Wall clock time and date at job start Tue Mar 31 2020 05:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31446 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48505 * 109.46805 * 274.66312 * 3 2 1 5 5 H 1.48500 * 109.47161 * 34.66306 * 3 2 1 6 6 H 1.48495 * 109.47111 * 154.66662 * 3 2 1 7 7 C 1.38821 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00152 * 168.88586 * 7 2 1 9 9 N 1.37064 * 119.99845 * 348.88794 * 7 2 1 10 10 C 1.36244 * 124.87569 * 338.49228 * 9 7 2 11 11 C 1.36291 * 109.70069 * 179.97438 * 10 9 7 12 12 C 1.46917 * 126.70040 * 179.97438 * 11 10 9 13 13 N 1.30100 * 119.99925 * 180.02562 * 12 11 10 14 14 N 1.40099 * 119.99807 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99610 * 180.02562 * 14 13 12 16 16 O 1.21582 * 119.99929 * 0.02562 * 15 14 13 17 17 C 1.48075 * 120.00026 * 179.97438 * 15 14 13 18 18 C 1.39355 * 119.72919 * 179.97438 * 17 15 14 19 19 C 1.38560 * 119.05662 * 180.02562 * 18 17 15 20 20 C 1.38648 * 118.49326 * 0.02562 * 19 18 17 21 21 C 1.38537 * 119.36185 * 0.27568 * 20 19 18 22 22 N 1.31540 * 120.90894 * 359.41780 * 21 20 19 23 23 C 1.47577 * 106.59442 * 0.24164 * 11 10 9 24 24 C 1.39192 * 133.90976 * 179.75817 * 23 11 10 25 25 C 1.37900 * 119.67923 * 179.97438 * 24 23 11 26 26 C 1.38667 * 120.29552 * 359.97438 * 25 24 23 27 27 C 1.37935 * 120.60405 * 359.65736 * 26 25 24 28 28 C 1.38336 * 124.87632 * 158.46548 * 9 7 2 29 29 H 0.97003 * 119.99810 * 0.02562 * 1 2 3 30 30 H 1.07999 * 125.14670 * 359.97438 * 10 9 7 31 31 H 1.07998 * 120.00026 * 0.03346 * 12 11 10 32 32 H 0.96998 * 120.00054 * 0.02562 * 14 13 12 33 33 H 1.07997 * 120.47608 * 0.05380 * 18 17 15 34 34 H 1.08004 * 120.75261 * 180.02562 * 19 18 17 35 35 H 1.08003 * 120.31599 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.54353 * 179.70608 * 21 20 19 37 37 H 1.08003 * 120.15540 * 0.02562 * 24 23 11 38 38 H 1.08007 * 119.84973 * 179.97438 * 25 24 23 39 39 H 1.08003 * 119.69952 * 180.02562 * 26 25 24 40 40 H 1.08004 * 120.02779 * 179.86704 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.3974 2.1032 -1.3955 5 1 1.4988 2.6222 0.7963 6 1 3.5919 1.4136 0.5990 7 6 2.0085 -1.2022 0.0005 8 1 3.0733 -1.2111 -0.1797 9 7 1.3425 -2.3780 0.2298 10 6 0.1401 -2.4817 0.8622 11 6 -0.2365 -3.7902 0.9215 12 6 -1.4664 -4.3235 1.5226 13 7 -1.6959 -5.6040 1.5067 14 7 -2.8691 -6.1125 2.0794 15 6 -3.1066 -7.4391 2.0634 16 8 -2.3026 -8.1944 1.5524 17 6 -4.3462 -7.9766 2.6692 18 6 -4.5863 -9.3492 2.6490 19 6 -5.7510 -9.8371 3.2194 20 6 -6.6361 -8.9353 3.7901 21 6 -6.3361 -7.5830 3.7688 22 7 -5.2203 -7.1469 3.2258 23 6 0.8356 -4.5673 0.2699 24 6 1.0327 -5.9232 0.0248 25 6 2.1739 -6.3405 -0.6272 26 6 3.1222 -5.4161 -1.0384 27 6 2.9356 -4.0689 -0.8084 28 6 1.7942 -3.6297 -0.1481 29 1 -0.4850 0.8401 -0.0004 30 1 -0.4284 -1.6525 1.2568 31 1 -2.1800 -3.6526 1.9775 32 1 -3.5103 -5.5098 2.4874 33 1 -3.8746 -10.0232 2.1956 34 1 -5.9645 -10.8958 3.2194 35 1 -7.5530 -9.2834 4.2425 36 1 -7.0258 -6.8775 4.2083 37 1 0.2949 -6.6449 0.3430 38 1 2.3298 -7.3920 -0.8184 39 1 4.0124 -5.7535 -1.5486 40 1 3.6812 -3.3572 -1.1308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033697383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:44 Heat of formation + Delta-G solvation = 103.970947 kcal Electronic energy + Delta-G solvation = -26110.229784 eV Core-core repulsion = 22277.479055 eV Total energy + Delta-G solvation = -3832.750728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.117 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.65740 -40.17576 -38.65680 -36.17615 -35.90662 -33.51382 -33.02087 -32.08888 -31.53956 -30.08669 -28.72138 -27.88638 -25.57723 -24.59094 -23.74594 -22.28640 -21.61562 -20.77885 -20.32215 -19.17174 -17.87984 -17.71499 -16.94273 -16.49132 -16.02382 -15.61082 -15.15475 -15.12725 -14.83939 -14.70858 -14.31383 -14.06628 -13.76380 -13.56587 -13.50914 -13.12787 -12.90546 -12.32094 -12.25359 -11.96551 -11.79542 -11.52630 -11.37195 -11.12067 -10.73970 -10.69710 -10.44460 -10.30091 -10.28847 -10.03736 -9.70614 -9.50398 -9.47584 -9.26544 -8.97171 -8.08450 -7.21973 -6.99204 -6.53069 -4.45917 0.40292 0.91035 1.92785 2.36443 2.67971 2.85444 2.89350 2.96389 3.01035 3.10762 3.69667 3.75461 3.91210 4.14596 4.48196 4.53646 4.66075 4.67501 4.74101 4.76812 5.03494 5.12361 5.39544 5.42413 5.66380 5.67779 5.79051 5.84216 5.94654 6.06090 6.25802 6.37552 6.44496 6.57348 6.79326 6.92337 6.99534 7.04407 7.10742 7.35151 7.41111 7.50487 7.56449 7.62720 7.89812 8.00385 8.03634 8.29755 8.79117 8.93435 9.20793 10.10705 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.002548 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.082359 B =10987.145629 C =12710.237659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.339 4.339 8 H 0.110 0.890 9 N -0.274 5.274 10 C 0.133 3.867 11 C -0.243 4.243 12 C 0.196 3.804 13 N -0.291 5.291 14 N -0.565 5.565 15 C 0.582 3.418 16 O -0.508 6.508 17 C 0.089 3.911 18 C -0.111 4.111 19 C -0.081 4.081 20 C -0.155 4.155 21 C 0.098 3.902 22 N -0.462 5.462 23 C -0.067 4.067 24 C -0.076 4.076 25 C -0.162 4.162 26 C -0.137 4.137 27 C -0.108 4.108 28 C 0.046 3.954 29 H 0.283 0.717 30 H 0.179 0.821 31 H 0.104 0.896 32 H 0.385 0.615 33 H 0.151 0.849 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.163 0.837 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.781 -9.644 6.790 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.466 4.466 8 H 0.128 0.872 9 N 0.065 4.935 10 C -0.012 4.012 11 C -0.254 4.254 12 C -0.008 4.008 13 N -0.098 5.098 14 N -0.304 5.304 15 C 0.366 3.634 16 O -0.381 6.381 17 C -0.050 4.050 18 C -0.132 4.132 19 C -0.107 4.107 20 C -0.175 4.175 21 C -0.062 4.062 22 N -0.174 5.174 23 C -0.073 4.073 24 C -0.094 4.094 25 C -0.181 4.181 26 C -0.157 4.157 27 C -0.128 4.128 28 C -0.061 4.061 29 H 0.094 0.906 30 H 0.196 0.804 31 H 0.121 0.879 32 H 0.223 0.777 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.180 0.820 37 H 0.142 0.858 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.752 -9.769 6.109 15.095 hybrid contribution -0.857 1.050 0.469 1.435 sum -10.609 -8.719 6.578 15.226 Atomic orbital electron populations 1.69851 1.06300 1.29312 1.42411 1.25534 0.95788 1.00740 0.94556 0.85658 0.79502 0.79257 0.78970 1.19638 1.19927 1.18695 1.19912 0.94298 0.81914 1.50514 0.87215 1.40059 1.14434 1.03926 1.35032 1.22196 0.88275 0.95639 0.95116 1.17905 0.96713 0.92046 1.18765 1.23595 0.94390 0.90487 0.92345 1.75411 1.01606 1.14811 1.18004 1.46656 1.19732 1.07520 1.56521 1.17424 0.84655 0.81298 0.79979 1.90797 1.45986 1.57283 1.43992 1.21205 0.94537 0.91171 0.98116 1.22155 0.97859 0.95503 0.97653 1.21645 0.93053 1.00837 0.95178 1.22379 1.00694 0.94716 0.99701 1.22818 0.93387 0.94356 0.95628 1.67615 1.02772 1.39431 1.07579 1.18795 0.94183 0.92447 1.01835 1.20569 0.96944 0.94129 0.97780 1.20683 0.95712 0.98264 1.03458 1.20503 0.99430 0.92266 1.03492 1.19907 0.96040 0.95296 1.01510 1.18474 0.97746 0.85442 1.04453 0.90635 0.80426 0.87860 0.77677 0.83158 0.83977 0.84228 0.82000 0.85801 0.87552 0.87379 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.24 10.86 55.49 0.60 -19.64 16 2 C 0.04 1.00 5.34 -17.50 -0.09 0.91 16 3 Si 0.94 17.81 29.57 -169.99 -5.03 12.78 16 4 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 7 C -0.34 -8.28 9.89 -15.00 -0.15 -8.43 16 8 H 0.11 2.56 7.85 -52.49 -0.41 2.14 16 9 N -0.27 -6.82 2.89 -59.47 -0.17 -6.99 16 10 C 0.13 3.15 9.85 -16.29 -0.16 2.99 16 11 C -0.24 -5.54 6.27 -103.28 -0.65 -6.19 16 12 C 0.20 3.88 10.98 -14.77 -0.16 3.71 16 13 N -0.29 -5.98 9.82 32.08 0.31 -5.67 16 14 N -0.57 -9.90 6.25 30.59 0.19 -9.71 16 15 C 0.58 10.16 7.93 -12.22 -0.10 10.07 16 16 O -0.51 -10.47 16.66 5.29 0.09 -10.38 16 17 C 0.09 1.21 6.75 -83.02 -0.56 0.65 16 18 C -0.11 -1.21 9.63 -39.05 -0.38 -1.59 16 19 C -0.08 -0.61 10.17 -39.31 -0.40 -1.01 16 20 C -0.15 -1.04 10.11 -39.32 -0.40 -1.43 16 21 C 0.10 0.82 11.18 -17.57 -0.20 0.63 16 22 N -0.46 -5.54 9.54 -9.81 -0.09 -5.63 16 23 C -0.07 -1.60 6.25 -104.90 -0.66 -2.26 16 24 C -0.08 -1.69 9.81 -39.35 -0.39 -2.07 16 25 C -0.16 -3.23 10.03 -39.55 -0.40 -3.63 16 26 C -0.14 -2.66 10.02 -39.53 -0.40 -3.06 16 27 C -0.11 -2.32 9.93 -39.41 -0.39 -2.71 16 28 C 0.05 1.11 6.73 -83.82 -0.56 0.55 16 29 H 0.28 6.23 8.31 -40.82 -0.34 5.89 16 30 H 0.18 4.09 6.35 -52.49 -0.33 3.76 16 31 H 0.10 1.68 8.03 -52.49 -0.42 1.26 16 32 H 0.38 5.72 7.98 -182.60 -1.46 4.26 16 33 H 0.15 1.60 7.64 -52.49 -0.40 1.20 16 34 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 35 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 36 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.12 2.83 7.23 -52.48 -0.38 2.45 16 38 H 0.11 1.84 8.06 -52.48 -0.42 1.41 16 39 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.11 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -30.70 359.54 -9.78 -40.48 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -5.08 Total: 12.22 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -6.03 Total: -12.88 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.84 Total: -47.64 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.70 -9.78 -40.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033697383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.451 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds