Wall clock time and date at job start Tue Mar 31 2020 05:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00215 * 2 1 4 4 H 1.48507 * 109.46969 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47323 * 119.99920 * 3 2 1 6 6 H 1.48502 * 109.47057 * 240.00231 * 3 2 1 7 7 C 1.37884 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00090 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99617 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46790 * 179.97438 * 9 7 2 11 11 C 1.33781 * 120.23510 * 269.71713 * 10 9 7 12 12 O 1.21629 * 126.53838 * 0.02570 * 11 10 9 13 13 S 1.77217 * 106.92569 * 179.91250 * 11 10 9 14 14 C 1.77493 * 94.58028 * 0.29576 * 13 11 10 15 15 C 1.35580 * 127.97459 * 179.80828 * 14 13 11 16 16 C 1.47016 * 119.99837 * 352.56388 * 15 14 13 17 17 C 1.39928 * 120.18013 * 338.92729 * 16 15 14 18 18 C 1.37864 * 119.81879 * 179.77028 * 17 16 15 19 19 C 1.38424 * 120.17666 * 0.50993 * 18 17 16 20 20 N 1.48027 * 119.81778 * 179.76525 * 19 18 17 21 21 O 1.21792 * 119.99904 * 179.97438 * 20 19 18 22 22 O 1.21807 * 119.99988 * 359.97438 * 20 19 18 23 23 C 1.38416 * 120.36277 * 359.74780 * 19 18 17 24 24 C 1.37866 * 120.17893 * 359.97438 * 23 19 18 25 25 C 1.32266 * 120.22730 * 90.00292 * 10 9 7 26 26 O 1.21667 * 122.54876 * 359.97438 * 25 10 9 27 27 H 0.96999 * 120.00087 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47324 * 299.99548 * 9 7 2 29 29 H 1.08997 * 109.47570 * 60.00079 * 9 7 2 30 30 H 1.07993 * 119.99914 * 172.56168 * 15 14 13 31 31 H 1.08004 * 120.08832 * 0.02615 * 17 16 15 32 32 H 1.07996 * 119.91190 * 180.23854 * 18 17 16 33 33 H 1.07995 * 119.90986 * 179.97438 * 23 19 18 34 34 H 1.08009 * 120.09036 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6365 -4.1284 -1.1553 12 8 2.3210 -3.7671 -2.2730 13 16 3.7607 -5.4362 -0.7473 14 6 3.5861 -5.2311 1.0070 15 6 4.1899 -5.9382 1.9938 16 6 4.9883 -7.1274 1.6630 17 6 4.7893 -7.7928 0.4482 18 6 5.5455 -8.9045 0.1436 19 6 6.4922 -9.3691 1.0402 20 7 7.2961 -10.5666 0.7071 21 8 8.1304 -10.9780 1.4934 22 8 7.1233 -11.1406 -0.3532 23 6 6.6915 -8.7199 2.2463 24 6 5.9476 -7.6034 2.5636 25 6 2.6358 -4.1188 1.1434 26 8 2.2744 -3.6955 2.2253 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5567 0.8903 29 1 0.6248 -2.5571 -0.8896 30 1 4.0843 -5.6277 3.0228 31 1 4.0481 -7.4339 -0.2506 32 1 5.3958 -9.4169 -0.7953 33 1 7.4319 -9.0889 2.9406 34 1 6.1046 -7.0977 3.5050 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028295037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:15 Heat of formation + Delta-G solvation = -5.878524 kcal Electronic energy + Delta-G solvation = -24535.894047 eV Core-core repulsion = 20529.864900 eV Total energy + Delta-G solvation = -4006.029148 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.050 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.47990 -41.15197 -40.00344 -38.45523 -36.86601 -35.52291 -34.93801 -33.11677 -32.04837 -31.20092 -28.80078 -26.92500 -24.76153 -24.52402 -23.83831 -22.84260 -21.43609 -19.89498 -19.57414 -19.02469 -18.74395 -17.82676 -17.25421 -16.96424 -16.52981 -15.93623 -15.83186 -15.43989 -15.30944 -14.83854 -14.43991 -14.13852 -14.02174 -13.97582 -13.74934 -13.04276 -12.57912 -12.11025 -11.88400 -11.85286 -11.70169 -11.64967 -11.49269 -11.43202 -11.30131 -10.87876 -10.66594 -10.31993 -10.13885 -9.99337 -9.94442 -9.63226 -9.03967 -8.68749 -8.28843 -6.32022 -4.39430 -0.90019 0.30119 0.41271 0.74696 1.04961 1.15786 1.34743 1.89286 2.82579 2.90393 3.14997 3.19768 3.23695 3.27298 3.83336 3.87163 3.98973 4.23297 4.26121 4.32209 4.41994 4.79033 5.04766 5.07891 5.10113 5.18699 5.24638 5.39437 5.69141 5.74095 5.91137 6.07052 6.46338 6.93389 7.13712 7.31630 7.43605 7.57431 7.77833 7.80278 8.59608 9.26579 10.77425 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.026609 B = 0.002566 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.040798 B =10907.303844 C =11322.775204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.069 3.931 3 Si 0.906 3.094 4 H -0.282 1.282 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.231 3.769 10 N -0.551 5.551 11 C 0.535 3.465 12 O -0.417 6.417 13 S -0.059 6.059 14 C -0.169 4.169 15 C 0.006 3.994 16 C -0.015 4.015 17 C -0.107 4.107 18 C -0.045 4.045 19 C -0.041 4.041 20 N 0.028 4.972 21 O -0.161 6.161 22 O -0.159 6.159 23 C -0.055 4.055 24 C -0.092 4.092 25 C 0.552 3.448 26 O -0.452 6.452 27 H 0.269 0.731 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.169 0.831 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.654 -17.160 4.752 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.733 3.267 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.581 4.581 8 H 0.079 0.921 9 C 0.112 3.888 10 N -0.293 5.293 11 C 0.214 3.786 12 O -0.288 6.288 13 S 0.180 5.820 14 C -0.285 4.285 15 C -0.023 4.023 16 C -0.016 4.016 17 C -0.128 4.128 18 C -0.064 4.064 19 C -0.125 4.125 20 N 0.547 4.453 21 O -0.377 6.377 22 O -0.375 6.375 23 C -0.074 4.074 24 C -0.111 4.111 25 C 0.338 3.662 26 O -0.324 6.324 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.186 0.814 31 H 0.179 0.821 32 H 0.177 0.823 33 H 0.176 0.824 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.304 -16.695 3.977 20.018 hybrid contribution -0.069 1.497 0.561 1.600 sum 10.234 -15.198 4.538 18.877 Atomic orbital electron populations 1.69899 1.06069 1.27892 1.48575 1.24893 0.94992 0.99467 0.94128 0.86413 0.79522 0.81843 0.78919 1.20774 1.19882 1.19885 1.21099 0.93297 0.89833 1.53843 0.92126 1.19943 0.87012 0.81068 1.00749 1.46576 1.42939 1.34151 1.05656 1.22185 0.84157 0.85491 0.86767 1.90887 1.56588 1.60225 1.21052 1.86129 1.55451 1.41150 0.99276 1.24310 1.04615 1.02888 0.96696 1.21734 0.91124 0.90313 0.99152 1.19402 0.94460 0.93857 0.93926 1.21862 0.99613 0.94489 0.96805 1.20987 0.91320 0.94968 0.99152 1.21322 1.00290 0.91499 0.99364 1.43637 0.99968 1.01548 1.00111 1.94540 1.28227 1.68843 1.46053 1.94560 1.72801 1.58047 1.12067 1.20990 0.98607 0.93715 0.94101 1.21402 0.94237 0.95147 1.00325 1.17383 0.81641 0.82300 0.84894 1.90886 1.55833 1.59668 1.26048 0.92090 0.92086 0.92470 0.81360 0.82141 0.82317 0.82448 0.82557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.08 13.29 55.43 0.74 -24.35 16 2 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 3 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -14.73 9.38 -34.44 -0.32 -15.05 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.23 5.74 5.02 -5.19 -0.03 5.71 16 10 N -0.55 -11.23 2.46 -122.32 -0.30 -11.53 16 11 C 0.54 10.06 8.39 53.61 0.45 10.51 16 12 O -0.42 -8.95 17.38 5.25 0.09 -8.86 16 13 S -0.06 -0.78 19.03 -107.50 -2.05 -2.83 16 14 C -0.17 -2.17 6.34 -37.01 -0.23 -2.41 16 15 C 0.01 0.05 9.83 -36.98 -0.36 -0.31 16 16 C -0.02 -0.12 5.80 -105.08 -0.61 -0.73 16 17 C -0.11 -0.86 8.63 -39.09 -0.34 -1.20 16 18 C -0.05 -0.36 9.53 -39.65 -0.38 -0.74 16 19 C -0.04 -0.36 6.86 -79.81 -0.55 -0.91 16 20 N 0.03 0.31 4.45 34.03 0.15 0.46 16 21 O -0.16 -1.85 18.43 -29.46 -0.54 -2.39 16 22 O -0.16 -1.88 18.43 -29.46 -0.54 -2.42 16 23 C -0.06 -0.36 9.53 -39.65 -0.38 -0.74 16 24 C -0.09 -0.52 9.80 -39.09 -0.38 -0.90 16 25 C 0.55 9.96 7.62 -13.85 -0.11 9.86 16 26 O -0.45 -9.27 16.85 5.22 0.09 -9.19 16 27 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.06 1.59 7.51 -51.93 -0.39 1.20 16 29 H 0.06 1.49 7.68 -51.93 -0.40 1.10 16 30 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.16 1.35 4.63 -28.92 -0.13 1.22 16 32 H 0.16 1.06 7.59 -52.49 -0.40 0.67 16 33 H 0.16 0.79 7.59 -52.49 -0.40 0.39 16 34 H 0.16 0.44 8.06 -52.48 -0.42 0.02 16 LS Contribution 330.61 15.07 4.98 4.98 Total: -1.00 -31.70 330.61 -7.85 -39.55 By element: Atomic # 1 Polarization: -2.16 SS G_CDS: -2.11 Total: -4.27 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -3.33 Total: 4.89 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.59 Total: -35.42 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.91 Total: -22.86 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -2.05 Total: -2.83 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.70 -7.85 -39.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028295037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.668 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds