Wall clock time and date at job start Tue Mar 31 2020 04:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86799 * 120.00513 * 2 1 4 4 H 1.48499 * 109.47335 * 270.00161 * 3 2 1 5 5 H 1.48504 * 109.46916 * 30.00126 * 3 2 1 6 6 H 1.48500 * 109.47291 * 149.99871 * 3 2 1 7 7 C 1.38650 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99735 * 179.97438 * 7 2 1 9 9 O 1.34806 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.35650 * 117.00010 * 185.06912 * 9 7 2 11 11 C 1.39084 * 119.91014 * 354.66513 * 10 9 7 12 12 C 1.37717 * 120.08684 * 180.02562 * 11 10 9 13 13 C 1.39812 * 119.91055 * 0.02562 * 12 11 10 14 14 C 1.47358 * 120.08822 * 179.97438 * 13 12 11 15 15 N 1.29828 * 119.99940 * 13.47559 * 14 13 12 16 16 N 1.40109 * 120.00046 * 21.56989 * 15 14 13 17 17 C 1.34770 * 120.00202 * 186.21093 * 16 15 14 18 18 O 1.21312 * 119.99932 * 0.02562 * 17 16 15 19 19 C 1.50693 * 120.00248 * 180.02562 * 17 16 15 20 20 N 1.46897 * 109.47325 * 180.02562 * 19 17 16 21 21 C 1.47015 * 111.00163 * 293.62996 * 20 19 17 22 22 C 1.53097 * 109.26095 * 177.60477 * 21 20 19 23 23 O 1.43014 * 109.25420 * 56.85709 * 22 21 20 24 24 C 1.43015 * 113.73596 * 301.32587 * 23 22 21 25 25 C 1.47013 * 110.99979 * 170.00262 * 20 19 17 26 26 C 1.39812 * 119.82570 * 0.25534 * 13 12 11 27 27 C 1.37713 * 119.91046 * 359.51078 * 26 13 12 28 28 H 0.97009 * 119.99920 * 359.97438 * 1 2 3 29 29 H 1.07995 * 119.95905 * 359.97438 * 11 10 9 30 30 H 1.07995 * 120.04736 * 180.02562 * 12 11 10 31 31 H 1.08001 * 120.00547 * 193.47191 * 14 13 12 32 32 H 0.96999 * 119.99696 * 6.21492 * 16 15 14 33 33 H 1.09003 * 109.47136 * 59.99633 * 19 17 16 34 34 H 1.08998 * 109.46958 * 299.99992 * 19 17 16 35 35 H 1.09000 * 109.50876 * 297.54722 * 21 20 19 36 36 H 1.09007 * 109.50046 * 57.67109 * 21 20 19 37 37 H 1.08994 * 109.50868 * 296.91794 * 22 21 20 38 38 H 1.08997 * 109.54055 * 176.80908 * 22 21 20 39 39 H 1.09003 * 109.51021 * 298.73875 * 24 23 22 40 40 H 1.09005 * 109.54386 * 178.62915 * 24 23 22 41 41 H 1.09003 * 109.50417 * 302.32326 * 25 20 19 42 42 H 1.08994 * 109.51044 * 62.40862 * 25 20 19 43 43 H 1.08009 * 120.04141 * 179.74104 * 26 13 12 44 44 H 1.08007 * 119.95142 * 180.23020 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4400 0.7001 7 6 2.0087 -1.2008 0.0005 8 1 3.0887 -1.2008 0.0001 9 8 1.3346 -2.3682 0.0005 10 6 2.0692 -3.5035 0.1079 11 6 3.4583 -3.4341 0.0995 12 6 4.2077 -4.5845 0.2077 13 6 3.5703 -5.8233 0.3256 14 6 4.3682 -7.0567 0.4410 15 7 5.6393 -6.9860 0.6958 16 7 6.1706 -5.8370 1.2964 17 6 7.5038 -5.7105 1.4470 18 8 8.2440 -6.5912 1.0622 19 6 8.0752 -4.4750 2.0935 20 7 9.5398 -4.5787 2.1387 21 6 9.9638 -5.6629 3.0365 22 6 11.4904 -5.7745 3.0078 23 8 12.0623 -4.5153 3.3720 24 6 11.6711 -3.4368 2.5181 25 6 10.1462 -3.3016 2.5419 26 6 2.1737 -5.8893 0.3277 27 6 1.4315 -4.7339 0.2239 28 1 -0.4850 0.8401 0.0004 29 1 3.9500 -2.4770 0.0072 30 1 5.2862 -4.5299 0.2015 31 1 3.8958 -8.0195 0.3137 32 1 5.5787 -5.1327 1.6038 33 1 7.6857 -4.3821 3.1073 34 1 7.7913 -3.5970 1.5134 35 1 9.6338 -5.4445 4.0522 36 1 9.5237 -6.6033 2.7045 37 1 11.8167 -6.0458 2.0038 38 1 11.8134 -6.5390 3.7144 39 1 12.0026 -3.6400 1.4998 40 1 12.1242 -2.5101 2.8703 41 1 9.8395 -2.5182 1.8488 42 1 9.8186 -3.0450 3.5493 43 1 1.6777 -6.8448 0.4143 44 1 0.3526 -4.7838 0.2292 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033643241.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:07 Heat of formation + Delta-G solvation = -3.366934 kcal Electronic energy + Delta-G solvation = -27708.994697 eV Core-core repulsion = 23629.706440 eV Total energy + Delta-G solvation = -4079.288257 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.31477 -39.56779 -38.92450 -37.50652 -35.85338 -35.34145 -32.66960 -32.21860 -31.40707 -30.51451 -29.55901 -28.56537 -25.73086 -25.35240 -24.26798 -23.00739 -22.23544 -20.97741 -20.54467 -20.26494 -18.31780 -17.53566 -17.31203 -16.90725 -16.42038 -16.26859 -15.81277 -15.33876 -15.04549 -14.94630 -14.78484 -14.64039 -14.28109 -14.04890 -13.95275 -13.50907 -13.43837 -13.14476 -12.96413 -12.58577 -12.41846 -12.23611 -11.92018 -11.83613 -11.66879 -11.58303 -11.34579 -11.05387 -10.93006 -10.82087 -10.63819 -10.15166 -10.07080 -9.73527 -9.60759 -9.18573 -8.71765 -8.58612 -8.54645 -7.28695 -6.73819 -4.30514 1.21679 1.90163 2.34834 2.61533 2.93832 2.97067 3.02346 3.07642 3.51309 3.66412 3.73729 4.29884 4.48353 4.61109 4.71140 4.82742 4.86980 4.88672 4.91312 4.94792 4.99837 5.07994 5.13622 5.22975 5.29414 5.33084 5.42479 5.49344 5.51519 5.68063 5.71922 5.84571 5.88638 6.23176 6.33729 6.48684 6.55457 6.61754 6.76236 6.88065 6.88725 6.99142 7.11972 7.22511 7.46800 7.68772 7.70206 8.52054 8.70559 9.35681 10.42526 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010731 B = 0.002785 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.687816 B =10050.356850 C =12498.850487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.043 3.957 3 Si 0.944 3.056 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.395 4.395 8 H 0.096 0.904 9 O -0.161 6.161 10 C 0.165 3.835 11 C -0.234 4.234 12 C -0.074 4.074 13 C -0.221 4.221 14 C 0.147 3.853 15 N -0.271 5.271 16 N -0.584 5.584 17 C 0.524 3.476 18 O -0.499 6.499 19 C 0.038 3.962 20 N -0.518 5.518 21 C 0.011 3.989 22 C 0.067 3.933 23 O -0.389 6.389 24 C 0.065 3.935 25 C 0.016 3.984 26 C -0.036 4.036 27 C -0.193 4.193 28 H 0.275 0.725 29 H 0.132 0.868 30 H 0.120 0.880 31 H 0.175 0.825 32 H 0.395 0.605 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.039 0.961 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.046 0.954 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.120 -6.478 5.638 16.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.470 4.470 8 H 0.114 0.886 9 O -0.062 6.062 10 C 0.108 3.892 11 C -0.253 4.253 12 C -0.095 4.095 13 C -0.226 4.226 14 C -0.061 4.061 15 N -0.076 5.076 16 N -0.332 5.332 17 C 0.310 3.690 18 O -0.371 6.371 19 C -0.094 4.094 20 N -0.244 5.244 21 C -0.117 4.117 22 C -0.010 4.010 23 O -0.307 6.307 24 C -0.012 4.012 25 C -0.112 4.112 26 C -0.057 4.057 27 C -0.212 4.212 28 H 0.085 0.915 29 H 0.149 0.851 30 H 0.137 0.863 31 H 0.191 0.809 32 H 0.239 0.761 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.057 0.943 36 H 0.124 0.876 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 15.471 -7.367 5.044 17.862 hybrid contribution -1.257 2.012 0.551 2.435 sum 14.214 -5.355 5.595 16.187 Atomic orbital electron populations 1.70029 1.06124 1.28364 1.43756 1.25388 0.95916 0.99162 0.95917 0.85655 0.78965 0.79532 0.79023 1.19573 1.19962 1.18982 1.21431 0.92025 0.80555 1.53029 0.88632 1.83941 1.34867 1.11768 1.75602 1.19574 0.90243 0.88025 0.91333 1.21080 0.93753 0.98861 1.11649 1.21371 0.98998 0.91940 0.97207 1.19011 0.94051 0.92590 1.16941 1.25220 0.89035 0.97867 0.93983 1.75124 1.12233 1.07371 1.12861 1.47571 1.07646 1.20918 1.57111 1.20344 0.80734 0.88363 0.79559 1.90653 1.58028 1.41207 1.47212 1.21968 0.89187 0.97155 1.01135 1.61836 1.05871 1.04953 1.51734 1.23007 0.97304 0.97127 0.94257 1.22648 0.91327 0.85710 1.01342 1.87967 1.70722 1.17265 1.54779 1.22642 0.92679 0.90637 0.95219 1.22854 0.96316 0.91743 1.00250 1.20803 0.92233 0.97192 0.95434 1.20221 0.99967 0.90117 1.10922 0.91505 0.85088 0.86274 0.80870 0.76077 0.91284 0.87180 0.94302 0.87552 0.91950 0.88423 0.92081 0.88310 0.89217 0.93605 0.85999 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.09 13.67 55.48 0.76 -22.33 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 18.78 29.55 -169.99 -5.02 13.76 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.39 -10.04 9.48 30.88 0.29 -9.75 16 8 H 0.10 2.21 5.18 -52.49 -0.27 1.94 16 9 O -0.16 -4.18 9.75 0.43 0.00 -4.18 16 10 C 0.17 3.56 6.66 -38.96 -0.26 3.30 16 11 C -0.23 -4.48 9.15 -39.46 -0.36 -4.85 16 12 C -0.07 -1.23 7.89 -39.18 -0.31 -1.54 16 13 C -0.22 -3.38 5.68 -105.01 -0.60 -3.98 16 14 C 0.15 1.97 11.21 -14.69 -0.16 1.81 16 15 N -0.27 -4.23 11.07 32.14 0.36 -3.88 16 16 N -0.58 -8.40 4.42 31.22 0.14 -8.26 16 17 C 0.52 7.54 7.65 -10.99 -0.08 7.46 16 18 O -0.50 -8.86 14.69 5.53 0.08 -8.78 16 19 C 0.04 0.41 5.44 -4.98 -0.03 0.38 16 20 N -0.52 -5.85 4.46 -235.75 -1.05 -6.90 16 21 C 0.01 0.12 5.29 -3.71 -0.02 0.10 16 22 C 0.07 0.67 7.01 37.21 0.26 0.93 16 23 O -0.39 -4.24 10.83 -35.23 -0.38 -4.62 16 24 C 0.07 0.57 7.01 37.21 0.26 0.83 16 25 C 0.02 0.15 5.64 -3.71 -0.02 0.13 16 26 C -0.04 -0.54 9.78 -39.19 -0.38 -0.93 16 27 C -0.19 -3.54 9.97 -39.46 -0.39 -3.93 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.49 16 29 H 0.13 2.50 5.62 -52.49 -0.29 2.20 16 30 H 0.12 1.81 5.24 -52.49 -0.28 1.53 16 31 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.40 5.20 5.50 -182.59 -1.00 4.19 16 33 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 34 H 0.11 1.01 8.04 -51.93 -0.42 0.60 16 35 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 1.38 5.88 -51.92 -0.31 1.07 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 44 H 0.12 2.16 8.06 -52.48 -0.42 1.73 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -31.93 366.12 -7.85 -39.78 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.35 Total: 8.93 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -1.90 Total: -9.04 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.20 Total: -41.37 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.30 Total: -17.58 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.02 Total: 13.76 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.93 -7.85 -39.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033643241.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.413 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds