Wall clock time and date at job start Tue Mar 31 2020 04:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86804 * 120.00057 * 2 1 4 4 H 1.48504 * 109.46790 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47086 * 300.00050 * 3 2 1 6 6 H 1.48505 * 109.46991 * 60.00244 * 3 2 1 7 7 C 1.38647 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99531 * 179.97438 * 7 2 1 9 9 O 1.34799 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.35610 * 117.00235 * 185.07240 * 9 7 2 11 11 C 1.38728 * 120.15356 * 354.41927 * 10 9 7 12 12 C 1.38114 * 120.07857 * 180.27912 * 11 10 9 13 13 C 1.38526 * 120.41072 * 359.72573 * 12 11 10 14 14 C 1.37886 * 120.31310 * 359.97438 * 13 12 11 15 15 C 1.39682 * 119.90979 * 0.02562 * 14 13 12 16 16 C 1.47304 * 120.19915 * 180.02562 * 15 14 13 17 17 N 1.29850 * 119.99660 * 180.02562 * 16 15 14 18 18 N 1.40103 * 119.99484 * 179.97438 * 17 16 15 19 19 C 1.34775 * 119.99719 * 180.02562 * 18 17 16 20 20 O 1.21313 * 119.99794 * 359.97438 * 19 18 17 21 21 C 1.50700 * 120.00119 * 179.72430 * 19 18 17 22 22 N 1.46900 * 109.47176 * 180.27399 * 21 19 18 23 23 C 1.47011 * 111.00136 * 293.63440 * 22 21 19 24 24 C 1.53095 * 109.26104 * 177.61137 * 23 22 21 25 25 O 1.43010 * 109.25926 * 56.84387 * 24 23 22 26 26 C 1.43012 * 113.74399 * 301.33628 * 25 24 23 27 27 C 1.47016 * 110.99798 * 170.00157 * 22 21 19 28 28 H 0.97005 * 120.00122 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.96278 * 359.97438 * 11 10 9 30 30 H 1.07999 * 119.79692 * 179.74400 * 12 11 10 31 31 H 1.07999 * 119.84057 * 180.02562 * 13 12 11 32 32 H 1.07997 * 120.04427 * 179.97438 * 14 13 12 33 33 H 1.08001 * 119.99899 * 359.97438 * 16 15 14 34 34 H 0.96998 * 120.00210 * 359.97438 * 18 17 16 35 35 H 1.08998 * 109.46935 * 300.28039 * 21 19 18 36 36 H 1.09001 * 109.46927 * 60.27277 * 21 19 18 37 37 H 1.09005 * 109.50582 * 297.54789 * 23 22 21 38 38 H 1.08998 * 109.50515 * 57.67324 * 23 22 21 39 39 H 1.09003 * 109.50025 * 296.91249 * 24 23 22 40 40 H 1.08994 * 109.54723 * 176.81067 * 24 23 22 41 41 H 1.09006 * 109.50629 * 298.73523 * 26 25 24 42 42 H 1.08996 * 109.54810 * 178.62336 * 26 25 24 43 43 H 1.08999 * 109.50641 * 302.32351 * 27 22 21 44 44 H 1.09000 * 109.50841 * 62.41495 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3964 1.2126 7 6 2.0088 -1.2007 0.0005 8 1 3.0887 -1.2007 0.0001 9 8 1.3347 -2.3681 0.0005 10 6 2.0691 -3.5031 0.1079 11 6 3.4549 -3.4403 0.0950 12 6 4.2013 -4.5978 0.1987 13 6 3.5751 -5.8272 0.3217 14 6 2.1987 -5.9083 0.3426 15 6 1.4309 -4.7460 0.2386 16 6 -0.0398 -4.8252 0.2607 17 7 -0.7497 -3.7423 0.1634 18 7 -2.1486 -3.8176 0.1839 19 6 -2.8855 -2.6938 0.0823 20 8 -2.3375 -1.6169 -0.0264 21 6 -4.3902 -2.7753 0.0980 22 7 -4.9551 -1.4256 -0.0323 23 6 -4.6434 -0.6076 1.1488 24 6 -5.1979 0.8049 0.9455 25 8 -6.6039 0.7282 0.6956 26 6 -6.9434 -0.0604 -0.4481 27 6 -6.4066 -1.4816 -0.2588 28 1 -0.4850 0.8401 -0.0004 29 1 3.9507 -2.4856 -0.0011 30 1 5.2798 -4.5440 0.1840 31 1 4.1677 -6.7265 0.4026 32 1 1.7151 -6.8691 0.4382 33 1 -0.5276 -5.7839 0.3571 34 1 -2.5867 -4.6787 0.2704 35 1 -4.7293 -3.3931 -0.7335 36 1 -4.7202 -3.2181 1.0378 37 1 -5.1003 -1.0544 2.0318 38 1 -3.5628 -0.5586 1.2827 39 1 -4.7019 1.2715 0.0943 40 1 -5.0192 1.3992 1.8414 41 1 -6.4982 0.3811 -1.3398 42 1 -8.0271 -0.0926 -0.5602 43 1 -6.6131 -2.0706 -1.1524 44 1 -6.8917 -1.9430 0.6014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019851649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:05 Heat of formation + Delta-G solvation = -1.413936 kcal Electronic energy + Delta-G solvation = -28671.822507 eV Core-core repulsion = 24592.618938 eV Total energy + Delta-G solvation = -4079.203568 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.79754 -38.96543 -38.42344 -36.31311 -35.82755 -35.00111 -32.31687 -31.97198 -31.11977 -29.88480 -28.95736 -28.16325 -25.24653 -24.98057 -23.98180 -22.84019 -21.47461 -20.50357 -19.92969 -19.85326 -17.81961 -17.22893 -16.66172 -16.33101 -16.11297 -15.97214 -15.40935 -15.02534 -14.84506 -14.44283 -14.37242 -14.17798 -14.01184 -13.70890 -13.53915 -13.43213 -12.96404 -12.60017 -12.46078 -12.32193 -12.07925 -11.67172 -11.54471 -11.35701 -11.27378 -10.97769 -10.76819 -10.74965 -10.62599 -10.51287 -10.33908 -9.76458 -9.45798 -9.13580 -8.89264 -8.84417 -8.65334 -8.30713 -7.65181 -6.90876 -6.15927 -3.80062 1.72805 2.48454 3.00145 3.02876 3.21645 3.22812 3.27352 3.65178 3.80703 3.94106 4.07826 4.74242 4.80649 4.88620 5.00003 5.10972 5.20554 5.23796 5.26036 5.31505 5.34530 5.39309 5.40755 5.53614 5.60498 5.67303 5.73384 5.76716 5.92426 6.03172 6.10351 6.16343 6.30011 6.54900 6.77451 6.83422 6.91282 6.94463 7.16704 7.18355 7.28695 7.43986 7.47605 7.82652 7.88712 8.11642 8.43623 9.14115 9.25483 9.86128 10.88812 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011802 B = 0.003680 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.928523 B = 7607.623452 C = 9810.815061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.045 3.955 3 Si 0.927 3.073 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.409 4.409 8 H 0.088 0.912 9 O -0.114 6.114 10 C 0.164 3.836 11 C -0.237 4.237 12 C -0.062 4.062 13 C -0.230 4.230 14 C -0.044 4.044 15 C -0.147 4.147 16 C 0.093 3.907 17 N -0.180 5.180 18 N -0.598 5.598 19 C 0.498 3.502 20 O -0.415 6.415 21 C 0.046 3.954 22 N -0.516 5.516 23 C 0.013 3.987 24 C 0.067 3.933 25 O -0.391 6.391 26 C 0.065 3.935 27 C 0.019 3.981 28 H 0.267 0.733 29 H 0.127 0.873 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.364 0.636 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.033 0.967 38 H 0.115 0.885 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.009 -7.110 0.888 12.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.166 4.166 3 Si 0.752 3.248 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.485 4.485 8 H 0.106 0.894 9 O -0.010 6.010 10 C 0.103 3.897 11 C -0.257 4.257 12 C -0.081 4.081 13 C -0.250 4.250 14 C -0.065 4.065 15 C -0.151 4.151 16 C -0.116 4.116 17 N 0.014 4.986 18 N -0.342 5.342 19 C 0.280 3.720 20 O -0.279 6.279 21 C -0.087 4.087 22 N -0.241 5.241 23 C -0.114 4.114 24 C -0.010 4.010 25 O -0.310 6.310 26 C -0.012 4.012 27 C -0.109 4.109 28 H 0.077 0.923 29 H 0.145 0.855 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.115 0.885 34 H 0.200 0.800 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.133 0.867 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.103 0.897 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.220 -4.638 0.386 11.229 hybrid contribution 0.030 -1.322 0.637 1.468 sum -10.189 -5.960 1.023 11.849 Atomic orbital electron populations 1.70288 1.04635 1.26838 1.39561 1.25339 0.95901 0.98291 0.97033 0.85881 0.79331 0.81519 0.78058 1.19322 1.20353 1.20377 1.21376 0.91622 0.81235 1.54255 0.89414 1.84172 1.33152 1.10740 1.72969 1.19439 0.89929 0.87869 0.92420 1.21121 0.93707 0.99017 1.11822 1.20828 0.98382 0.92446 0.96464 1.20385 0.94028 0.96906 1.13664 1.20623 0.93492 0.95450 0.96927 1.17329 0.89014 0.91610 1.17168 1.24208 0.93994 0.93457 0.99921 1.75877 0.87329 1.24061 1.11307 1.47188 1.03289 1.08815 1.74932 1.20212 0.87798 0.84502 0.79478 1.91047 1.71229 1.25720 1.39877 1.21892 0.93113 0.91559 1.02169 1.61786 1.10823 1.11419 1.40110 1.23005 1.04582 0.93992 0.89864 1.22663 0.80491 0.95776 1.02066 1.87936 1.24243 1.71210 1.47620 1.22604 0.99870 0.89449 0.89254 1.22804 0.87953 0.98737 1.01416 0.92286 0.85526 0.87667 0.87615 0.86995 0.88475 0.80012 0.88264 0.92429 0.94849 0.86664 0.91684 0.88486 0.92137 0.88704 0.89712 0.94150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -22.99 12.58 55.48 0.70 -22.29 16 2 C 0.05 1.26 5.49 -17.52 -0.10 1.16 16 3 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.41 -11.53 9.49 30.88 0.29 -11.23 16 8 H 0.09 2.32 5.21 -52.49 -0.27 2.04 16 9 O -0.11 -3.24 7.64 0.57 0.00 -3.23 16 10 C 0.16 4.00 6.66 -38.61 -0.26 3.74 16 11 C -0.24 -5.21 9.16 -39.45 -0.36 -5.57 16 12 C -0.06 -1.13 10.03 -39.52 -0.40 -1.53 16 13 C -0.23 -3.90 10.03 -39.60 -0.40 -4.29 16 14 C -0.04 -0.76 9.79 -39.17 -0.38 -1.14 16 15 C -0.15 -3.07 5.88 -104.89 -0.62 -3.68 16 16 C 0.09 1.81 10.75 -14.70 -0.16 1.65 16 17 N -0.18 -4.05 8.90 32.13 0.29 -3.76 16 18 N -0.60 -10.78 6.26 31.22 0.20 -10.59 16 19 C 0.50 9.42 7.66 -10.99 -0.08 9.34 16 20 O -0.42 -10.15 13.59 5.53 0.08 -10.07 16 21 C 0.05 0.61 5.45 -4.98 -0.03 0.58 16 22 N -0.52 -7.48 4.46 -235.75 -1.05 -8.54 16 23 C 0.01 0.20 5.29 -3.71 -0.02 0.18 16 24 C 0.07 0.95 7.01 37.21 0.26 1.21 16 25 O -0.39 -5.39 10.83 -35.23 -0.38 -5.77 16 26 C 0.07 0.73 7.01 37.21 0.26 0.99 16 27 C 0.02 0.21 5.64 -3.71 -0.02 0.19 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.13 2.80 5.64 -52.48 -0.30 2.50 16 30 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 31 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.10 1.42 8.02 -52.49 -0.42 1.00 16 34 H 0.36 4.77 8.65 -182.60 -1.58 3.19 16 35 H 0.10 1.07 8.04 -51.93 -0.42 0.65 16 36 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.12 2.19 5.88 -51.93 -0.31 1.88 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 44 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -35.21 369.43 -8.71 -43.92 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -7.07 Total: 7.25 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -2.00 Total: -8.41 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.13 Total: -45.18 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.30 Total: -19.07 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.21 -8.71 -43.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019851649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.504 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds