Wall clock time and date at job start Tue Mar 31 2020 06:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35990 * 116.99668 * 2 1 4 4 C 1.38715 * 119.98088 * 179.97438 * 3 2 1 5 5 C 1.38091 * 120.01665 * 179.97438 * 4 3 2 6 6 C 1.38871 * 119.98319 * 359.97438 * 5 4 3 7 7 N 1.39985 * 120.02021 * 179.97438 * 6 5 4 8 8 C 1.38130 * 119.99813 * 147.16607 * 7 6 5 9 9 N 1.32434 * 119.46855 * 354.21749 * 8 7 6 10 10 C 1.32354 * 122.53449 * 179.97438 * 9 8 7 11 11 N 1.38081 * 119.46745 * 179.97438 * 10 9 8 12 12 C 1.40576 * 121.07161 * 0.02562 * 10 9 8 13 13 C 1.43197 * 120.61253 * 180.02562 * 12 10 9 14 14 N 9.42295 * 112.05826 * 158.30766 * 3 1 2 15 15 C 1.42286 * 118.77779 * 359.97438 * 12 10 9 16 16 C 1.40444 * 121.11051 * 179.97438 * 15 12 10 17 17 H 1.08001 * 120.00122 * 318.07727 * 16 15 12 18 18 C 1.40519 * 120.00036 * 137.80821 * 16 15 12 19 19 N 1.30499 * 119.99756 * 339.58042 * 18 16 15 20 20 Si 1.86801 * 120.00312 * 159.57937 * 18 16 15 21 21 H 1.48499 * 109.47077 * 60.00188 * 20 18 16 22 22 H 1.48500 * 109.47041 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46869 * 299.99984 * 20 18 16 24 24 C 1.40535 * 119.46580 * 174.47391 * 8 7 6 25 25 C 1.43206 * 120.60973 * 0.02562 * 24 8 7 26 26 N 8.96330 * 121.25189 * 6.27754 * 2 1 3 27 27 C 1.38879 * 119.96002 * 0.27331 * 6 5 4 28 28 C 1.38083 * 119.98171 * 359.47170 * 27 6 5 29 29 H 1.09007 * 109.46327 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47380 * 299.99333 * 1 2 3 31 31 H 1.08993 * 109.47124 * 60.00527 * 1 2 3 32 32 H 1.07997 * 119.98689 * 359.97438 * 4 3 2 33 33 H 1.07999 * 120.00493 * 179.97438 * 5 4 3 34 34 H 0.96994 * 120.00370 * 327.17105 * 7 6 5 35 35 H 0.96990 * 120.00355 * 180.02562 * 11 10 9 36 36 H 0.96997 * 119.99207 * 0.02562 * 11 10 9 37 37 H 0.96994 * 119.99432 * 185.39495 * 19 18 16 38 38 H 1.08010 * 120.00826 * 179.69774 * 27 6 5 39 39 H 1.08009 * 119.99395 * 180.23429 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4316 1.2839 0.0005 5 6 4.0592 2.5140 0.0000 6 6 3.3032 3.6788 -0.0016 7 7 3.9386 4.9262 -0.0016 8 6 3.3573 5.9974 -0.6516 9 7 2.2593 5.8073 -1.3673 10 6 1.6522 6.7897 -2.0139 11 7 0.5105 6.5199 -2.7422 12 6 2.1514 8.1032 -1.9722 13 6 1.4863 9.1587 -2.6751 14 7 0.9568 9.9972 -3.2280 15 6 3.3291 8.3647 -1.2178 16 6 3.8706 9.6584 -1.1430 17 1 3.9173 10.2763 -2.0275 18 6 4.3465 10.1510 0.0840 19 7 3.9453 9.6126 1.2030 20 14 5.5533 11.5765 0.1134 21 1 4.9353 12.7617 -0.5335 22 1 5.8988 11.9037 1.5201 23 1 6.7857 11.1969 -0.6230 24 6 3.9435 7.2704 -0.5471 25 6 5.1343 7.4636 0.2245 26 7 6.0792 7.6167 0.8379 27 6 1.9164 3.6056 0.0031 28 6 1.2904 2.3748 -0.0017 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 4.0194 0.3779 0.0014 33 1 5.1378 2.5700 0.0008 34 1 4.7872 5.0383 0.4547 35 1 0.0595 7.2339 -3.2193 36 1 0.1595 5.6163 -2.7765 37 1 4.2114 10.0012 2.0509 38 1 1.3276 4.5111 0.0067 39 1 0.2118 2.3176 -0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025572000.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:24 Heat of formation + Delta-G solvation = 81.437801 kcal Electronic energy + Delta-G solvation = -27301.906710 eV Core-core repulsion = 23402.752961 eV Total energy + Delta-G solvation = -3899.153750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.112 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.20218 -39.42826 -37.77459 -36.09924 -35.57959 -34.75609 -34.16207 -32.80841 -31.27457 -30.80265 -29.43731 -27.97837 -26.99207 -26.33619 -23.52287 -22.27922 -22.12815 -21.15312 -19.15091 -18.26193 -18.03178 -17.67097 -16.83028 -16.09952 -16.00819 -15.71888 -15.61429 -15.13497 -14.50741 -14.30811 -14.17611 -13.97677 -13.56549 -13.25398 -13.00695 -12.74098 -12.57076 -12.42108 -12.29072 -12.10735 -11.91921 -11.85329 -11.82295 -11.73658 -11.50816 -11.29362 -11.13663 -10.76243 -10.68706 -10.57112 -10.51252 -9.60206 -9.06744 -8.92242 -8.64608 -8.27366 -7.54181 -7.26513 -6.65717 -5.11990 1.44046 1.58303 2.06245 2.40771 2.93094 2.96224 3.02818 3.29963 3.44619 3.68145 3.74042 3.76326 3.97779 4.06562 4.12068 4.35088 4.54246 4.91588 5.00774 5.07881 5.15083 5.21880 5.30947 5.35671 5.43001 5.46839 5.52085 5.67634 5.77041 6.11130 6.20071 6.24991 6.48070 6.59903 6.65536 6.69602 6.82680 6.95195 7.18080 7.37583 7.54761 7.64827 7.78377 7.98855 8.04267 8.18373 8.29835 8.68041 8.87522 9.05276 9.68305 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.003599 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.701304 B = 7777.056357 C = 9291.702043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.091 3.909 4 C -0.132 4.132 5 C -0.123 4.123 6 C 0.147 3.853 7 N -0.660 5.660 8 C 0.495 3.505 9 N -0.640 5.640 10 C 0.512 3.488 11 N -0.848 5.848 12 C -0.282 4.282 13 C 0.308 3.692 14 N -0.505 5.505 15 C 0.254 3.746 16 C -0.445 4.445 17 H 0.099 0.901 18 C 0.086 3.914 19 N -0.744 5.744 20 Si 0.909 3.091 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.255 1.255 24 C -0.239 4.239 25 C 0.324 3.676 26 N -0.505 5.505 27 C -0.073 4.073 28 C -0.187 4.187 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.415 0.585 35 H 0.404 0.596 36 H 0.399 0.601 37 H 0.295 0.705 38 H 0.146 0.854 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.065 -13.821 -0.544 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.238 6.238 3 C 0.046 3.954 4 C -0.151 4.151 5 C -0.144 4.144 6 C 0.051 3.949 7 N -0.284 5.284 8 C 0.261 3.739 9 N -0.371 5.371 10 C 0.272 3.728 11 N -0.389 5.389 12 C -0.297 4.297 13 C -0.002 4.002 14 N -0.185 5.185 15 C 0.243 3.757 16 C -0.473 4.473 17 H 0.117 0.883 18 C -0.141 4.141 19 N -0.365 5.365 20 Si 0.732 3.268 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.179 1.179 24 C -0.254 4.254 25 C 0.013 3.987 26 N -0.185 5.185 27 C -0.093 4.093 28 C -0.207 4.207 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.252 0.748 35 H 0.234 0.766 36 H 0.227 0.773 37 H 0.107 0.893 38 H 0.164 0.836 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.682 -13.379 -0.239 14.176 hybrid contribution 0.411 1.300 0.216 1.380 sum -4.271 -12.079 -0.022 12.812 Atomic orbital electron populations 1.22970 0.78966 1.03332 1.01291 1.86033 1.20900 1.27322 1.89540 1.18918 0.92252 0.83958 1.00250 1.20039 0.91226 0.97667 1.06199 1.20660 0.99562 0.90579 1.03622 1.17632 0.91917 0.84504 1.00877 1.41912 1.24691 1.06265 1.55516 1.17398 0.87091 0.84040 0.85357 1.66334 1.15199 1.32825 1.22698 1.17456 0.84212 0.86866 0.84276 1.42089 1.28058 1.13451 1.55335 1.16100 1.03637 0.88396 1.21616 1.25242 0.91589 0.92311 0.91077 1.81050 1.12570 1.09752 1.15095 1.16755 0.85147 0.91411 0.82395 1.19568 1.32664 0.98913 0.96166 0.88326 1.26013 0.94533 0.98912 0.94639 1.69509 1.31875 1.35672 0.99464 0.86279 0.81194 0.80369 0.78997 1.18407 1.19681 1.17929 1.15952 0.99084 0.92006 1.18349 1.24975 0.91443 0.91264 0.91027 1.81021 1.14300 1.09678 1.13493 1.21083 0.93229 0.97896 0.97134 1.21078 0.99657 0.91857 1.08068 0.88787 0.92875 0.92796 0.85533 0.85523 0.74778 0.76607 0.77252 0.89318 0.83645 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.82 10.50 -19.71 -0.21 -4.03 16 3 C 0.09 1.17 6.69 -39.23 -0.26 0.91 16 4 C -0.13 -1.66 9.98 -39.46 -0.39 -2.05 16 5 C -0.12 -1.61 9.96 -39.40 -0.39 -2.00 16 6 C 0.15 2.21 6.29 -83.66 -0.53 1.68 16 7 N -0.66 -10.86 5.38 -9.82 -0.05 -10.92 16 8 C 0.50 9.35 7.21 -155.30 -1.12 8.23 16 9 N -0.64 -11.38 6.98 -11.30 -0.08 -11.46 16 10 C 0.51 9.09 7.74 -155.40 -1.20 7.88 16 11 N -0.85 -11.60 8.96 31.23 0.28 -11.32 16 12 C -0.28 -5.74 5.84 -105.54 -0.62 -6.36 16 13 C 0.31 6.39 13.17 -22.49 -0.30 6.09 16 14 N -0.50 -10.82 18.53 41.81 0.77 -10.04 16 15 C 0.25 5.68 5.35 -105.95 -0.57 5.11 16 16 C -0.44 -10.37 7.97 -37.89 -0.30 -10.67 16 17 H 0.10 2.28 7.80 -52.49 -0.41 1.87 16 18 C 0.09 1.97 4.12 -17.26 -0.07 1.90 16 19 N -0.74 -17.47 11.14 55.58 0.62 -16.86 16 20 Si 0.91 18.28 29.61 -169.99 -5.03 13.25 16 21 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 22 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 24 C -0.24 -5.08 5.52 -105.54 -0.58 -5.67 16 25 C 0.32 7.17 10.36 -22.44 -0.23 6.94 16 26 N -0.50 -11.53 18.48 41.87 0.77 -10.75 16 27 C -0.07 -1.06 8.56 -39.40 -0.34 -1.40 16 28 C -0.19 -2.38 9.03 -39.46 -0.36 -2.73 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 31 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 32 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.41 6.58 7.62 -40.82 -0.31 6.27 16 35 H 0.40 5.29 7.62 -40.82 -0.31 4.98 16 36 H 0.40 4.52 8.94 -40.82 -0.37 4.15 16 37 H 0.30 6.56 8.30 -40.82 -0.34 6.22 16 38 H 0.15 2.29 6.25 -52.48 -0.33 1.96 16 39 H 0.12 1.30 6.29 -52.48 -0.33 0.97 16 LS Contribution 350.90 15.07 5.29 5.29 Total: -1.00 -26.67 350.90 -7.16 -33.82 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -3.25 Total: 13.94 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: -6.27 Total: 9.09 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: 2.32 Total: -71.36 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -0.21 Total: -4.03 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -26.67 -7.16 -33.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025572000.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.262 kcal (2) G-P(sol) polarization free energy of solvation -26.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds