Wall clock time and date at job start Tue Mar 31 2020 05:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86798 * 120.00164 * 2 1 4 4 H 1.48499 * 109.47444 * 240.00102 * 3 2 1 5 5 H 1.48493 * 109.47306 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46982 * 120.00458 * 3 2 1 7 7 C 1.38685 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99904 * 179.97438 * 7 2 1 9 9 O 1.34790 * 120.00065 * 359.97438 * 7 2 1 10 10 C 1.35542 * 116.99826 * 185.07160 * 9 7 2 11 11 C 1.38744 * 120.17487 * 354.49327 * 10 9 7 12 12 C 1.38082 * 120.09707 * 179.97438 * 11 10 9 13 13 C 1.38601 * 120.44529 * 359.97438 * 12 11 10 14 14 C 1.37787 * 120.34437 * 359.67364 * 13 12 11 15 15 C 1.39883 * 119.89415 * 0.62512 * 14 13 12 16 16 C 1.46949 * 120.22224 * 179.67817 * 15 14 13 17 17 C 1.34972 * 119.99874 * 46.38194 * 16 15 14 18 18 C 1.46322 * 120.00087 * 14.24104 * 17 16 15 19 19 N 1.31344 * 118.53143 * 6.84071 * 18 17 16 20 20 C 1.34611 * 121.65734 * 180.02562 * 19 18 17 21 21 C 1.39893 * 121.48732 * 179.97438 * 20 19 18 22 22 C 1.36606 * 119.81110 * 180.02562 * 21 20 19 23 23 C 1.38913 * 120.97011 * 0.02562 * 22 21 20 24 24 C 1.37806 * 120.59834 * 359.97438 * 23 22 21 25 25 C 1.39371 * 119.42685 * 0.25530 * 24 23 22 26 26 C 1.47003 * 121.79381 * 180.23200 * 25 24 23 27 27 O 1.21719 * 121.24121 * 359.52687 * 26 25 24 28 28 N 1.35348 * 117.52958 * 179.74435 * 26 25 24 29 29 H 0.96994 * 119.82470 * 179.78548 * 28 26 25 30 30 H 0.97008 * 119.99721 * 359.97438 * 1 2 3 31 31 H 1.07998 * 119.95244 * 359.97017 * 11 10 9 32 32 H 1.08001 * 119.77829 * 179.97438 * 12 11 10 33 33 H 1.08001 * 119.83052 * 179.97438 * 13 12 11 34 34 H 1.08002 * 120.05810 * 180.30725 * 14 13 12 35 35 H 1.08000 * 120.00320 * 226.38962 * 16 15 14 36 36 H 1.07997 * 119.99903 * 194.23149 * 17 16 15 37 37 H 1.08006 * 120.09224 * 359.97438 * 21 20 19 38 38 H 1.07997 * 119.51567 * 179.97438 * 22 21 20 39 39 H 1.07995 * 119.69836 * 180.02562 * 23 22 21 40 40 H 1.07996 * 120.28886 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0086 -1.2011 -0.0005 8 1 3.0886 -1.2011 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0688 -3.5028 0.1057 11 6 3.4548 -3.4402 0.0934 12 6 4.2012 -4.5968 0.2022 13 6 3.5755 -5.8275 0.3250 14 6 2.2003 -5.9101 0.3465 15 6 1.4301 -4.7481 0.2309 16 6 -0.0371 -4.8286 0.2460 17 6 -0.6622 -5.5802 1.1766 18 6 0.0750 -6.0587 2.3465 19 7 1.3022 -5.6295 2.5333 20 6 2.0376 -6.0291 3.5877 21 6 3.3446 -5.5701 3.7829 22 6 4.0603 -5.9985 4.8647 23 6 3.5100 -6.8874 5.7794 24 6 2.2252 -7.3576 5.6148 25 6 1.4780 -6.9379 4.5157 26 6 0.1013 -7.4025 4.2920 27 8 -0.4345 -8.1812 5.0588 28 7 -0.5467 -6.9357 3.1993 29 1 -1.4552 -7.2229 3.0179 30 1 -0.4850 0.8401 0.0004 31 1 3.9506 -2.4855 -0.0016 32 1 5.2797 -4.5422 0.1916 33 1 4.1690 -6.7259 0.4090 34 1 1.7176 -6.8710 0.4474 35 1 -0.6153 -4.2865 -0.4877 36 1 -1.7066 -5.8283 1.0579 37 1 3.7868 -4.8797 3.0798 38 1 5.0690 -5.6414 5.0106 39 1 4.0941 -7.2123 6.6277 40 1 1.8025 -8.0489 6.3288 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033528063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:41 Heat of formation + Delta-G solvation = 49.160633 kcal Electronic energy + Delta-G solvation = -28008.265462 eV Core-core repulsion = 24140.845229 eV Total energy + Delta-G solvation = -3867.420233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.110 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.30849 -39.16351 -38.24750 -37.63693 -36.34520 -33.83405 -33.39522 -32.34654 -31.15813 -29.75636 -29.12743 -28.35950 -25.40896 -24.79803 -24.35460 -22.27082 -21.77889 -21.20967 -19.62972 -19.07352 -18.59678 -18.01310 -17.38925 -16.52936 -15.69982 -15.65575 -15.15440 -14.95569 -14.67486 -14.59710 -14.34974 -13.96975 -13.76326 -13.68838 -13.35344 -13.16142 -12.99866 -12.63364 -12.35398 -12.02852 -11.80598 -11.72458 -11.66725 -11.39310 -10.96365 -10.79219 -10.66274 -10.50474 -10.22967 -10.17525 -9.69327 -9.46469 -9.29962 -9.04697 -8.87588 -8.02614 -7.39742 -7.03290 -6.51993 -4.08488 0.41736 0.92163 1.65854 2.36363 2.50937 2.67903 2.77661 3.09677 3.11488 3.13314 3.20463 3.91374 4.14973 4.24845 4.40597 4.60644 4.80880 4.96727 5.01495 5.12535 5.22364 5.29373 5.33859 5.49095 5.58677 5.63905 5.77116 5.87213 6.06799 6.08474 6.14355 6.22429 6.32885 6.45645 6.51129 6.56435 6.64917 6.68399 6.73965 6.87305 6.94335 7.07846 7.27011 7.37344 7.38831 7.81544 7.82168 7.92955 8.19999 8.94319 9.62764 10.65456 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.013255 B = 0.003905 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.867702 B = 7168.093892 C = 7604.265946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.042 3.958 3 Si 0.939 3.061 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.170 6.170 10 C 0.179 3.821 11 C -0.234 4.234 12 C -0.063 4.063 13 C -0.217 4.217 14 C 0.000 4.000 15 C -0.146 4.146 16 C 0.064 3.936 17 C -0.223 4.223 18 C 0.440 3.560 19 N -0.493 5.493 20 C 0.178 3.822 21 C -0.106 4.106 22 C -0.076 4.076 23 C -0.155 4.155 24 C -0.043 4.043 25 C -0.219 4.219 26 C 0.553 3.447 27 O -0.531 6.531 28 N -0.653 5.653 29 H 0.414 0.586 30 H 0.271 0.729 31 H 0.125 0.875 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.988 -10.970 3.996 12.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.163 4.163 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.073 6.073 10 C 0.124 3.876 11 C -0.253 4.253 12 C -0.081 4.081 13 C -0.236 4.236 14 C -0.018 4.018 15 C -0.148 4.148 16 C 0.042 3.958 17 C -0.244 4.244 18 C 0.180 3.820 19 N -0.213 5.213 20 C 0.066 3.934 21 C -0.126 4.126 22 C -0.095 4.095 23 C -0.173 4.173 24 C -0.063 4.063 25 C -0.225 4.225 26 C 0.346 3.654 27 O -0.408 6.408 28 N -0.297 5.297 29 H 0.253 0.747 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.905 -10.658 4.131 12.079 hybrid contribution -0.229 0.254 0.619 0.707 sum 3.676 -10.404 4.750 12.013 Atomic orbital electron populations 1.69997 1.05933 1.27861 1.45590 1.25253 0.95818 0.98767 0.96455 0.85813 0.78780 0.79856 0.79225 1.19466 1.20289 1.19503 1.21270 0.91792 0.80690 1.52845 0.89078 1.83862 1.34546 1.11453 1.77422 1.19317 0.90009 0.86987 0.91318 1.21047 0.93621 0.98887 1.11757 1.20770 0.98226 0.92307 0.96821 1.20357 0.94107 0.96694 1.12427 1.20396 0.93191 0.95226 0.93033 1.17738 0.91634 0.91244 1.14142 1.22384 0.93798 0.86639 0.92951 1.21306 0.98961 1.09569 0.94565 1.21503 0.88296 0.83321 0.88847 1.69619 1.03354 1.27573 1.20791 1.18867 0.94456 0.91306 0.88808 1.20763 0.92214 1.00990 0.98588 1.20993 0.99757 0.95402 0.93362 1.21069 0.95499 1.00131 1.00611 1.20919 0.93431 0.96951 0.94957 1.20598 0.94785 1.05950 1.01119 1.18379 0.86525 0.80477 0.79981 1.90853 1.69381 1.35027 1.45511 1.44820 1.18960 1.41788 1.24084 0.74730 0.91931 0.85701 0.87815 0.88124 0.88446 0.84661 0.84613 0.84161 0.85416 0.85622 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.83 13.67 55.48 0.76 -23.08 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 19.68 29.55 -169.99 -5.02 14.66 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.39 -10.21 9.49 30.90 0.29 -9.91 16 8 H 0.09 2.22 5.21 -52.49 -0.27 1.94 16 9 O -0.17 -4.43 9.21 0.80 0.01 -4.43 16 10 C 0.18 3.92 6.66 -38.54 -0.26 3.67 16 11 C -0.23 -4.68 9.16 -39.45 -0.36 -5.04 16 12 C -0.06 -1.06 10.03 -39.50 -0.40 -1.45 16 13 C -0.22 -3.50 10.02 -39.61 -0.40 -3.90 16 14 C 0.00 0.01 6.65 -39.13 -0.26 -0.25 16 15 C -0.15 -2.74 4.16 -104.90 -0.44 -3.18 16 16 C 0.06 1.07 9.33 -37.22 -0.35 0.73 16 17 C -0.22 -3.12 9.83 -37.49 -0.37 -3.49 16 18 C 0.44 6.72 6.78 -154.71 -1.05 5.67 16 19 N -0.49 -8.51 5.30 -9.02 -0.05 -8.55 16 20 C 0.18 2.95 6.61 -84.81 -0.56 2.39 16 21 C -0.11 -1.60 9.98 -39.55 -0.39 -2.00 16 22 C -0.08 -0.92 9.95 -39.92 -0.40 -1.32 16 23 C -0.15 -1.81 10.02 -39.49 -0.40 -2.21 16 24 C -0.04 -0.59 9.68 -39.32 -0.38 -0.97 16 25 C -0.22 -3.47 5.90 -104.71 -0.62 -4.09 16 26 C 0.55 8.87 7.99 -12.45 -0.10 8.77 16 27 O -0.53 -9.46 17.46 5.17 0.09 -9.37 16 28 N -0.65 -8.95 5.33 -11.18 -0.06 -9.01 16 29 H 0.41 4.39 8.76 -40.82 -0.36 4.04 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.13 2.52 5.64 -52.49 -0.30 2.23 16 32 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.10 1.44 8.06 -52.49 -0.42 1.01 16 34 H 0.10 1.52 7.45 -52.49 -0.39 1.13 16 35 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.14 2.22 8.06 -52.48 -0.42 1.80 16 38 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.13 1.66 7.82 -52.49 -0.41 1.24 16 LS Contribution 349.17 15.07 5.26 5.26 Total: -1.00 -31.04 349.17 -9.36 -40.40 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -3.82 Total: 9.72 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -6.52 Total: -15.61 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.65 Total: -40.64 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.10 Total: -13.79 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.04 -9.36 -40.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033528063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.558 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds