -2.0119 32 1 4.5507 5.4138 -0.9435 33 1 2.8581 6.7167 -2.6020 34 1 3.0514 7.3022 -0.9156 35 1 0.6712 6.9284 -0.9936 36 1 0.8458 5.5049 -2.0715 37 1 1.2434 5.7098 0.9084 38 1 0.7335 4.3053 -0.0698 39 1 5.9820 2.2535 -0.5295 40 1 5.3992 3.9354 -0.5274 41 1 8.8184 4.1754 0.8198 42 1 3.4270 -3.3014 0.0007 43 1 4.7891 -2.5816 -0.8907 44 1 4.7906 -2.5809 0.8893 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012645913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:17 Heat of formation + Delta-G solvation = 45.274307 kcal Electronic energy + Delta-G solvation = -30288.975830 eV Core-core repulsion = 26244.089567 eV Total energy + Delta-G solvation = -4044.886263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.54524 -40.90862 -38.72505 -38.44268 -36.06285 -34.91881 -33.96528 -32.22698 -31.88742 -29.79673 -28.86899 -27.52321 -26.85959 -26.44736 -23.71434 -23.25053 -22.67598 -21.72687 -21.15036 -19.64535 -18.86528 -17.91750 -17.12338 -16.84070 -16.65558 -16.36037 -15.85041 -15.32448 -14.99592 -14.96475 -14.81477 -14.59014 -14.35028 -13.64127 -13.45965 -13.29745 -13.02317 -12.75810 -12.63598 -12.39224 -12.29432 -12.23282 -12.08689 -11.91559 -11.28986 -11.22745 -11.08023 -10.90822 -10.77124 -10.62370 -10.56882 -10.32212 -10.04265 -9.88237 -9.60500 -9.50266 -9.14102 -8.64177 -8.59343 -7.29639 -6.25539 -4.30934 1.46563 2.01539 2.27691 2.79252 2.95127 3.25370 3.28455 3.30532 3.36763 3.84874 4.01486 4.30163 4.46389 4.65365 4.77504 4.86565 5.00710 5.10640 5.28046 5.34648 5.41165 5.43251 5.46859 5.52382 5.53743 5.69500 5.73790 5.74812 5.81949 5.84788 5.86155 5.90714 6.06640 6.08952 6.17224 6.24898 6.65849 6.69829 6.87852 6.98739 7.25408 7.49940 7.62358 7.75851 7.83842 7.89622 8.03893 8.32334 8.69411 9.33894 10.83400 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.008604 B = 0.006126 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3253.572127 B = 4569.717344 C = 7089.669129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.510 5.510 3 C 0.304 3.696 4 N -0.535 5.535 5 C 0.450 3.550 6 N -0.435 5.435 7 C 0.041 3.959 8 C -0.126 4.126 9 C -0.140 4.140 10 C 0.044 3.956 11 N -0.376 5.376 12 C 0.231 3.769 13 C -0.527 4.527 14 H 0.062 0.938 15 C 0.070 3.930 16 N -0.890 5.890 17 Si 0.906 3.094 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.141 4.141 22 C 0.586 3.414 23 O -0.490 6.490 24 N -0.557 5.557 25 C 0.087 3.913 26 C 0.711 3.289 27 O -0.556 6.556 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.268 0.732 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.349 -0.199 -4.990 14.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.238 5.238 3 C 0.070 3.930 4 N -0.266 5.266 5 C 0.096 3.904 6 N -0.157 5.157 7 C -0.085 4.085 8 C -0.165 4.165 9 C -0.178 4.178 10 C -0.083 4.083 11 N -0.056 5.056 12 C 0.114 3.886 13 C -0.566 4.566 14 H 0.080 0.920 15 C -0.133 4.133 16 N -0.528 5.528 17 Si 0.733 3.267 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.199 1.199 21 C -0.261 4.261 22 C 0.380 3.620 23 O -0.364 6.364 24 N -0.302 5.302 25 C -0.054 4.054 26 C 0.413 3.587 27 O -0.432 6.432 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.118 0.882 43 H 0.095 0.905 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.111 -0.263 -4.597 13.896 hybrid contribution 0.948 -0.254 0.474 1.090 sum -12.163 -0.516 -4.123 12.853 Atomic orbital electron populations 1.21820 0.75192 1.04417 1.03130 1.43639 1.08229 1.01110 1.70810 1.17772 0.87217 0.86747 1.01262 1.69543 1.28152 0.98331 1.30588 1.20613 0.80967 0.89478 0.99296 1.59912 1.16808 0.99436 1.39538 1.23328 1.00291 0.95757 0.89098 1.22727 0.94458 0.97374 1.01899 1.22795 0.97225 0.99721 0.98084 1.22944 0.87099 0.99465 0.98792 1.45581 1.09706 1.02045 1.48298 1.20204 0.71364 0.96800 1.00220 1.21031 0.98679 1.46362 0.90480 0.91969 1.24836 0.95902 0.94556 0.98039 1.69888 1.07774 1.44234 1.30911 0.86421 0.77731 0.78776 0.83815 1.20029 1.20908 1.19882 1.18562 0.92400 0.87199 1.27902 1.15405 0.86987 0.82208 0.77369 1.90976 1.12055 1.86724 1.46602 1.45844 1.05743 1.09821 1.68800 1.21853 0.97852 0.81930 1.03788 1.15412 0.81592 0.83266 0.78399 1.90947 1.66191 1.29399 1.56653 0.91577 0.89457 0.89405 0.92755 0.87691 0.90303 0.89999 0.90297 0.91243 0.89696 0.88551 0.92007 0.92292 0.92222 0.88217 0.90500 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.16 10.39 59.84 0.62 1.79 16 2 N -0.51 -8.36 3.06 -128.30 -0.39 -8.75 16 3 C 0.30 5.71 7.63 -154.61 -1.18 4.53 16 4 N -0.54 -9.79 9.26 -12.75 -0.12 -9.91 16 5 C 0.45 8.79 6.84 -320.32 -2.19 6.60 16 6 N -0.43 -7.42 5.16 -171.63 -0.89 -8.31 16 7 C 0.04 0.62 5.41 -2.30 -0.01 0.61 16 8 C -0.13 -1.39 7.08 -24.59 -0.17 -1.56 16 9 C -0.14 -1.42 6.94 -24.90 -0.17 -1.60 16 10 C 0.04 0.58 6.81 -2.83 -0.02 0.56 16 11 N -0.38 -8.37 2.81 -116.17 -0.33 -8.70 16 12 C 0.23 5.78 5.52 -5.20 -0.03 5.75 16 13 C -0.53 -14.52 9.39 -34.44 -0.32 -14.84 16 14 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 15 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 16 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 17 Si 0.91 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.14 -3.04 6.91 -83.48 -0.58 -3.62 16 22 C 0.59 12.44 7.42 -15.31 -0.11 12.33 16 23 O -0.49 -11.88 15.99 5.04 0.08 -11.80 16 24 N -0.56 -9.88 2.96 -131.80 -0.39 -10.27 16 25 C 0.09 1.22 9.99 59.85 0.60 1.82 16 26 C 0.71 12.21 8.12 -87.37 -0.71 11.50 16 27 O -0.56 -9.68 15.02 5.28 0.08 -9.60 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.98 7.38 -51.93 -0.38 0.60 16 30 H 0.09 0.99 8.00 -51.93 -0.42 0.57 16 31 H 0.05 0.83 7.79 -51.93 -0.40 0.43 16 32 H 0.11 1.78 6.48 -51.93 -0.34 1.44 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.10 1.33 6.23 -51.93 -0.32 1.00 16 39 H 0.06 1.71 7.28 -51.93 -0.38 1.33 16 40 H 0.06 1.43 5.12 -51.93 -0.27 1.17 16 41 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.10 1.24 6.80 -51.94 -0.35 0.89 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 358.65 15.07 5.40 5.40 Total: -1.00 -32.41 358.65 -11.00 -43.41 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.79 Total: 0.65 kcal Atomic # 6 Polarization: 30.08 SS G_CDS: -4.38 Total: 25.70 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -1.38 Total: -70.22 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: 0.16 Total: -21.40 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.41 -11.00 -43.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012645913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.680 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds