Wall clock time and date at job start Tue Mar 31 2020 05:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 114.00043 * 2 1 4 4 C 1.52992 * 109.47145 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47247 * 179.97438 * 4 3 2 6 6 C 1.36460 * 127.16490 * 86.15922 * 5 4 3 7 7 S 1.76203 * 126.37912 * 359.94682 * 6 5 4 8 8 C 1.81001 * 100.00021 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.46765 * 180.02562 * 8 7 6 10 10 C 1.50707 * 109.46821 * 180.02562 * 9 8 7 11 11 H 1.07991 * 119.99951 * 359.97438 * 10 9 8 12 12 C 1.37872 * 119.99612 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00206 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99767 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47183 * 89.99965 * 14 12 10 16 16 H 1.48499 * 109.47000 * 210.00041 * 14 12 10 17 17 H 1.48501 * 109.46941 * 329.99585 * 14 12 10 18 18 N 1.31552 * 107.24566 * 179.97438 * 6 5 4 19 19 N 1.28510 * 110.06544 * 0.02562 * 18 6 5 20 20 C 1.31293 * 109.94027 * 359.73627 * 19 18 6 21 21 C 1.47778 * 126.46248 * 180.29375 * 20 19 18 22 22 C 1.40035 * 120.92990 * 198.47154 * 21 20 19 23 23 C 1.37889 * 118.99166 * 179.76829 * 22 21 20 24 24 N 1.31974 * 120.90457 * 0.52042 * 23 22 21 25 25 C 1.31974 * 122.06556 * 359.73127 * 24 23 22 26 26 C 1.37889 * 120.90231 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.47084 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47436 * 300.00452 * 1 2 3 29 29 H 1.08995 * 109.47066 * 60.00254 * 1 2 3 30 30 H 1.09008 * 109.46160 * 299.99558 * 3 2 1 31 31 H 1.08991 * 109.47257 * 59.99443 * 3 2 1 32 32 H 1.08999 * 109.46943 * 299.99616 * 4 3 2 33 33 H 1.09001 * 109.47666 * 59.99382 * 4 3 2 34 34 H 1.08998 * 109.46799 * 299.99556 * 8 7 6 35 35 H 1.08999 * 109.47207 * 59.99885 * 8 7 6 36 36 H 1.09007 * 109.46961 * 299.99571 * 9 8 7 37 37 H 1.08999 * 109.47410 * 59.99939 * 9 8 7 38 38 H 0.97001 * 119.99909 * 179.97438 * 13 12 10 39 39 H 1.08004 * 120.50422 * 0.02562 * 22 21 20 40 40 H 1.07999 * 119.55095 * 180.27102 * 23 22 21 41 41 H 1.07992 * 119.54573 * 180.02562 * 25 24 23 42 42 H 1.08004 * 120.50388 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5230 -0.0013 6 6 4.4005 3.3060 1.0834 7 16 4.0937 2.8971 2.7696 8 6 4.7052 4.3990 3.5736 9 6 4.5370 4.2708 5.0890 10 6 5.0456 5.5216 5.7584 11 1 5.4489 6.3270 5.1627 12 6 4.9961 5.6374 7.1314 13 7 4.5046 4.6567 7.8568 14 14 5.6272 7.1875 7.9612 15 1 4.5190 8.1678 8.0870 16 1 6.1454 6.8502 9.3113 17 1 6.7190 7.7765 7.1449 18 7 4.9314 4.4233 0.6357 19 7 5.0106 4.3911 -0.6465 20 6 4.5410 3.2502 -1.0956 21 6 4.4646 2.8275 -2.5095 22 6 3.6170 1.7850 -2.9044 23 6 3.5736 1.4265 -4.2351 24 7 4.3237 2.0441 -5.1283 25 6 5.1395 3.0277 -4.7984 26 6 5.2424 3.4541 -3.4911 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8463 -0.8901 31 1 1.6886 1.8464 0.8899 32 1 3.8573 0.6437 0.8891 33 1 3.8567 0.6439 -0.8908 34 1 5.7602 4.5345 3.3357 35 1 4.1387 5.2589 3.2162 36 1 3.4820 4.1349 5.3273 37 1 5.1038 3.4109 5.4461 38 1 4.4701 4.7381 8.8227 39 1 3.0035 1.2724 -2.1782 40 1 2.9199 0.6267 -4.5503 41 1 5.7346 3.5050 -5.5627 42 1 5.9125 4.2593 -3.2283 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040456880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:29 Heat of formation + Delta-G solvation = 66.406731 kcal Electronic energy + Delta-G solvation = -25253.692387 eV Core-core repulsion = 21554.756703 eV Total energy + Delta-G solvation = -3698.935684 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.99807 -40.31506 -38.53296 -35.67724 -33.80786 -33.74094 -31.67652 -31.04391 -30.34409 -29.98421 -26.83867 -25.49746 -24.74587 -24.24288 -23.71271 -22.40722 -21.57859 -20.85806 -18.32482 -17.19796 -17.12421 -16.91177 -16.67011 -16.58880 -16.18267 -15.84903 -15.64405 -15.12182 -14.54822 -14.42092 -14.26382 -14.21518 -13.83752 -13.70089 -13.53786 -12.83567 -12.27676 -12.19499 -12.09079 -11.92694 -11.79855 -11.56053 -11.20203 -11.00403 -10.79756 -10.67907 -10.54130 -10.34355 -10.21208 -10.14940 -9.92466 -9.76510 -9.60513 -9.40006 -9.24106 -8.48767 -7.45065 -6.13151 -4.17427 0.30694 0.71765 1.18220 1.69578 2.12887 2.60953 2.70950 3.27668 3.30956 3.34069 3.38538 3.46378 3.78702 4.04241 4.06887 4.29745 4.38036 4.38373 4.50987 4.65530 4.69000 4.86424 4.93232 4.99191 5.01654 5.07874 5.22807 5.23403 5.28375 5.29712 5.40672 5.53837 5.75827 5.85890 5.90877 6.10445 6.21222 6.38403 6.56680 6.59050 7.40644 7.46338 7.54217 7.82583 8.17956 8.46219 8.87163 9.47313 10.97755 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.002657 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.626553 B =10535.830996 C =12175.268963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.042 3.958 4 C 0.099 3.901 5 N -0.458 5.458 6 C 0.186 3.814 7 S -0.022 6.022 8 C -0.075 4.075 9 C 0.036 3.964 10 C -0.518 4.518 11 H 0.062 0.938 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 N -0.286 5.286 19 N -0.251 5.251 20 C 0.193 3.807 21 C 0.043 3.957 22 C -0.178 4.178 23 C 0.108 3.892 24 N -0.482 5.482 25 C 0.106 3.894 26 C -0.133 4.133 27 H 0.092 0.908 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.263 0.737 39 H 0.142 0.858 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.741 -10.691 -22.432 25.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.036 4.036 4 C -0.024 4.024 5 N -0.153 5.153 6 C -0.187 4.187 7 S 0.209 5.791 8 C -0.224 4.224 9 C -0.004 4.004 10 C -0.559 4.559 11 H 0.080 0.920 12 C -0.142 4.142 13 N -0.531 5.531 14 Si 0.726 3.274 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.196 1.196 18 N -0.131 5.131 19 N -0.093 5.093 20 C -0.073 4.073 21 C 0.032 3.968 22 C -0.200 4.200 23 C -0.049 4.049 24 N -0.192 5.192 25 C -0.050 4.050 26 C -0.155 4.155 27 H 0.111 0.889 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.160 0.840 40 H 0.179 0.821 41 H 0.181 0.819 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.590 -10.794 -22.594 25.657 hybrid contribution 0.057 1.125 0.970 1.486 sum -5.532 -9.669 -21.625 24.325 Atomic orbital electron populations 1.22829 0.79696 1.03321 1.00604 1.87798 1.20748 1.26059 1.95606 1.22800 0.92247 0.86171 1.02359 1.21870 0.92896 0.80454 1.07188 1.46247 1.47883 1.15986 1.05202 1.27454 1.02790 0.91591 0.96858 1.85832 1.78100 1.30195 0.84994 1.24075 1.03924 0.92788 1.01590 1.18996 0.98498 0.98643 0.84226 1.21038 1.41754 1.01509 0.91572 0.92001 1.25002 0.95119 0.96721 0.97355 1.69958 1.45279 1.31818 1.06009 0.86478 0.79240 0.82921 0.78749 1.20492 1.21096 1.19643 1.74911 1.18957 1.16962 1.02244 1.74306 1.16271 1.15113 1.03599 1.22642 1.04893 0.91097 0.88655 1.17775 0.96257 0.95255 0.87466 1.22562 1.00414 0.98182 0.98842 1.22665 0.95981 0.97815 0.88425 1.67693 1.05571 1.07753 1.38148 1.22784 0.95010 0.92619 0.94625 1.22267 0.99353 1.00770 0.93089 0.88938 0.93339 0.93796 0.92328 0.91131 0.86724 0.86938 0.89416 0.89444 0.95386 0.95328 0.92699 0.84010 0.82131 0.81863 0.83285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.42 10.70 -35.23 -0.38 -3.80 16 3 C 0.04 0.39 5.65 37.15 0.21 0.60 16 4 C 0.10 0.98 5.51 -4.05 -0.02 0.96 16 5 N -0.46 -6.15 2.83 -114.09 -0.32 -6.48 16 6 C 0.19 3.08 8.07 -88.19 -0.71 2.36 16 7 S -0.02 -0.38 21.88 -107.50 -2.35 -2.73 16 8 C -0.08 -1.54 5.17 37.16 0.19 -1.35 16 9 C 0.04 0.88 4.98 -27.88 -0.14 0.74 16 10 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 11 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 14 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 N -0.29 -5.35 11.59 30.71 0.36 -4.99 16 19 N -0.25 -4.30 12.10 32.59 0.39 -3.90 16 20 C 0.19 2.70 7.73 -153.72 -1.19 1.51 16 21 C 0.04 0.48 5.90 -104.65 -0.62 -0.14 16 22 C -0.18 -1.56 8.74 -39.04 -0.34 -1.90 16 23 C 0.11 0.87 11.17 -17.62 -0.20 0.68 16 24 N -0.48 -4.58 10.35 -13.37 -0.14 -4.72 16 25 C 0.11 0.90 11.17 -17.62 -0.20 0.70 16 26 C -0.13 -1.29 9.81 -39.03 -0.38 -1.68 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.50 7.10 -51.92 -0.37 0.13 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.11 1.13 7.97 -51.93 -0.41 0.72 16 33 H 0.11 0.91 5.72 -51.93 -0.30 0.61 16 34 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 35 H 0.09 1.81 8.14 -51.92 -0.42 1.38 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.14 1.06 3.58 -52.48 -0.19 0.87 16 40 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.15 1.39 8.05 -52.48 -0.42 0.96 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -32.25 372.79 -9.26 -41.51 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -5.46 Total: -2.49 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -2.69 Total: -9.06 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 1.03 Total: -45.18 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: -0.38 Total: -3.80 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -2.35 Total: -2.73 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.25 -9.26 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040456880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.915 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds