Wall clock time and date at job start Tue Mar 31 2020 05:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00215 * 2 1 4 4 H 1.48507 * 109.46969 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47323 * 119.99920 * 3 2 1 6 6 H 1.48502 * 109.47057 * 240.00231 * 3 2 1 7 7 C 1.37884 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00090 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99617 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46790 * 179.97438 * 9 7 2 11 11 C 1.33781 * 120.23510 * 269.71713 * 10 9 7 12 12 O 1.21629 * 126.53838 * 0.02570 * 11 10 9 13 13 S 1.77217 * 106.92569 * 179.91250 * 11 10 9 14 14 C 1.77493 * 94.58028 * 0.29576 * 13 11 10 15 15 C 1.35580 * 127.97459 * 179.80828 * 14 13 11 16 16 C 1.47016 * 119.99837 * 352.56388 * 15 14 13 17 17 C 1.39928 * 120.18013 * 338.92729 * 16 15 14 18 18 C 1.37864 * 119.81879 * 179.77028 * 17 16 15 19 19 C 1.38424 * 120.17666 * 0.50993 * 18 17 16 20 20 N 1.48027 * 119.81778 * 179.76525 * 19 18 17 21 21 O 1.21792 * 119.99904 * 179.97438 * 20 19 18 22 22 O 1.21807 * 119.99988 * 359.97438 * 20 19 18 23 23 C 1.38416 * 120.36277 * 359.74780 * 19 18 17 24 24 C 1.37866 * 120.17893 * 359.97438 * 23 19 18 25 25 C 1.32266 * 120.22730 * 90.00292 * 10 9 7 26 26 O 1.21667 * 122.54876 * 359.97438 * 25 10 9 27 27 H 0.96999 * 120.00087 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47324 * 299.99548 * 9 7 2 29 29 H 1.08997 * 109.47570 * 60.00079 * 9 7 2 30 30 H 1.07993 * 119.99914 * 172.56168 * 15 14 13 31 31 H 1.08004 * 120.08832 * 0.02615 * 17 16 15 32 32 H 1.07996 * 119.91190 * 180.23854 * 18 17 16 33 33 H 1.07995 * 119.90986 * 179.97438 * 23 19 18 34 34 H 1.08009 * 120.09036 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6365 -4.1284 -1.1553 12 8 2.3210 -3.7671 -2.2730 13 16 3.7607 -5.4362 -0.7473 14 6 3.5861 -5.2311 1.0070 15 6 4.1899 -5.9382 1.9938 16 6 4.9883 -7.1274 1.6630 17 6 4.7893 -7.7928 0.4482 18 6 5.5455 -8.9045 0.1436 19 6 6.4922 -9.3691 1.0402 20 7 7.2961 -10.5666 0.7071 21 8 8.1304 -10.9780 1.4934 22 8 7.1233 -11.1406 -0.3532 23 6 6.6915 -8.7199 2.2463 24 6 5.9476 -7.6034 2.5636 25 6 2.6358 -4.1188 1.1434 26 8 2.2744 -3.6955 2.2253 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5567 0.8903 29 1 0.6248 -2.5571 -0.8896 30 1 4.0843 -5.6277 3.0228 31 1 4.0481 -7.4339 -0.2506 32 1 5.3958 -9.4169 -0.7953 33 1 7.4319 -9.0889 2.9406 34 1 6.1046 -7.0977 3.5050 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028295037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:15 Heat of formation + Delta-G solvation = -25.144871 kcal Electronic energy + Delta-G solvation = -24536.729499 eV Core-core repulsion = 20529.864900 eV Total energy + Delta-G solvation = -4006.864599 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.050 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.26784 -42.59345 -40.70252 -39.86013 -37.69784 -37.06167 -35.85790 -35.06318 -32.64890 -32.22394 -30.41087 -27.98578 -26.24333 -25.93642 -24.56278 -23.92334 -22.56454 -20.96356 -20.47395 -20.09718 -19.68900 -19.14520 -18.61418 -18.28925 -17.52469 -17.42397 -16.96210 -16.60898 -16.50217 -16.00618 -15.68201 -15.41207 -14.98536 -14.94412 -14.55415 -14.43458 -13.84531 -13.75125 -13.32057 -12.91129 -12.80027 -12.72388 -12.62727 -12.52814 -12.44898 -12.32793 -12.30535 -12.11139 -11.70366 -11.09464 -10.93729 -10.77359 -10.63953 -10.47649 -9.26564 -8.39938 -6.55766 -1.71024 -0.65133 -0.54503 -0.06412 0.19232 0.21759 0.33574 0.77267 1.33578 1.37221 1.44789 1.61286 1.74508 2.24918 2.30097 2.73604 2.94034 3.26935 3.38352 3.42565 3.68198 3.72929 4.16349 4.24054 4.32130 4.43227 4.60501 4.63995 4.68642 4.75311 4.86537 5.02148 5.08920 5.35882 5.46742 5.61566 5.73322 5.94711 6.32380 6.43618 6.50715 7.14436 8.70059 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.026609 B = 0.002566 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.040798 B =10907.303844 C =11322.775204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.560 4.560 8 H 0.056 0.944 9 C 0.246 3.754 10 N -0.567 5.567 11 C 0.506 3.494 12 O -0.468 6.468 13 S 0.035 5.965 14 C -0.219 4.219 15 C 0.078 3.922 16 C -0.033 4.033 17 C -0.105 4.105 18 C -0.049 4.049 19 C -0.046 4.046 20 N 0.028 4.972 21 O -0.164 6.164 22 O -0.188 6.188 23 C -0.051 4.051 24 C -0.061 4.061 25 C 0.551 3.449 26 O -0.493 6.493 27 H 0.273 0.727 28 H 0.037 0.963 29 H 0.030 0.970 30 H 0.200 0.800 31 H 0.155 0.845 32 H 0.165 0.835 33 H 0.180 0.820 34 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.624 -18.442 6.908 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.189 1.189 6 H -0.194 1.194 7 C -0.598 4.598 8 H 0.074 0.926 9 C 0.124 3.876 10 N -0.310 5.310 11 C 0.188 3.812 12 O -0.343 6.343 13 S 0.275 5.725 14 C -0.334 4.334 15 C 0.050 3.950 16 C -0.034 4.034 17 C -0.126 4.126 18 C -0.068 4.068 19 C -0.129 4.129 20 N 0.543 4.457 21 O -0.381 6.381 22 O -0.399 6.399 23 C -0.070 4.070 24 C -0.080 4.080 25 C 0.340 3.660 26 O -0.368 6.368 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.216 0.784 31 H 0.172 0.828 32 H 0.183 0.817 33 H 0.197 0.803 34 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 13.303 -18.051 6.120 23.244 hybrid contribution -0.817 1.593 0.084 1.792 sum 12.486 -16.458 6.203 21.569 Atomic orbital electron populations 1.70011 1.07557 1.28965 1.49218 1.25849 0.95920 1.03173 0.93492 0.85378 0.78386 0.77409 0.79210 1.19730 1.18928 1.19365 1.21382 0.93236 0.91198 1.53943 0.92594 1.19291 0.87607 0.82538 0.98131 1.46582 1.42938 1.33753 1.07681 1.23199 0.85251 0.87023 0.85707 1.90840 1.58698 1.62559 1.22180 1.85742 1.52178 1.35873 0.98713 1.23902 1.07896 1.03997 0.97648 1.22265 0.85671 0.87582 0.99472 1.19435 0.95714 0.93671 0.94546 1.21756 0.99352 0.94635 0.96819 1.21037 0.91175 0.95023 0.99589 1.21564 1.00142 0.90740 1.00472 1.43963 0.99936 1.02007 0.99786 1.94522 1.28530 1.69211 1.45848 1.94566 1.73510 1.59124 1.12672 1.21349 0.98796 0.93424 0.93383 1.21798 0.91712 0.93732 1.00716 1.17961 0.81711 0.82823 0.83504 1.90846 1.57659 1.61484 1.26840 0.91766 0.94499 0.95202 0.78370 0.82797 0.81701 0.80300 0.78422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.02 13.29 21.45 0.28 -53.74 16 2 C 0.02 0.94 5.46 84.66 0.46 1.40 16 3 Si 0.97 43.62 29.54 68.60 2.03 45.64 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.56 -31.83 9.38 25.60 0.24 -31.59 16 8 H 0.06 3.14 7.81 -2.91 -0.02 3.11 16 9 C 0.25 13.14 5.02 85.63 0.43 13.57 16 10 N -0.57 -24.45 2.46 -779.31 -1.92 -26.36 16 11 C 0.51 19.94 8.39 129.95 1.09 21.03 16 12 O -0.47 -21.53 17.38 -4.12 -0.07 -21.60 16 13 S 0.04 0.89 19.03 -56.49 -1.07 -0.19 16 14 C -0.22 -5.19 6.34 23.93 0.15 -5.04 16 15 C 0.08 1.05 9.83 23.96 0.24 1.28 16 16 C -0.03 -0.33 5.80 -20.16 -0.12 -0.44 16 17 C -0.10 -1.29 8.63 22.59 0.19 -1.10 16 18 C -0.05 -0.62 9.53 22.23 0.21 -0.41 16 19 C -0.05 -0.63 6.86 36.46 0.25 -0.38 16 20 N 0.03 0.54 4.45 -46.25 -0.21 0.33 16 21 O -0.16 -3.36 18.43 18.90 0.35 -3.01 16 22 O -0.19 -4.24 18.43 18.88 0.35 -3.90 16 23 C -0.05 -0.40 9.53 22.22 0.21 -0.18 16 24 C -0.06 -0.29 9.80 22.59 0.22 -0.07 16 25 C 0.55 20.22 7.62 86.91 0.66 20.89 16 26 O -0.49 -20.73 16.85 -4.24 -0.07 -20.80 16 27 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.04 2.10 7.51 -2.39 -0.02 2.08 16 29 H 0.03 1.72 7.68 -2.39 -0.02 1.70 16 30 H 0.20 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.16 2.13 4.63 -17.89 -0.08 2.05 16 32 H 0.17 1.86 7.59 -2.91 -0.02 1.84 16 33 H 0.18 0.75 7.59 -2.91 -0.02 0.72 16 34 H 0.20 -0.54 8.06 -2.91 -0.02 -0.57 16 Total: -1.00 -75.64 330.61 5.03 -70.61 By element: Atomic # 1 Polarization: -7.06 SS G_CDS: 1.12 Total: -5.95 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 4.25 Total: 18.96 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -1.84 Total: -79.77 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: 0.55 Total: -49.30 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -1.07 Total: -0.19 kcal Total: -75.64 5.03 -70.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028295037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.463 kcal (2) G-P(sol) polarization free energy of solvation -75.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds