Wall clock time and date at job start Tue Mar 31 2020 05:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 S 1.81002 * 109.47089 * 180.02562 * 10 9 7 12 12 C 1.76198 * 99.99878 * 180.02562 * 11 10 9 13 13 N 1.31000 * 125.08835 * 359.69419 * 12 11 10 14 14 C 1.36043 * 108.71751 * 179.87435 * 13 12 11 15 15 C 1.40779 * 132.97423 * 180.16221 * 14 13 12 16 16 C 1.35684 * 120.69577 * 180.30904 * 15 14 13 17 17 Cl 1.73594 * 119.88215 * 179.97438 * 16 15 14 18 18 C 1.40921 * 120.24272 * 359.95828 * 16 15 14 19 19 C 1.40546 * 121.08259 * 180.02562 * 18 16 15 20 20 C 1.36721 * 118.26441 * 180.02562 * 19 18 16 21 21 C 1.39163 * 119.90951 * 359.97438 * 20 19 18 22 22 N 1.31180 * 121.66916 * 359.97438 * 21 20 19 23 23 C 1.33627 * 121.37805 * 0.02562 * 22 21 20 24 24 C 1.39339 * 106.67683 * 0.37909 * 14 13 12 25 25 O 1.34410 * 125.09302 * 179.97438 * 12 11 10 26 26 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 28 28 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 29 29 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 30 30 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 31 31 H 1.08002 * 119.65561 * 0.27164 * 15 14 13 32 32 H 1.08005 * 120.86742 * 0.02562 * 19 18 16 33 33 H 1.07996 * 120.05078 * 179.97438 * 20 19 18 34 34 H 1.07998 * 119.16807 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3404 -5.2296 -0.0013 12 6 2.6902 -6.3621 -0.0004 13 7 3.9561 -6.0250 -0.0052 14 6 4.7096 -7.1577 0.0002 15 6 6.0987 -7.3862 0.0015 16 6 6.5928 -8.6499 0.0011 17 17 8.3095 -8.9073 0.0021 18 6 5.7174 -9.7542 0.0002 19 6 6.2099 -11.0706 0.0003 20 6 5.3090 -12.0989 -0.0011 21 6 3.9444 -11.8260 -0.0021 22 7 3.4880 -10.5961 -0.0012 23 6 4.3156 -9.5469 0.0002 24 6 3.8197 -8.2299 -0.0002 25 8 2.5753 -7.7013 -0.0001 26 1 -0.4851 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6248 -2.5571 0.8896 29 1 2.8721 -3.6042 -0.8905 30 1 2.8721 -3.6043 0.8895 31 1 6.7784 -6.5468 0.0023 32 1 7.2724 -11.2647 0.0015 33 1 5.6557 -13.1217 -0.0015 34 1 3.2433 -12.6474 -0.0028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040544882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:07 Heat of formation + Delta-G solvation = 55.422126 kcal Electronic energy + Delta-G solvation = -21894.581593 eV Core-core repulsion = 18331.919806 eV Total energy + Delta-G solvation = -3562.661787 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 334.028 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.37926 -40.79227 -37.66880 -36.38457 -34.48700 -33.81661 -33.53141 -31.07215 -30.64719 -29.60068 -25.57133 -24.85506 -24.68587 -23.35021 -22.09418 -21.32846 -19.61622 -18.56279 -17.37948 -17.28788 -17.03937 -16.65511 -16.54046 -15.40744 -14.71992 -14.67186 -14.56885 -14.20509 -13.91897 -13.90099 -13.74487 -13.24561 -13.24210 -12.29617 -12.17057 -11.94136 -11.81633 -11.45288 -11.23570 -11.02033 -10.80988 -10.78354 -10.69116 -10.37971 -10.33276 -10.07474 -9.81576 -9.26851 -9.18859 -8.70123 -8.51596 -7.51240 -6.15471 -4.20221 -0.07888 0.02057 0.84872 1.38385 1.50528 1.65277 2.37906 2.67977 2.77526 3.25080 3.33074 3.37460 3.52561 3.67631 4.09004 4.18127 4.35992 4.37938 4.44369 4.46778 4.58116 5.00645 5.06986 5.21124 5.32007 5.39267 5.57282 5.68695 5.71529 5.83400 5.84439 6.02604 6.10358 6.52354 7.23489 7.37104 7.41178 7.42137 7.79737 8.14124 8.84275 9.44644 10.95425 Molecular weight = 334.03amu Principal moments of inertia in cm(-1) A = 0.019586 B = 0.002491 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.273827 B =11236.833746 C =12645.660278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.035 3.965 10 C -0.087 4.087 11 S 0.039 5.961 12 C 0.228 3.772 13 N -0.478 5.478 14 C 0.067 3.933 15 C -0.041 4.041 16 C -0.021 4.021 17 Cl -0.046 7.046 18 C -0.084 4.084 19 C -0.049 4.049 20 C -0.169 4.169 21 C 0.134 3.866 22 N -0.464 5.464 23 C 0.187 3.813 24 C 0.016 3.984 25 O -0.166 6.166 26 H 0.264 0.736 27 H 0.030 0.970 28 H 0.030 0.970 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.000 -24.636 0.013 27.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.081 0.919 9 C -0.005 4.005 10 C -0.235 4.235 11 S 0.274 5.726 12 C -0.087 4.087 13 N -0.211 5.211 14 C -0.053 4.053 15 C -0.061 4.061 16 C -0.050 4.050 17 Cl -0.017 7.017 18 C -0.087 4.087 19 C -0.075 4.075 20 C -0.189 4.189 21 C -0.036 4.036 22 N -0.172 5.172 23 C 0.062 3.938 24 C -0.042 4.042 25 O -0.056 6.056 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.172 0.828 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 11.048 -23.847 0.005 26.282 hybrid contribution 2.479 0.211 0.004 2.488 sum 13.527 -23.637 0.009 27.234 Atomic orbital electron populations 1.69961 1.06093 1.27037 1.49795 1.25009 0.94941 0.99427 0.94837 0.86413 0.80081 0.83099 0.77721 1.19542 1.20836 1.20831 1.21042 0.93257 0.89529 1.52044 0.91930 1.19027 0.93396 0.89166 0.98884 1.24258 1.02566 0.90313 1.06401 1.86367 1.00712 0.96769 1.88790 1.29134 0.98528 0.83272 0.97764 1.71395 0.99850 1.26999 1.22839 1.19589 0.94250 0.88245 1.03187 1.19791 0.91972 0.96316 0.98029 1.20076 0.85285 0.93084 1.06581 1.98377 1.09635 1.96803 1.96891 1.18134 0.91540 0.94187 1.04863 1.21467 1.01243 0.90364 0.94396 1.21959 0.94266 1.00822 1.01811 1.23066 0.94297 0.93738 0.92520 1.68155 1.37798 0.99104 1.12151 1.17075 0.88092 0.88871 0.99776 1.19849 0.82915 0.93709 1.07681 1.84698 1.28443 1.20194 1.72231 0.92670 0.95128 0.95134 0.89089 0.89089 0.82840 0.83326 0.83711 0.81632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -13.89 9.11 -34.44 -0.31 -14.20 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 9 C 0.04 0.85 4.98 -27.88 -0.14 0.71 16 10 C -0.09 -1.74 5.09 37.16 0.19 -1.55 16 11 S 0.04 0.69 22.31 -107.50 -2.40 -1.71 16 12 C 0.23 4.04 8.37 52.41 0.44 4.48 16 13 N -0.48 -8.49 10.64 -11.41 -0.12 -8.61 16 14 C 0.07 1.06 7.21 -84.63 -0.61 0.45 16 15 C -0.04 -0.51 9.76 -39.54 -0.39 -0.90 16 16 C -0.02 -0.23 6.30 -39.48 -0.25 -0.48 16 17 Cl -0.05 -0.39 27.47 -51.86 -1.42 -1.82 16 18 C -0.08 -0.93 5.75 -106.69 -0.61 -1.55 16 19 C -0.05 -0.39 9.51 -39.26 -0.37 -0.76 16 20 C -0.17 -1.09 10.03 -39.79 -0.40 -1.49 16 21 C 0.13 1.13 11.15 -17.49 -0.19 0.93 16 22 N -0.46 -5.99 10.34 -10.97 -0.11 -6.10 16 23 C 0.19 2.58 6.61 -84.82 -0.56 2.02 16 24 C 0.02 0.25 7.38 -38.23 -0.28 -0.03 16 25 O -0.17 -2.90 10.79 2.88 0.03 -2.87 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.81 8.14 -51.91 -0.42 1.38 16 30 H 0.09 1.81 8.14 -51.92 -0.42 1.38 16 31 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 32 H 0.15 0.85 7.01 -52.48 -0.37 0.48 16 33 H 0.15 0.42 8.06 -52.49 -0.42 -0.01 16 34 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 332.19 15.07 5.01 5.01 Total: -1.00 -30.52 332.19 -9.76 -40.28 By element: Atomic # 1 Polarization: -1.51 SS G_CDS: -2.87 Total: -4.37 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -3.59 Total: -10.81 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.50 Total: -39.57 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: 0.03 Total: -2.87 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.40 Total: -1.71 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.42 Total: -1.82 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.52 -9.76 -40.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040544882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.706 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds