Wall clock time and date at job start Tue Mar 31 2020 05:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86802 * 119.99930 * 2 1 4 4 H 1.48503 * 109.47099 * 270.00015 * 3 2 1 5 5 H 1.48500 * 109.47268 * 30.00081 * 3 2 1 6 6 H 1.48500 * 109.47228 * 150.00307 * 3 2 1 7 7 C 1.38626 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00148 * 359.97438 * 7 2 1 9 9 O 1.34811 * 120.00248 * 179.97438 * 7 2 1 10 10 C 1.35779 * 117.00326 * 185.40004 * 9 7 2 11 11 C 1.38910 * 119.99738 * 186.20993 * 10 9 7 12 12 C 1.37992 * 120.00261 * 180.25703 * 11 10 9 13 13 C 1.38945 * 119.99459 * 359.44334 * 12 11 10 14 14 N 1.39906 * 120.00334 * 180.29973 * 13 12 11 15 15 C 1.34773 * 119.99672 * 33.70119 * 14 13 12 16 16 O 1.21618 * 120.00656 * 5.21944 * 15 14 13 17 17 C 1.47405 * 119.99674 * 185.22697 * 15 14 13 18 18 C 1.38764 * 120.33211 * 359.71798 * 17 15 14 19 19 C 1.38862 * 120.72371 * 179.78730 * 18 17 15 20 20 C 1.36358 * 121.05649 * 0.50347 * 19 18 17 21 21 C 1.40442 * 120.09001 * 359.73903 * 20 19 18 22 22 C 1.40805 * 121.25765 * 180.02562 * 21 20 19 23 23 C 1.36627 * 118.15056 * 180.02562 * 22 21 20 24 24 C 1.39229 * 119.91038 * 359.97438 * 23 22 21 25 25 N 1.31230 * 121.69475 * 0.05116 * 24 23 22 26 26 C 1.33345 * 121.35818 * 359.90231 * 25 24 23 27 27 C 1.38945 * 119.99394 * 0.28410 * 13 12 11 28 28 C 1.37989 * 119.99315 * 359.97438 * 27 13 12 29 29 H 0.97003 * 119.99868 * 359.97438 * 1 2 3 30 30 H 1.08008 * 120.00210 * 0.02562 * 11 10 9 31 31 H 1.08002 * 120.00486 * 179.72176 * 12 11 10 32 32 H 0.97000 * 120.00228 * 213.70342 * 14 13 12 33 33 H 1.07999 * 119.63824 * 0.02562 * 18 17 15 34 34 H 1.07997 * 119.47495 * 180.24205 * 19 18 17 35 35 H 1.07999 * 119.95664 * 179.76657 * 20 19 18 36 36 H 1.07997 * 120.92435 * 0.02562 * 22 21 20 37 37 H 1.08006 * 120.04368 * 179.97438 * 23 22 21 38 38 H 1.08006 * 119.15567 * 179.97438 * 24 23 22 39 39 H 1.08001 * 120.00019 * 180.02562 * 27 13 12 40 40 H 1.08001 * 119.99881 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4402 0.7000 7 6 2.0089 -1.2005 -0.0005 8 1 1.4689 -2.1358 -0.0005 9 8 3.3570 -1.2006 -0.0011 10 6 3.9734 -2.4050 -0.1154 11 6 5.3544 -2.4927 0.0065 12 6 5.9814 -3.7159 -0.1150 13 6 5.2304 -4.8614 -0.3477 14 7 5.8654 -6.1026 -0.4647 15 6 6.9723 -6.3639 0.2584 16 8 7.3649 -5.5594 1.0817 17 6 7.7072 -7.6248 0.0513 18 6 7.2622 -8.5501 -0.8821 19 6 7.9506 -9.7385 -1.0869 20 6 9.0736 -10.0332 -0.3718 21 6 9.5560 -9.1270 0.5866 22 6 10.7134 -9.4059 1.3384 23 6 11.1260 -8.4797 2.2542 24 6 10.4058 -7.2999 2.4211 25 7 9.3274 -7.0450 1.7181 26 6 8.8727 -7.9069 0.8079 27 6 3.8485 -4.7743 -0.4640 28 6 3.2223 -3.5502 -0.3478 29 1 -0.4850 0.8401 0.0004 30 1 5.9377 -1.6030 0.1926 31 1 7.0556 -3.7835 -0.0248 32 1 5.5091 -6.7750 -1.0662 33 1 6.3728 -8.3420 -1.4583 34 1 7.5885 -10.4426 -1.8214 35 1 9.5931 -10.9644 -0.5429 36 1 11.2599 -10.3264 1.1951 37 1 12.0096 -8.6625 2.8478 38 1 10.7426 -6.5763 3.1488 39 1 3.2646 -5.6647 -0.6445 40 1 2.1482 -3.4824 -0.4377 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019600211.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:16 Heat of formation + Delta-G solvation = 40.326479 kcal Electronic energy + Delta-G solvation = -26280.213003 eV Core-core repulsion = 22412.409692 eV Total energy + Delta-G solvation = -3867.803311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.110 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.29671 -39.89865 -38.71494 -37.30797 -36.51539 -34.01819 -33.69944 -32.30223 -30.90954 -30.64113 -30.26265 -28.00405 -25.37606 -24.84651 -23.82642 -23.55966 -22.31987 -21.29752 -20.15147 -18.62385 -18.26743 -17.74434 -17.38890 -17.13878 -16.46559 -16.10430 -15.18678 -15.09796 -14.73604 -14.58948 -14.28425 -14.27636 -13.88690 -13.73648 -13.54452 -13.38691 -13.30938 -12.75693 -12.48756 -12.31096 -12.24697 -12.07459 -11.77267 -11.73793 -11.58226 -10.91493 -10.82233 -10.73066 -10.16046 -10.00491 -9.57525 -9.40277 -9.21111 -9.17627 -8.73877 -8.63591 -8.25015 -6.99331 -6.38943 -4.04210 -0.19856 0.45792 1.41412 2.09953 2.17307 2.47046 3.18808 3.21063 3.27166 3.29238 3.44900 3.89385 3.96147 4.18611 4.27259 4.34168 4.43284 4.51951 4.53829 4.63395 4.73154 4.91021 4.95058 5.07823 5.11808 5.27459 5.49117 5.52405 5.54133 5.65705 5.75701 5.77927 5.92901 6.08593 6.10111 6.15813 6.25833 6.41100 6.71956 6.79044 6.97798 7.13373 7.26982 7.62227 7.67013 7.77664 7.81723 8.05632 8.41974 8.96696 9.59927 10.68727 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.026838 B = 0.002234 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.061795 B =12531.823731 C =13350.004192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.062 3.938 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.387 4.387 8 H 0.106 0.894 9 O -0.217 6.217 10 C 0.151 3.849 11 C -0.175 4.175 12 C -0.069 4.069 13 C 0.051 3.949 14 N -0.662 5.662 15 C 0.544 3.456 16 O -0.481 6.481 17 C -0.102 4.102 18 C -0.065 4.065 19 C -0.125 4.125 20 C -0.073 4.073 21 C -0.112 4.112 22 C -0.060 4.060 23 C -0.174 4.174 24 C 0.133 3.867 25 N -0.436 5.436 26 C 0.162 3.838 27 C -0.093 4.093 28 C -0.205 4.205 29 H 0.279 0.721 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.399 0.601 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.161 0.839 39 H 0.113 0.887 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.241 -23.167 -1.620 30.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.463 4.463 8 H 0.123 0.877 9 O -0.122 6.122 10 C 0.099 3.901 11 C -0.195 4.195 12 C -0.089 4.089 13 C -0.042 4.042 14 N -0.308 5.308 15 C 0.330 3.670 16 O -0.354 6.354 17 C -0.106 4.106 18 C -0.086 4.086 19 C -0.143 4.143 20 C -0.092 4.092 21 C -0.114 4.114 22 C -0.086 4.086 23 C -0.194 4.194 24 C -0.040 4.040 25 N -0.143 5.143 26 C 0.039 3.961 27 C -0.114 4.114 28 C -0.225 4.225 29 H 0.089 0.911 30 H 0.139 0.861 31 H 0.144 0.856 32 H 0.234 0.766 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.178 0.822 39 H 0.131 0.869 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 19.887 -21.432 -0.932 29.252 hybrid contribution 0.366 -0.644 -0.458 0.871 sum 20.253 -22.076 -1.389 29.991 Atomic orbital electron populations 1.69656 1.05554 1.28451 1.48193 1.24464 0.95036 0.98856 0.95720 0.86179 0.80415 0.81400 0.78929 1.19929 1.20819 1.18261 1.20748 0.76967 0.96582 1.52007 0.87684 1.83596 1.22516 1.25622 1.80461 1.19157 0.91618 0.85684 0.93662 1.20116 0.91864 0.97719 1.09798 1.20620 0.99456 0.90170 0.98696 1.17259 0.91140 0.84113 1.11656 1.43184 1.27940 1.15684 1.44025 1.17943 0.81076 0.86361 0.81606 1.90877 1.65676 1.47074 1.31788 1.19943 0.96003 0.95989 0.98624 1.21486 0.98879 0.92872 0.95321 1.20840 0.95846 0.97163 1.00461 1.21167 0.95877 0.98310 0.93837 1.18841 0.97353 0.95928 0.99256 1.21456 0.94114 0.99252 0.93779 1.21988 1.01889 0.95630 0.99930 1.23232 0.89836 0.95090 0.95833 1.68352 1.11799 1.30002 1.04105 1.18619 0.93799 0.89952 0.93770 1.20523 0.91721 0.97480 1.01633 1.21088 1.01130 0.91651 1.08607 0.91098 0.86111 0.85556 0.76595 0.84660 0.84687 0.84843 0.84255 0.84387 0.82173 0.86886 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.58 13.96 55.48 0.77 -24.80 16 2 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 21.99 28.62 -169.99 -4.86 17.12 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.39 -11.00 9.90 30.88 0.31 -10.70 16 8 H 0.11 3.02 5.52 -52.49 -0.29 2.73 16 9 O -0.22 -5.82 8.58 0.01 0.00 -5.82 16 10 C 0.15 3.58 6.65 -39.08 -0.26 3.32 16 11 C -0.18 -3.73 9.98 -39.42 -0.39 -4.12 16 12 C -0.07 -1.36 8.64 -39.41 -0.34 -1.70 16 13 C 0.05 0.91 6.27 -83.65 -0.52 0.38 16 14 N -0.66 -9.47 5.28 -10.80 -0.06 -9.52 16 15 C 0.54 8.58 7.50 -12.53 -0.09 8.49 16 16 O -0.48 -9.49 12.89 5.26 0.07 -9.42 16 17 C -0.10 -1.28 5.91 -104.62 -0.62 -1.90 16 18 C -0.06 -0.55 9.51 -39.16 -0.37 -0.92 16 19 C -0.13 -0.81 9.93 -40.03 -0.40 -1.21 16 20 C -0.07 -0.49 9.75 -39.43 -0.38 -0.88 16 21 C -0.11 -1.05 5.74 -106.82 -0.61 -1.67 16 22 C -0.06 -0.43 9.90 -39.19 -0.39 -0.81 16 23 C -0.17 -1.26 10.03 -39.80 -0.40 -1.66 16 24 C 0.13 1.35 11.15 -17.44 -0.19 1.16 16 25 N -0.44 -6.25 8.44 -10.76 -0.09 -6.34 16 26 C 0.16 2.10 6.61 -84.58 -0.56 1.54 16 27 C -0.09 -1.69 9.96 -39.41 -0.39 -2.08 16 28 C -0.21 -4.44 9.12 -39.42 -0.36 -4.80 16 29 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 31 H 0.13 2.45 6.43 -52.49 -0.34 2.12 16 32 H 0.40 4.09 6.86 -40.82 -0.28 3.81 16 33 H 0.14 0.79 6.38 -52.49 -0.33 0.45 16 34 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 35 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.14 0.55 8.06 -52.48 -0.42 0.12 16 38 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.14 3.07 5.71 -52.49 -0.30 2.77 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -35.63 346.75 -8.66 -44.29 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -3.64 Total: 5.17 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -6.08 Total: -15.91 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.63 Total: -40.66 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.07 Total: -15.24 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.86 Total: 17.12 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.63 -8.66 -44.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019600211.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.618 kcal (2) G-P(sol) polarization free energy of solvation -35.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds